[Dune] Dune breaks in dune-grid
Oliver Sander
sander at mi.fu-berlin.de
Wed Dec 1 15:25:33 CET 2010
That's something else.
Best,
Oliver
Am 01.12.2010 15:20, schrieb arya fallahi:
> Thanks Oliver,
>
> Now it breaks in Dune-grid-howto.
>
> In the following, you see the retrieved message.
>
> Best
> Arya
>
> Found the following Dune-components:
>
> ----------------------------------------
>
> dune-common.............: version 2.1-svn
> dune-grid...............: version 2.1-svn
> dune-istl...............: version 2.1-svn
> ALBERTA.................: no
> ALUGrid.................: version 1.23
> AlgLib for DUNE.........: no
> AmiraMesh...............: no
> BLAS....................: no
> GMP.....................: no
> Grape...................: no
> METIS...................: yes
> MPI.....................: yes (OpenMPI)
> OpenGL..................: no
> ParMETIS................: no
> SuperLU-DIST............: no
> SuperLU.................: no
> UG......................: no
> psurface................: no
>
> ----------------------------------------
>
> See ./configure --help and config.log for reasons why a component wasn't found
>
> --- calling make for dune-grid-howto ---
> make
> cd .&& /bin/sh /Users/fallahi/svnwork/dune-trunk/dune-grid-howto/missing --run autoheader
> configure.ac:45: warning: PKG_PROG_PKG_CONFIG is m4_require'd but not m4_defun'd
> aclocal.m4:11664: DUNE_CHECK_ALL is expanded from...
> configure.ac:45: the top level
> aclocal.m4:11871: DUNE_COMMON_CHECKS is expanded from...
> dependencies.m4:40: DUNE_CHECK_MOD_DEPENDENCIES is expanded from...
> aclocal.m4:11567: DUNE_CHECK_MODULES is expanded from...
> aclocal.m4:11880: DUNE_COMMON_CHECK_MODULE is expanded from...
> aclocal.m4:9551: DUNE_GRID_CHECK_MODULE is expanded from...
> aclocal.m4:8812: DUNE_ISTL_CHECK_MODULE is expanded from...
> rm -f stamp-h1
> touch config.h.in
> make all-recursive
> Making all in doc
> make[2]: Nothing to be done for `all'.
> Making all in grids
> make[2]: Nothing to be done for `all'.
> cd .&& /bin/sh ./config.status config.h
> config.status: creating config.h
> config.status: config.h is unchanged
> mpicxx -DHAVE_CONFIG_H -I. -I/Users/fallahi/svnwork/dune-trunk/dune-common -I/Users/fallahi/svnwork/dune-trunk/dune-grid -I/Users/fallahi/svnwork/dune-trunk/dune-istl -I. -DMPICH_IGNORE_CXX_SEEK -O2 -I/Users/fallahi/extlib/boost-trunk/include -D_REENTRANT -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H -DENABLE_MPI=1 -DMPICH_IGNORE_CXX_SEEK -O2 -I/Users/fallahi/extlib/boost-trunk/include -I/Users/fallahi/svnwork/dune-trunk/dune-common -I/Users/fallahi/svnwork/dune-trunk/dune-grid -I/Users/fallahi/svnwork/dune-trunk/dune-istl -D_REENTRANT -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H -DENABLE_MPI=1 -I/Users/fallahi/svnwork/dune-trunk/dune-common -DGRIDDIM=2 -DWORLDDIM=2 -DYASPGRID -D_REENTRANT -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H -DENABLE_MPI=1 -I/Users/fallahi/extlib/ALUGrid-1.23/include -I/Users/fallahi/extlib/ALUGrid-1.23/include/serial -I/Users/fallahi/extlib/ALUGrid-1.23/include/duneinterface -DENABLE_ALUGRID -I/Users/fallahi/extlib/ALUGrid-1.23/include/parallel -I/Users/fallahi/svnwork/dune-trunk/dune-grid -I/Users/fallahi/svnwork/dune-trunk/dune-istl -DMPICH_IGNORE_CXX_SEEK -O2 -MT gettingstarted-gettingstarted.o -MD -MP -MF .deps/gettingstarted-gettingstarted.Tpo -c -o gettingstarted-gettingstarted.o `test -f 'gettingstarted.cc' || echo './'`gettingstarted.cc
> mv -f .deps/gettingstarted-gettingstarted.Tpo .deps/gettingstarted-gettingstarted.Po
