[Dune-devel] Building dune-common with gcc-4.8 fails

Jö Fahlke jorrit at jorrit.de
Wed Jul 1 15:14:34 CEST 2015


Am Wed,  1. Jul 2015, 14:53:22 +0200 schrieb Carsten Gräser:
> Date: Wed, 01 Jul 2015 14:53:22 +0200
> From: Carsten Gräser <graeser at mi.fu-berlin.de>
> To: "dune-devel at dune-project.org" <dune-devel at dune-project.org>
> Subject: [Dune-devel] Building dune-common with gcc-4.8 fails
> 
> Dear all,
> when testing the release I noticed that building dune-common
> with gcc-4.8 (and below) on ubuntu 15.04, 64bit, currently
> fails with the following error:
> 
>   g++-4.8: error: unrecognized command line option ‘-fstack-protector-strong’
>   doc/comm/CMakeFiles/indexset.dir/build.make:54: recipe for target 'doc/comm/CMakeFiles/indexset.dir/indexset.cc.o' failed
>   make[2]: *** [doc/comm/CMakeFiles/indexset.dir/indexset.cc.o] Error 1
> 
> I don't have any idea where this flag is added. It's not present
> in my options file and grep does not find it in dune-common.
> 
> I'm building with cmake and the option file just contains
> 
>   CMAKE_FLAGS="-DCMAKE_CXX_COMPILER='/usr/bin/g++-4.8'"
> 
> Any ideas? Can someone confirm this on another distribution

I cannot reproduce this behaviour on Debian Jessie.

I cloned a fresh dune-common, switched to the realease branch, recreated your
opts-file and and ran dunecontrol all and make test.  indexset.cc seems to be
compiled successfully.

However, I did notice the following
======================================================================
-- The C compiler identification is GNU 4.9.2
-- The CXX compiler identification is GNU 4.8.4
======================================================================
Maybe your problem has something to do with that?  What is your C compiler?

Regards,
Jö.


======================================================================
-*- mode: compilation; default-directory: "~/Projekte/dune-2.4/" -*-
Compilation started at Wed Jul  1 15:08:40

set -ex; dune-common/bin/dunecontrol --opts=dunecontrol.opts all; cd dune-common/build-cmake; make test
+ dune-common/bin/dunecontrol --opts=dunecontrol.opts all
--- going to build dune-common  ---
--- calling all for dune-common ---
--- calling vcsetup for dune-common ---
--- calling autogen for dune-common ---
Skipping dune-autogen because of CMake
--- calling configure for dune-common ---
 cmake -DCMAKE_MODULE_PATH=""  -DCMAKE_CXX_COMPILER='/usr/bin/g++-4.8' "/home/joe/Projekte/dune-2.4/dune-common"
-- The C compiler identification is GNU 4.9.2
-- The CXX compiler identification is GNU 4.8.4
-- Check for working C compiler: /usr/lib/ccache/cc
-- Check for working C compiler: /usr/lib/ccache/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/g++-4.8
-- Check for working CXX compiler: /usr/bin/g++-4.8 -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- The Fortran compiler identification is GNU
-- Check for working Fortran compiler: /usr/bin/gfortran
-- Check for working Fortran compiler: /usr/bin/gfortran  -- works
-- Detecting Fortran compiler ABI info
-- Detecting Fortran compiler ABI info - done
-- Checking whether /usr/bin/gfortran supports Fortran 90
-- Checking whether /usr/bin/gfortran supports Fortran 90 -- yes
-- Checking to see if CXX compiler accepts flag -std=c++11
-- Checking to see if CXX compiler accepts flag -std=c++11 - yes
-- Performing Test HAVE_NULLPTR
-- Performing Test HAVE_NULLPTR - Success
-- Performing Test HAVE_NULLPTR_T
-- Performing Test HAVE_NULLPTR_T - Success
-- Performing Test HAS_ATTRIBUTE_UNUSED
-- Performing Test HAS_ATTRIBUTE_UNUSED - Success
-- Performing Test HAS_ATTRIBUTE_DEPRECATED
-- Performing Test HAS_ATTRIBUTE_DEPRECATED - Success
-- Performing Test HAS_ATTRIBUTE_DEPRECATED_MSG
-- Performing Test HAS_ATTRIBUTE_DEPRECATED_MSG - Success
-- Performing Test HAVE_CONSTEXPR
-- Performing Test HAVE_CONSTEXPR - Success
-- Performing Test HAVE_KEYWORD_FINAL
-- Performing Test HAVE_KEYWORD_FINAL - Success
-- Performing Test HAVE_RANGE_BASED_FOR
-- Performing Test HAVE_RANGE_BASED_FOR - Success
-- Performing Test HAVE_NOEXCEPT_SPECIFIER
-- Performing Test HAVE_NOEXCEPT_SPECIFIER - Success
-- Performing Test HAVE_STD_DECLVAL
-- Performing Test HAVE_STD_DECLVAL - Success
-- Performing Test HAVE_IS_INDEXABLE_SUPPORT
-- Performing Test HAVE_IS_INDEXABLE_SUPPORT - Success
-- Looking for include file pthread.h
-- Looking for include file pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - not found
-- Check if compiler accepts -pthread
-- Check if compiler accepts -pthread - yes
-- Found Threads: TRUE  
-- Performing Test STDTHREAD_WORKS
-- Performing Test STDTHREAD_WORKS - Success
-- Performing Test HAVE_CXA_DEMANGLE
-- Performing Test HAVE_CXA_DEMANGLE - Success
-- Found MPI_C: /usr/lib/libmpi.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libhwloc.so  
-- Found MPI_CXX: /usr/lib/libmpi_cxx.so;/usr/lib/libmpi.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libhwloc.so  
-- Found MPI_Fortran: /usr/lib/libmpi_f90.so;/usr/lib/libmpi_f77.so;/usr/lib/libmpi.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libhwloc.so  
-- Looking for MPI_Finalized
-- Looking for MPI_Finalized - found
-- Performing Test MPI_VERSION_SUPPORTED
-- Performing Test MPI_VERSION_SUPPORTED - Success
-- Detecting Fortran/C Interface
-- Detecting Fortran/C Interface - Found GLOBAL and MODULE mangling
-- Verifying Fortran/CXX Compiler Compatibility
-- Verifying Fortran/CXX Compiler Compatibility - Success
-- Found Doxygen: /usr/bin/doxygen (found version "1.8.8") 
-- Found PkgConfig: /usr/bin/pkg-config (found version "0.28") 
-- Performing tests specific to dune-common from file /home/joe/Projekte/dune-2.4/dune-common/cmake/modules/DuneCommonMacros.cmake.
-- Looking for Fortran dgemm
-- Looking for Fortran dgemm - found
-- A library with BLAS API found.
-- Looking for Fortran cheev
-- Looking for Fortran cheev - found
-- A library with LAPACK API found.
-- Looking for C++ include gmpxx.h
-- Looking for C++ include gmpxx.h - found
-- Looking for __gmpz_abs in /usr/lib/x86_64-linux-gnu/libgmp.so
-- Looking for __gmpz_abs in /usr/lib/x86_64-linux-gnu/libgmp.so - found
-- Found GMP: /usr/include  
-- Looking for sys/mman.h
-- Looking for sys/mman.h - found
-- Performing Test HAVE_MPROTECT
-- Performing Test HAVE_MPROTECT - Success
-- Using scripts from /home/joe/Projekte/dune-2.4/dune-common/cmake/scripts for creating doxygen stuff.
-- using /home/joe/Projekte/dune-2.4/dune-common/doc/doxygen/Doxystyle to create doxystyle file
CMake Warning at cmake/modules/DuneDoc.cmake:91 (message):
  Not adding rule to create buildsystem.pdf as LaTeX is not usable!
Call Stack (most recent call first):
  doc/buildsystem/CMakeLists.txt:1 (dune_add_latex_document)


