[Dune] Dune breaks in dune-grid
Oliver Sander
sander at mi.fu-berlin.de
Wed Dec 1 16:01:35 CET 2010
I am not familiar with that part of the code, but it is probably
not too difficult to fix. You could try to fix it yourself and send
us the patch.
Am 01.12.2010 15:56, schrieb arya fallahi:
> Thanks for mentioning the problem. Should I go and change it myself? The files are related to the dune-project. Why isn't it considered in the code? I mean why don't you correct it and then I can do an update.
>
> Best,
> Arya
>
> On Dec 1, 2010, at 3:45 PM, Oliver Sander wrote:
>
>
>> Apparently ALUGrid uses an unordered_map (the stl hash map implementation)
>> and doesn't include all necessary headers.
>>
>> --
>> OS
>>
>> Am 01.12.2010 15:39, schrieb arya fallahi:
>>
>>> What do you mean? Is it my problem, or should I wait for the dune team?
>>>
>>> Best,
>>> Arya
>>>
>>> On Dec 1, 2010, at 3:25 PM, Oliver Sander wrote:
>>>
>>>
>>>
>>>> That's something else.
>>>> Best,
>>>> Oliver
>>>>
>>>> Am 01.12.2010 15:20, schrieb arya fallahi:
>>>>
>>>>
>>>>> Thanks Oliver,
>>>>>
>>>>> Now it breaks in Dune-grid-howto.
>>>>>
>>>>> In the following, you see the retrieved message.
>>>>>
>>>>> Best
>>>>> Arya
>>>>>
>>>>> Found the following Dune-components:
>>>>>
>>>>> ----------------------------------------
>>>>>
>>>>> dune-common.............: version 2.1-svn
>>>>> dune-grid...............: version 2.1-svn
>>>>> dune-istl...............: version 2.1-svn
>>>>> ALBERTA.................: no
>>>>> ALUGrid.................: version 1.23
>>>>> AlgLib for DUNE.........: no
>>>>> AmiraMesh...............: no
>>>>> BLAS....................: no
>>>>> GMP.....................: no
>>>>> Grape...................: no
>>>>> METIS...................: yes
>>>>> MPI.....................: yes (OpenMPI)
>>>>> OpenGL..................: no
>>>>> ParMETIS................: no
>>>>> SuperLU-DIST............: no
>>>>> SuperLU.................: no
>>>>> UG......................: no
>>>>> psurface................: no
>>>>>
>>>>> ----------------------------------------
>>>>>
>>>>> See ./configure --help and config.log for reasons why a component wasn't found
>>>>>
>>>>> --- calling make for dune-grid-howto ---
>>>>> make
>>>>> cd .&& /bin/sh /Users/fallahi/svnwork/dune-trunk/dune-grid-howto/missing --run autoheader
>>>>> configure.ac:45: warning: PKG_PROG_PKG_CONFIG is m4_require'd but not m4_defun'd
>>>>> aclocal.m4:11664: DUNE_CHECK_ALL is expanded from...
>>>>> configure.ac:45: the top level
>>>>> aclocal.m4:11871: DUNE_COMMON_CHECKS is expanded from...
>>>>> dependencies.m4:40: DUNE_CHECK_MOD_DEPENDENCIES is expanded from...
>>>>> aclocal.m4:11567: DUNE_CHECK_MODULES is expanded from...
>>>>> aclocal.m4:11880: DUNE_COMMON_CHECK_MODULE is expanded from...
>>>>> aclocal.m4:9551: DUNE_GRID_CHECK_MODULE is expanded from...
>>>>> aclocal.m4:8812: DUNE_ISTL_CHECK_MODULE is expanded from...
>>>>> rm -f stamp-h1
>>>>> touch config.h.in
>>>>> make all-recursive
>>>>> Making all in doc
>>>>> make[2]: Nothing to be done for `all'.
>>>>> Making all in grids
>>>>> make[2]: Nothing to be done for `all'.