> /bin/sh ./libtool --tag=CXX --mode=link mpicxx -D_REENTRANT -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H -DENABLE_MPI=1 -DMPICH_IGNORE_CXX_SEEK -O2 -I/Users/fallahi/extlib/boost-trunk/include -I/Users/fallahi/svnwork/dune-trunk/dune-common -I/Users/fallahi/svnwork/dune-trunk/dune-grid -I/Users/fallahi/svnwork/dune-trunk/dune-istl -D_REENTRANT -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H -DENABLE_MPI=1 -I/Users/fallahi/svnwork/dune-trunk/dune-common -DGRIDDIM=2 -DWORLDDIM=2 -DYASPGRID -D_REENTRANT -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H -DENABLE_MPI=1 -I/Users/fallahi/extlib/ALUGrid-1.23/include -I/Users/fallahi/extlib/ALUGrid-1.23/include/serial -I/Users/fallahi/extlib/ALUGrid-1.23/include/duneinterface -DENABLE_ALUGRID -I/Users/fallahi/extlib/ALUGrid-1.23/include/parallel -I/Users/fallahi/svnwork/dune-trunk/dune-grid -I/Users/fallahi/svnwork/dune-trunk/dune-istl -DMPICH_IGNORE_CXX_SEEK -O2 -L/Users/fallahi/extlib/boost-trunk/ -o gettingstarted gettingstarted-gettingstarted.o -L/Users/fallahi/svnwork/dune-trunk/dune-grid/lib -ldunegrid -L/Users/fallahi/svnwork/dune-trunk/dune-common/lib -ldunecommon -L/Users/fallahi/extlib/boost-trunk/ -L/Users/fallahi/svnwork/dune-trunk/dune-grid/lib -ldunegrid -L/Users/fallahi/extlib/ALUGrid-1.23/lib -lalugrid -L/Users/fallahi/extlib/openmpi-1.4.1/lib -lmpi -lopen-rte -lopen-pal -lutil -L/Users/fallahi/svnwork/dune-trunk/dune-common/lib -ldunecommon -L/Users/fallahi/extlib/openmpi-1.4.1/lib -lmpi -lopen-rte -lopen-pal -lutil -L/Users/fallahi/svnwork/dune-trunk/dune-grid/lib -ldunegrid -L/Users/fallahi/svnwork/dune-trunk/dune-common/lib -ldunecommon -L/Users/fallahi/svnwork/dune-trunk/dune-common/lib -ldunecommon -L/Users/fallahi/svnwork/dune-trunk/dune-grid/lib -ldunegrid -L/Users/fallahi/svnwork/dune-trunk/dune-common/lib -ldunecommon -lm -L/Users/fallahi/extlib/openmpi-1.4.1/lib -lmpi -lopen-rte -lopen-pal -lutil -lm
> libtool: link: warning: library `/Users/fallahi/extlib/ALUGrid-1.23/lib/libalugrid.la' was moved.
> libtool: link: warning: library `/Users/fallahi/extlib/ALUGrid-1.23/lib/libalugrid.la' was moved.
> libtool: link: mpicxx -D_REENTRANT -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H -DENABLE_MPI=1 -DMPICH_IGNORE_CXX_SEEK -O2 -I/Users/fallahi/extlib/boost-trunk/include -I/Users/fallahi/svnwork/dune-trunk/dune-common -I/Users/fallahi/svnwork/dune-trunk/dune-grid -I/Users/fallahi/svnwork/dune-trunk/dune-istl -D_REENTRANT -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H -DENABLE_MPI=1 -I/Users/fallahi/svnwork/dune-trunk/dune-common -DGRIDDIM=2 -DWORLDDIM=2 -DYASPGRID -D_REENTRANT -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H -DENABLE_MPI=1 -I/Users/fallahi/extlib/ALUGrid-1.23/include -I/Users/fallahi/extlib/ALUGrid-1.23/include/serial -I/Users/fallahi/extlib/ALUGrid-1.23/include/duneinterface -DENABLE_ALUGRID -I/Users/fallahi/extlib/ALUGrid-1.23/include/parallel -I/Users/fallahi/svnwork/dune-trunk/dune-grid -I/Users/fallahi/svnwork/dune-trunk/dune-istl -DMPICH_IGNORE_CXX_SEEK -O2 -o gettingstarted gettingstarted-gettingstarted.o -Wl,-bind_at_load -L/Users/fallahi/extlib/boost-trunk/ -L/Users/fallahi/svnwork/dune-trunk/dune-grid/lib -L/Users/fallahi/svnwork/dune-trunk/dune-common/lib -L/Users/fallahi/extlib/ALUGrid-1.23/lib -L/Users/fallahi/extlib/metis-4.0 -L/Users/fallahi/extlib/openmpi-1.4.1/lib /Users/fallahi/svnwork/dune-trunk/dune-grid/lib/.libs/libdunegrid.a /Users/fallahi/extlib/ALUGrid-1.23/lib/libalugrid.a -lmetis /Users/fallahi/svnwork/dune-trunk/dune-common/lib/.libs/libdunecommon.a /Users/fallahi/extlib/openmpi-1.4.1/lib/libmpi.dylib /Users/fallahi/extlib/openmpi-1.4.1/lib/libopen-rte.dylib /Users/fallahi/extlib/openmpi-1.4.1/lib/libopen-pal.dylib -lutil -lm