CMake Warning at cmake/modules/DuneDoc.cmake:91 (message):
  Not adding rule to create cmakefaq.pdf as LaTeX is not usable!
Call Stack (most recent call first):
  doc/buildsystem/CMakeLists.txt:4 (dune_add_latex_document)


CMake Warning at cmake/modules/DuneDoc.cmake:91 (message):
  Not adding rule to create communication.pdf as LaTeX is not usable!
Call Stack (most recent call first):
  doc/comm/CMakeLists.txt:8 (dune_add_latex_document)


-- Not adding custom target for config.h generation
-- 
-- The following OPTIONAL packages have been found:

 * Doxygen
 * PkgConfig
 * BLAS
 * LAPACK
 * GMP
 * Inkscape
 * MPI
 * Threads

-- The following OPTIONAL packages have not been found:

 * ThreadsCMake31
 * LATEX

-- Configuring done
-- Generating done
-- Build files have been written to: /home/joe/Projekte/dune-2.4/dune-common/build-cmake
--- calling make for dune-common ---
build directory: build-cmake
cmake --build . -- 
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--- dune-common done ---
--- done ---
+ cd dune-common/build-cmake
+ make test
Running tests...
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      Start  1: indexsettest
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41/49 Test #41: testdebugallocator_fail1 .........   Passed    0.00 sec
      Start 42: testdebugallocator_fail2
42/49 Test #42: testdebugallocator_fail2 .........   Passed    0.00 sec
      Start 43: testdebugallocator_fail3
43/49 Test #43: testdebugallocator_fail3 .........   Passed    0.01 sec
      Start 44: testdebugallocator_fail4
44/49 Test #44: testdebugallocator_fail4 .........   Passed    0.00 sec
      Start 45: testdebugallocator_fail5
45/49 Test #45: testdebugallocator_fail5 .........   Passed    0.00 sec
      Start 46: check_fvector_size_fail1
46/49 Test #46: check_fvector_size_fail1 .........   Passed    0.01 sec
      Start 47: check_fvector_size_fail2
47/49 Test #47: check_fvector_size_fail2 .........   Passed    0.01 sec
      Start 48: genericiterator_compile_fail
48/49 Test #48: genericiterator_compile_fail .....   Passed    0.01 sec
      Start 49: nullptr-test-fail
49/49 Test #49: nullptr-test-fail ................   Passed    0.01 sec

100% tests passed, 0 tests failed out of 49

Total Test time (real) =  38.95 sec

Compilation finished at Wed Jul  1 15:09:32
======================================================================

-- 
Jorrit (Jö) Fahlke, Institute for Computational und Applied Mathematics,
University of Münster, Orleans-Ring 10, D-48149 Münster
Tel: +49 251 83 35146 Fax: +49 251 83 32729

If you receive something that says "Send this to everyone you know,"
pretend you don't know me.
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