> mpicxx -DHAVE_CONFIG_H -I. -I/Users/fallahi/svnwork/dune-trunk/dune-common -I/Users/fallahi/svnwork/dune-trunk/dune-grid -I/Users/fallahi/svnwork/dune-trunk/dune-istl -I. -DMPICH_IGNORE_CXX_SEEK -O2 -I/Users/fallahi/extlib/boost-trunk/include -D_REENTRANT -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H -DENABLE_MPI=1 -DMPICH_IGNORE_CXX_SEEK -O2 -I/Users/fallahi/extlib/boost-trunk/include -I/Users/fallahi/svnwork/dune-trunk/dune-common -I/Users/fallahi/svnwork/dune-trunk/dune-grid -I/Users/fallahi/svnwork/dune-trunk/dune-istl -D_REENTRANT -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H -DENABLE_MPI=1 -I/Users/fallahi/svnwork/dune-trunk/dune-common -DGRIDDIM=2 -DWORLDDIM=2 -DYASPGRID -D_REENTRANT -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H -DENABLE_MPI=1 -I/Users/fallahi/extlib/ALUGrid-1.23/include -I/Users/fallahi/extlib/ALUGrid-1.23/include/serial -I/Users/fallahi/extlib/ALUGrid-1.23/include/duneinterface -DENABLE_ALUGRID -I/Users/fallahi/extlib/ALUGrid-1.23/include/parallel -I/Users/fallahi/svnwork/dune-trunk/dune-grid -I/Users/fallahi/svnwork/dune-trunk/dune-istl -DMPICH_IGNORE_CXX_SEEK -O2 -MT traversal-traversal.o -MD -MP -MF .deps/traversal-traversal.Tpo -c -o traversal-traversal.o `test -f 'traversal.cc' || echo './'`traversal.cc
> mv -f .deps/traversal-traversal.Tpo .deps/traversal-traversal.Po
> /bin/sh ./libtool --tag=CXX --mode=link mpicxx -D_REENTRANT -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H -DENABLE_MPI=1 -DMPICH_IGNORE_CXX_SEEK -O2 -I/Users/fallahi/extlib/boost-trunk/include -I/Users/fallahi/svnwork/dune-trunk/dune-common -I/Users/fallahi/svnwork/dune-trunk/dune-grid -I/Users/fallahi/svnwork/dune-trunk/dune-istl -D_REENTRANT -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H -DENABLE_MPI=1 -I/Users/fallahi/svnwork/dune-trunk/dune-common -DGRIDDIM=2 -DWORLDDIM=2 -DYASPGRID -D_REENTRANT -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H -DENABLE_MPI=1 -I/Users/fallahi/extlib/ALUGrid-1.23/include -I/Users/fallahi/extlib/ALUGrid-1.23/include/serial -I/Users/fallahi/extlib/ALUGrid-1.23/include/duneinterface -DENABLE_ALUGRID -I/Users/fallahi/extlib/ALUGrid-1.23/include/parallel -I/Users/fallahi/svnwork/dune-trunk/dune-grid -I/Users/fallahi/svnwork/dune-trunk/dune-istl -DMPICH_IGNORE_CXX_SEEK -O2 -L/Users/fallahi/extlib/boost-trunk/ -o traversal traversal-traversal.o -L/Users/fallahi/svnwork/dune-trunk/dune-grid/lib -ldunegrid -L/Users/fallahi/svnwork/dune-trunk/dune-common/lib -ldunecommon -L/Users/fallahi/extlib/boost-trunk/ -L/Users/fallahi/svnwork/dune-trunk/dune-grid/lib -ldunegrid -L/Users/fallahi/extlib/ALUGrid-1.23/lib -lalugrid -L/Users/fallahi/extlib/openmpi-1.4.1/lib -lmpi -lopen-rte -lopen-pal -lutil -L/Users/fallahi/svnwork/dune-trunk/dune-common/lib -ldunecommon -L/Users/fallahi/extlib/openmpi-1.4.1/lib -lmpi -lopen-rte -lopen-pal -lutil -L/Users/fallahi/svnwork/dune-trunk/dune-grid/lib -ldunegrid -L/Users/fallahi/svnwork/dune-trunk/dune-common/lib -ldunecommon -L/Users/fallahi/svnwork/dune-trunk/dune-common/lib -ldunecommon -L/Users/fallahi/svnwork/dune-trunk/dune-grid/lib -ldunegrid -L/Users/fallahi/svnwork/dune-trunk/dune-common/lib -ldunecommon -lm -L/Users/fallahi/extlib/openmpi-1.4.1/lib -lmpi -lopen-rte -lopen-pal -lutil -lm
> libtool: link: warning: library `/Users/fallahi/extlib/ALUGrid-1.23/lib/libalugrid.la' was moved.
> libtool: link: warning: library `/Users/fallahi/extlib/ALUGrid-1.23/lib/libalugrid.la' was moved.
> libtool: link: mpicxx -D_REENTRANT -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H -DENABLE_MPI=1 -DMPICH_IGNORE_CXX_SEEK -O2 -I/Users/fallahi/extlib/boost-trunk/include -I/Users/fallahi/svnwork/dune-trunk/dune-common -I/Users/fallahi/svnwork/dune-trunk/dune-grid -I/Users/fallahi/svnwork/dune-trunk/dune-istl -D_REENTRANT -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H -DENABLE_MPI=1 -I/Users/fallahi/svnwork/dune-trunk/dune-common -DGRIDDIM=2 -DWORLDDIM=2 -DYASPGRID -D_REENTRANT -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H -DENABLE_MPI=1 -I/Users/fallahi/extlib/ALUGrid-1.23/include -I/Users/fallahi/extlib/ALUGrid-1.23/include/serial -I/Users/fallahi/extlib/ALUGrid-1.23/include/duneinterface -DENABLE_ALUGRID -I/Users/fallahi/extlib/ALUGrid-1.23/include/parallel -I/Users/fallahi/svnwork/dune-trunk/dune-grid -I/Users/fallahi/svnwork/dune-trunk/dune-istl -DMPICH_IGNORE_CXX_SEEK -O2 -o traversal traversal-traversal.o -Wl,-bind_at_load -L/Users/fallahi/extlib/boost-trunk/ -L/Users/fallahi/svnwork/dune-trunk/dune-grid/lib -L/Users/fallahi/svnwork/dune-trunk/dune-common/lib -L/Users/fallahi/extlib/ALUGrid-1.23/lib -L/Users/fallahi/extlib/metis-4.0 -L/Users/fallahi/extlib/openmpi-1.4.1/lib /Users/fallahi/svnwork/dune-trunk/dune-grid/lib/.libs/libdunegrid.a /Users/fallahi/extlib/ALUGrid-1.23/lib/libalugrid.a -lmetis /Users/fallahi/svnwork/dune-trunk/dune-common/lib/.libs/libdunecommon.a /Users/fallahi/extlib/openmpi-1.4.1/lib/libmpi.dylib /Users/fallahi/extlib/openmpi-1.4.1/lib/libopen-rte.dylib /Users/fallahi/extlib/openmpi-1.4.1/lib/libopen-pal.dylib -lutil -lm
> mpicxx -DHAVE_CONFIG_H -I. -I/Users/fallahi/svnwork/dune-trunk/dune-common -I/Users/fallahi/svnwork/dune-trunk/dune-grid -I/Users/fallahi/svnwork/dune-trunk/dune-istl -I. -DMPICH_IGNORE_CXX_SEEK -O2 -I/Users/fallahi/extlib/boost-trunk/include -D_REENTRANT -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H -DENABLE_MPI=1 -DMPICH_IGNORE_CXX_SEEK -O2 -I/Users/fallahi/extlib/boost-trunk/include -I/Users/fallahi/svnwork/dune-trunk/dune-common -I/Users/fallahi/svnwork/dune-trunk/dune-grid -I/Users/fallahi/svnwork/dune-trunk/dune-istl -D_REENTRANT -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H -DENABLE_MPI=1 -I/Users/fallahi/svnwork/dune-trunk/dune-common -DGRIDDIM=2 -DWORLDDIM=2 -DYASPGRID -D_REENTRANT -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H -DENABLE_MPI=1 -I/Users/fallahi/extlib/ALUGrid-1.23/include -I/Users/fallahi/extlib/ALUGrid-1.23/include/serial -I/Users/fallahi/extlib/ALUGrid-1.23/include/duneinterface -DENABLE_ALUGRID -I/Users/fallahi/extlib/ALUGrid-1.23/include/parallel -I/Users/fallahi/svnwork/dune-trunk/dune-grid -I/Users/fallahi/svnwork/dune-trunk/dune-istl -DMPICH_IGNORE_CXX_SEEK -O2 -MT integration-integration.o -MD -MP -MF .deps/integration-integration.Tpo -c -o integration-integration.o `test -f 'integration.cc' || echo './'`integration.cc
> /Users/fallahi/svnwork/dune-trunk/dune-grid/dune/grid/io/file/dgfparser/dgfyasp.hh: In member function ‘int Dune::DGFGridFactory<Dune::YaspGrid<dim> >::boundaryId(const Intersection&) const [with Intersection = Dune::Intersection<const Dune::YaspGrid<2>, Dune::YaspIntersection>, int dim = 2]’:
> /Users/fallahi/svnwork/dune-trunk/dune-grid/dune/grid/io/file/dgfparser/dgfparser.hh:540: instantiated from ‘void Dune::GridPtr<GridType>::initialize(Dune::DGFGridFactory<GridType>&) [with GridType = Dune::YaspGrid<2>]’
> /Users/fallahi/svnwork/dune-trunk/dune-grid/dune/grid/io/file/dgfparser/dgfparser.hh:355: instantiated from ‘Dune::GridPtr<GridType>::GridPtr(const std::string&, ompi_communicator_t*) [with GridType = Dune::YaspGrid<2>]’
> integration.cc:73: instantiated from here
> /Users/fallahi/svnwork/dune-trunk/dune-grid/dune/grid/io/file/dgfparser/dgfyasp.hh:104: warning: ‘boundaryId’ is deprecated (declared at /Users/fallahi/svnwork/dune-trunk/dune-grid/dune/grid/common/intersection.hh:231)
> mv -f .deps/integration-integration.Tpo .deps/integration-integration.Po
> /bin/sh ./libtool --tag=CXX --mode=link mpicxx -D_REENTRANT -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H -DENABLE_MPI=1 -DMPICH_IGNORE_CXX_SEEK -O2 -I/Users/fallahi/extlib/boost-trunk/include -I/Users/fallahi/svnwork/dune-trunk/dune-common -I/Users/fallahi/svnwork/dune-trunk/dune-grid -I/Users/fallahi/svnwork/dune-trunk/dune-istl -D_REENTRANT -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H -DENABLE_MPI=1 -I/Users/fallahi/svnwork/dune-trunk/dune-common -DGRIDDIM=2 -DWORLDDIM=2 -DYASPGRID -D_REENTRANT -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H -DENABLE_MPI=1 -I/Users/fallahi/extlib/ALUGrid-1.23/include -I/Users/fallahi/extlib/ALUGrid-1.23/include/serial -I/Users/fallahi/extlib/ALUGrid-1.23/include/duneinterface -DENABLE_ALUGRID -I/Users/fallahi/extlib/ALUGrid-1.23/include/parallel -I/Users/fallahi/svnwork/dune-trunk/dune-grid -I/Users/fallahi/svnwork/dune-trunk/dune-istl -DMPICH_IGNORE_CXX_SEEK -O2 -L/Users/fallahi/extlib/boost-trunk/ -o integration integration-integration.o -L/Users/fallahi/svnwork/dune-trunk/dune-grid/lib -ldunegrid -L/Users/fallahi/svnwork/dune-trunk/dune-common/lib -ldunecommon -L/Users/fallahi/extlib/boost-trunk/ -L/Users/fallahi/svnwork/dune-trunk/dune-grid/lib -ldunegrid -L/Users/fallahi/extlib/ALUGrid-1.23/lib -lalugrid -L/Users/fallahi/extlib/openmpi-1.4.1/lib -lmpi -lopen-rte -lopen-pal -lutil -L/Users/fallahi/svnwork/dune-trunk/dune-common/lib -ldunecommon -L/Users/fallahi/extlib/openmpi-1.4.1/lib -lmpi -lopen-rte -lopen-pal -lutil -L/Users/fallahi/svnwork/dune-trunk/dune-grid/lib -ldunegrid -L/Users/fallahi/svnwork/dune-trunk/dune-common/lib -ldunecommon -L/Users/fallahi/svnwork/dune-trunk/dune-common/lib -ldunecommon -L/Users/fallahi/svnwork/dune-trunk/dune-grid/lib -ldunegrid -L/Users/fallahi/svnwork/dune-trunk/dune-common/lib -ldunecommon -lm -L/Users/fallahi/extlib/openmpi-1.4.1/lib -lmpi -lopen-rte -lopen-pal -lutil -lm
> libtool: link: warning: library `/Users/fallahi/extlib/ALUGrid-1.23/lib/libalugrid.la' was moved.
> libtool: link: warning: library `/Users/fallahi/extlib/ALUGrid-1.23/lib/libalugrid.la' was moved.
> libtool: link: mpicxx -D_REENTRANT -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H -DENABLE_MPI=1 -DMPICH_IGNORE_CXX_SEEK -O2 -I/Users/fallahi/extlib/boost-trunk/include -I/Users/fallahi/svnwork/dune-trunk/dune-common -I/Users/fallahi/svnwork/dune-trunk/dune-grid -I/Users/fallahi/svnwork/dune-trunk/dune-istl -D_REENTRANT -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H -DENABLE_MPI=1 -I/Users/fallahi/svnwork/dune-trunk/dune-common -DGRIDDIM=2 -DWORLDDIM=2 -DYASPGRID -D_REENTRANT -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H -DENABLE_MPI=1 -I/Users/fallahi/extlib/ALUGrid-1.23/include -I/Users/fallahi/extlib/ALUGrid-1.23/include/serial -I/Users/fallahi/extlib/ALUGrid-1.23/include/duneinterface -DENABLE_ALUGRID -I/Users/fallahi/extlib/ALUGrid-1.23/include/parallel -I/Users/fallahi/svnwork/dune-trunk/dune-grid -I/Users/fallahi/svnwork/dune-trunk/dune-istl -DMPICH_IGNORE_CXX_SEEK -O2 -o integration integration-integration.o -Wl,-bind_at_load -L/Users/fallahi/extlib/boost-trunk/ -L/Users/fallahi/svnwork/dune-trunk/dune-grid/lib -L/Users/fallahi/svnwork/dune-trunk/dune-common/lib -L/Users/fallahi/extlib/ALUGrid-1.23/lib -L/Users/fallahi/extlib/metis-4.0 -L/Users/fallahi/extlib/openmpi-1.4.1/lib /Users/fallahi/svnwork/dune-trunk/dune-grid/lib/.libs/libdunegrid.a /Users/fallahi/extlib/ALUGrid-1.23/lib/libalugrid.a -lmetis /Users/fallahi/svnwork/dune-trunk/dune-common/lib/.libs/libdunecommon.a /Users/fallahi/extlib/openmpi-1.4.1/lib/libmpi.dylib /Users/fallahi/extlib/openmpi-1.4.1/lib/libopen-rte.dylib /Users/fallahi/extlib/openmpi-1.4.1/lib/libopen-pal.dylib -lutil -lm
> mpicxx -DHAVE_CONFIG_H -I. -I/Users/fallahi/svnwork/dune-trunk/dune-common -I/Users/fallahi/svnwork/dune-trunk/dune-grid -I/Users/fallahi/svnwork/dune-trunk/dune-istl -I. -DMPICH_IGNORE_CXX_SEEK -O2 -I/Users/fallahi/extlib/boost-trunk/include -D_REENTRANT -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H -DENABLE_MPI=1 -DMPICH_IGNORE_CXX_SEEK -O2 -I/Users/fallahi/extlib/boost-trunk/include -I/Users/fallahi/svnwork/dune-trunk/dune-common -I/Users/fallahi/svnwork/dune-trunk/dune-grid -I/Users/fallahi/svnwork/dune-trunk/dune-istl -D_REENTRANT -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H -DENABLE_MPI=1 -I/Users/fallahi/svnwork/dune-trunk/dune-common -DGRIDDIM=2 -DWORLDDIM=2 -DYASPGRID -D_REENTRANT -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H -DENABLE_MPI=1 -I/Users/fallahi/extlib/ALUGrid-1.23/include -I/Users/fallahi/extlib/ALUGrid-1.23/include/serial -I/Users/fallahi/extlib/ALUGrid-1.23/include/duneinterface -DENABLE_ALUGRID -I/Users/fallahi/extlib/ALUGrid-1.23/include/parallel -I/Users/fallahi/svnwork/dune-trunk/dune-grid -I/Users/fallahi/svnwork/dune-trunk/dune-istl -DMPICH_IGNORE_CXX_SEEK -O2 -MT othergrids-othergrids.o -MD -MP -MF .deps/othergrids-othergrids.Tpo -c -o othergrids-othergrids.o `test -f 'othergrids.cc' || echo './'`othergrids.cc
> In file included from /Users/fallahi/svnwork/dune-trunk/dune-grid/dune/grid/alugrid/persistentcontainer.hh:5,
> from /Users/fallahi/svnwork/dune-trunk/dune-grid/dune/grid/alugrid.hh:14,
> from unitcube_alugrid.hh:7,
> from unitcube.hh:53,
> from othergrids.cc:4:
> /Users/fallahi/svnwork/dune-trunk/dune-grid/dune/grid/utility/persistentcontainer.hh:5:25: error: unordered_map: No such file or directory
> In file included from /Users/fallahi/svnwork/dune-trunk/dune-grid/dune/grid/onedgrid.hh:22,
> from othergrids.cc:7:
> /Users/fallahi/svnwork/dune-trunk/dune-grid/dune/grid/onedgrid/onedgridentity.hh: In member function ‘typename GridImp::Codim<codim>::EntityPointer Dune::OneDGridEntity<0, dim, GridImp>::subEntity(int) const’:
> /Users/fallahi/svnwork/dune-trunk/dune-grid/dune/grid/onedgrid/onedgridentity.hh:332: warning: ‘topologyId’ is deprecated (declared at /Users/fallahi/svnwork/dune-trunk/dune-grid/dune/grid/genericgeometry/conversion.hh:684)
> make[2]: *** [othergrids-othergrids.o] Error 1
> make[1]: *** [all-recursive] Error 1
> make: *** [all] Error 2
> --- Failed to build dune-grid-howto ---
> Terminating dunecontrol due to previous errors!
>
>
> On Dec 1, 2010, at 3:04 PM, Oliver Sander wrote:
>
>
>> Please update dune-common and try again.
>> --
>> Oliver
>>
>> Am 01.12.2010 14:26, schrieb arya fallahi:
>>
>>> Dear Dune,
>>>
>>> I just updated my dune copy and I faced with problems in compilations. Would you please have a look?
>>>
>>> Thanks,
>>> Arya
>>>
>>> pcp034701:dune-trunk fallahi$ uname -a
>>> Darwin pcp034701.psi.ch 10.5.0 Darwin Kernel Version 10.5.0: Fri Nov 5 23:20:39 PDT 2010; root:xnu-1504.9.17~1/RELEASE_I386 i386
>>>
>>>
>>> pcp034701:dune-trunk fallahi$ mpicxx --version
>>> i686-apple-darwin10-g++-4.2.1 (GCC) 4.2.1 (Apple Inc. build 5659)
>>> Copyright (C) 2007 Free Software Foundation, Inc.
>>> This is free software; see the source for copying conditions. There is NO
>>> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
>>>
>>> pcp034701:dune-trunk fallahi$ ./dune-common/bin/dunecontrol update all
>>> --- going to build dune-common dune-grid dune-istl dune-grid-howto hades ---
>>> --- calling update for dune-common ---
>>> At revision 6282.
>>> --- dune-common done ---
>>> --- calling update for dune-grid ---
>>> At revision 7198.
>>> --- dune-grid done ---
>>> --- calling update for dune-istl ---
>>> At revision 1413.
>>> --- dune-istl done ---
>>> --- calling update for dune-grid-howto ---
>>> At revision 338.
>>> --- dune-grid-howto done ---
>>> --- calling update for hades ---
>>> At revision 2233.
>>> --- hades done ---
>>> --- done ---
>>>
>>>
>>> Found the following Dune-components:
>>>
>>> ----------------------------------------
>>>
>>> dune-common.............: version 2.1-svn
>>> ALBERTA.................: no
>>> ALUGrid.................: version 1.23
>>> AlgLib for DUNE.........: no
>>> AmiraMesh...............: no
>>> GMP.....................: no
>>> Grape...................: no
>>> MPI.....................: yes (OpenMPI)
>>> OpenGL..................: no
>>> UG......................: no
>>> psurface................: no
>>>
>>> ----------------------------------------
>>>
>>> See ./configure --help and config.log for reasons why a component wasn't found
>>>
>>> configure: creating ./config.status
>>> config.status: creating Makefile
>>> config.status: creating lib/Makefile
>>> config.status: creating doc/appl/refelements/Makefile
>>> config.status: creating doc/appl/Makefile
>>> config.status: creating doc/refinement/Makefile
>>> config.status: creating doc/doxygen/Makefile
>>> config.status: creating doc/doxygen/Doxyfile
>>> config.status: creating doc/grids/Makefile
>>> config.status: creating doc/grids/amc/Makefile
>>> config.status: creating doc/grids/amiramesh/Makefile
>>> config.status: creating doc/grids/dgf/Makefile
>>> config.status: creating doc/grids/gridfactory/Makefile
>>> config.status: creating doc/grids/gmsh/Makefile
>>> config.status: creating doc/grids/starcd/Makefile
>>> config.status: creating doc/Makefile
>>> config.status: creating dune/Makefile
>>> config.status: creating dune/grid/Makefile
>>> config.status: creating dune/grid/test/Makefile
>>> config.status: creating dune/grid/common/test/Makefile
>>> config.status: creating dune/grid/common/quadraturerules/Makefile
>>> config.status: creating dune/grid/common/refinement/Makefile
>>> config.status: creating dune/grid/common/Makefile
>>> config.status: creating dune/grid/uggrid/Makefile
>>> config.status: creating dune/grid/sgrid/Makefile
>>> config.status: creating dune/grid/albertagrid/Makefile
>>> config.status: creating dune/grid/albertagrid/test/Makefile
>>> config.status: creating dune/grid/yaspgrid/Makefile
>>> config.status: creating dune/grid/onedgrid/Makefile
>>> config.status: creating dune/grid/utility/Makefile
>>> config.status: creating dune/grid/utility/test/Makefile
>>> config.status: creating dune/grid/alugrid/common/Makefile
>>> config.status: creating dune/grid/alugrid/2d/Makefile
>>> config.status: creating dune/grid/alugrid/3d/Makefile
>>> config.status: creating dune/grid/alugrid/Makefile
>>> config.status: creating dune/grid/io/file/test/Makefile
>>> config.status: creating dune/grid/io/file/amiramesh/Makefile
>>> config.status: creating dune/grid/io/file/dgfparser/Makefile
>>> config.status: creating dune/grid/io/file/dgfparser/test/Makefile
>>> config.status: creating dune/grid/io/file/dgfparser/utils/Makefile
>>> config.status: creating dune/grid/io/file/gnuplot/Makefile
>>> config.status: creating dune/grid/io/file/vtk/Makefile
>>> config.status: creating dune/grid/io/file/Makefile
>>> config.status: creating dune/grid/io/visual/grape/Makefile
>>> config.status: creating dune/grid/io/visual/Makefile
>>> config.status: creating dune/grid/io/Makefile
>>> config.status: creating dune/grid/genericgeometry/Makefile
>>> config.status: creating dune/grid/genericgeometry/test/Makefile
>>> config.status: creating dune/grid/geometrygrid/Makefile
>>> config.status: creating m4/Makefile
>>> config.status: creating dune-grid.pc
>>> config.status: creating config.h
>>> config.status: config.h is unchanged
>>> config.status: executing depfiles commands
>>> config.status: executing libtool commands
>>> --- calling make for dune-grid ---
>>> make
>>> cd .&& /bin/sh /Users/fallahi/svnwork/dune-trunk/dune-grid/missing --run autoheader
>>> configure.ac:10: warning: PKG_PROG_PKG_CONFIG is m4_require'd but not m4_defun'd
>>> aclocal.m4:11357: DUNE_CHECK_ALL is expanded from...
>>> configure.ac:10: the top level
>>> aclocal.m4:11592: DUNE_COMMON_CHECKS is expanded from...
>>> dependencies.m4:26: DUNE_CHECK_MOD_DEPENDENCIES is expanded from...
>>> aclocal.m4:11260: DUNE_CHECK_MODULES is expanded from...
>>> aclocal.m4:11601: DUNE_COMMON_CHECK_MODULE is expanded from...
>>> rm -f stamp-h1
>>> touch config.h.in
>>> cd .&& /bin/sh ./config.status config.h
>>> config.status: creating config.h
>>> config.status: config.h is unchanged
>>> make all-recursive
>>> Making all in dune
>>> Making all in grid
>>> Making all in genericgeometry
>>> Making all in test
>>> make[5]: Nothing to be done for `all'.
>>> make[5]: Nothing to be done for `all-am'.
>>> Making all in common
>>> Making all in refinement
>>> make[5]: Nothing to be done for `all'.
>>> Making all in test
>>> make[5]: Nothing to be done for `all'.
>>> Making all in quadraturerules
>>> /bin/sh ../../../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../../../.. -I/Users/fallahi/svnwork/dune-trunk/dune-common -I../../../.. -DMPICH_IGNORE_CXX_SEEK -O2 -DMPICH_IGNORE_CXX_SEEK -O2 -MT quadraturerules.lo -MD -MP -MF .deps/quadraturerules.Tpo -c -o quadraturerules.lo quadraturerules.cc
>>> libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../../../.. -I/Users/fallahi/svnwork/dune-trunk/dune-common -I../../../.. -DMPICH_IGNORE_CXX_SEEK -O2 -DMPICH_IGNORE_CXX_SEEK -O2 -MT quadraturerules.lo -MD -MP -MF .deps/quadraturerules.Tpo -c quadraturerules.cc -o quadraturerules.o
>>> In file included from ../quadraturerules.hh:15,
>>> from quadraturerules.cc:3:
>>> /Users/fallahi/svnwork/dune-trunk/dune-common/dune/common/geometrytype.hh:153:27: error: invalid suffix "b0011" on integer constant
>>> /Users/fallahi/svnwork/dune-trunk/dune-common/dune/common/geometrytype.hh:160:27: error: invalid suffix "b0101" on integer constant
>>> /Users/fallahi/svnwork/dune-trunk/dune-common/dune/common/geometrytype.hh:206:63: error: invalid suffix "b0001" on integer constant
>>> /Users/fallahi/svnwork/dune-trunk/dune-common/dune/common/geometrytype.hh:211:63: error: invalid suffix "b0011" on integer constant
>>> /Users/fallahi/svnwork/dune-trunk/dune-common/dune/common/geometrytype.hh:216:63: error: invalid suffix "b0001" on integer constant
>>> /Users/fallahi/svnwork/dune-trunk/dune-common/dune/common/geometrytype.hh:221:63: error: invalid suffix "b0011" on integer constant
>>> /Users/fallahi/svnwork/dune-trunk/dune-common/dune/common/geometrytype.hh:226:63: error: invalid suffix "b0101" on integer constant
>>> /Users/fallahi/svnwork/dune-trunk/dune-common/dune/common/geometrytype.hh:231:63: error: invalid suffix "b0111" on integer constant
>>> make[5]: *** [quadraturerules.lo] Error 1
>>> make[4]: *** [all-recursive] Error 1
>>> make[3]: *** [all-recursive] Error 1
>>> make[2]: *** [all-recursive] Error 1
>>> make[1]: *** [all-recursive] Error 1
>>> make: *** [all] Error 2
>>> --- Failed to build dune-grid ---
>>> Terminating dunecontrol due to previous errors!
>>>
>>> real 0m56.449s
>>> user 0m37.592s
>>> sys 0m18.254s
>>>
>>>
>>> _______________________________________________
>>> Dune mailing list
>>> Dune at dune-project.org
>>> http://lists.dune-project.org/mailman/listinfo/dune
>>>
>>>
>>
>> --
>> ************************************************************************
>> * Oliver Sander ** email: sander at mi.fu-berlin.de *
>> * Freie Universität Berlin ** phone: + 49 (30) 838 75348 *
>> * Institut für Mathematik ** URL : page.mi.fu-berlin.de/~sander *
>> * Arnimallee 6 ** -------------------------------------*
>> * 14195 Berlin, Germany ** Member of MATHEON (www.matheon.de) *
>> ************************************************************************
>>
>>
>> _______________________________________________
>> Dune mailing list
>> Dune at dune-project.org
>> http://lists.dune-project.org/mailman/listinfo/dune
>>
> Arya Fallahi,
> Dr. sc. techn., dipl. El. Ing. ETH,
> Computational Accelerator Scientist
> Paul Scherrer Institute (PSI),
> CH-5232 Villigen, Switzerland,
> arya.fallahi at psi.ch,
> +41(0)56 310 50 17
>
>
>
--
************************************************************************
* Oliver Sander ** email: sander at mi.fu-berlin.de *
* Freie Universität Berlin ** phone: + 49 (30) 838 75348 *
* Institut für Mathematik ** URL : page.mi.fu-berlin.de/~sander *
* Arnimallee 6 ** -------------------------------------*
* 14195 Berlin, Germany ** Member of MATHEON (www.matheon.de) *
************************************************************************
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