>>>>> cd .&& /bin/sh ./config.status config.h
>>>>> config.status: creating config.h
>>>>> config.status: config.h is unchanged
>>>>> mpicxx -DHAVE_CONFIG_H -I. -I/Users/fallahi/svnwork/dune-trunk/dune-common -I/Users/fallahi/svnwork/dune-trunk/dune-grid -I/Users/fallahi/svnwork/dune-trunk/dune-istl -I. -DMPICH_IGNORE_CXX_SEEK -O2 -I/Users/fallahi/extlib/boost-trunk/include -D_REENTRANT -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H -DENABLE_MPI=1 -DMPICH_IGNORE_CXX_SEEK -O2 -I/Users/fallahi/extlib/boost-trunk/include -I/Users/fallahi/svnwork/dune-trunk/dune-common -I/Users/fallahi/svnwork/dune-trunk/dune-grid -I/Users/fallahi/svnwork/dune-trunk/dune-istl -D_REENTRANT -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H -DENABLE_MPI=1 -I/Users/fallahi/svnwork/dune-trunk/dune-common -DGRIDDIM=2 -DWORLDDIM=2 -DYASPGRID -D_REENTRANT -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H -DENABLE_MPI=1 -I/Users/fallahi/extlib/ALUGrid-1.23/include -I/Users/fallahi/extlib/ALUGrid-1.23/include/serial -I/Users/fallahi/extlib/ALUGrid-1.23/include/duneinterface -DENABLE_ALUGRID -I/Users/fallahi/extlib/ALUGrid-1.23/include/parallel -I/Users/fallahi/svnwork/dune-trunk/dune-grid -I/Users/fallahi/svnwork/dune-trunk/dune-istl -DMPICH_IGNORE_CXX_SEEK -O2 -MT gettingstarted-gettingstarted.o -MD -MP -MF .deps/gettingstarted-gettingstarted.Tpo -c -o gettingstarted-gettingstarted.o `test -f 'gettingstarted.cc' || echo './'`gettingstarted.cc
>>>>> mv -f .deps/gettingstarted-gettingstarted.Tpo .deps/gettingstarted-gettingstarted.Po
>>>>> /bin/sh ./libtool --tag=CXX --mode=link mpicxx -D_REENTRANT -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H -DENABLE_MPI=1 -DMPICH_IGNORE_CXX_SEEK -O2 -I/Users/fallahi/extlib/boost-trunk/include -I/Users/fallahi/svnwork/dune-trunk/dune-common -I/Users/fallahi/svnwork/dune-trunk/dune-grid -I/Users/fallahi/svnwork/dune-trunk/dune-istl -D_REENTRANT -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H -DENABLE_MPI=1 -I/Users/fallahi/svnwork/dune-trunk/dune-common -DGRIDDIM=2 -DWORLDDIM=2 -DYASPGRID -D_REENTRANT -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H -DENABLE_MPI=1 -I/Users/fallahi/extlib/ALUGrid-1.23/include -I/Users/fallahi/extlib/ALUGrid-1.23/include/serial -I/Users/fallahi/extlib/ALUGrid-1.23/include/duneinterface -DENABLE_ALUGRID -I/Users/fallahi/extlib/ALUGrid-1.23/include/parallel -I/Users/fallahi/svnwork/dune-trunk/dune-grid -I/Users/fallahi/svnwork/dune-trunk/dune-istl -DMPICH_IGNORE_CXX_SEEK -O2 -L/Users/fallahi/extlib/boost-trunk/ -o gettingstarted gettingstarted-gettingstarted.o -L/Users/fallahi/svnwork/dune-trunk/dune-grid/lib -ldunegrid -L/Users/fallahi/svnwork/dune-trunk/dune-common/lib -ldunecommon -L/Users/fallahi/extlib/boost-trunk/ -L/Users/fallahi/svnwork/dune-trunk/dune-grid/lib -ldunegrid -L/Users/fallahi/extlib/ALUGrid-1.23/lib -lalugrid -L/Users/fallahi/extlib/openmpi-1.4.1/lib -lmpi -lopen-rte -lopen-pal -lutil -L/Users/fallahi/svnwork/dune-trunk/dune-common/lib -ldunecommon -L/Users/fallahi/extlib/openmpi-1.4.1/lib -lmpi -lopen-rte -lopen-pal -lutil -L/Users/fallahi/svnwork/dune-trunk/dune-grid/lib -ldunegrid -L/Users/fallahi/svnwork/dune-trunk/dune-common/lib -ldunecommon -L/Users/fallahi/svnwork/dune-trunk/dune-common/lib -ldunecommon -L/Users/fallahi/svnwork/dune-trunk/dune-grid/lib -ldunegrid -L/Users/fallahi/svnwork/dune-trunk/dune-common/lib -ldunecommon -lm -L/Users/fallahi/extlib/openmpi-1.4.1/lib -lmpi -lopen-rte -lopen-pal -lutil -lm
>>>>> libtool: link: warning: library `/Users/fallahi/extlib/ALUGrid-1.23/lib/libalugrid.la' was moved.
>>>>> libtool: link: warning: library `/Users/fallahi/extlib/ALUGrid-1.23/lib/libalugrid.la' was moved.
>>>>> libtool: link: mpicxx -D_REENTRANT -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H -DENABLE_MPI=1 -DMPICH_IGNORE_CXX_SEEK -O2 -I/Users/fallahi/extlib/boost-trunk/include -I/Users/fallahi/svnwork/dune-trunk/dune-common -I/Users/fallahi/svnwork/dune-trunk/dune-grid -I/Users/fallahi/svnwork/dune-trunk/dune-istl -D_REENTRANT -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H -DENABLE_MPI=1 -I/Users/fallahi/svnwork/dune-trunk/dune-common -DGRIDDIM=2 -DWORLDDIM=2 -DYASPGRID -D_REENTRANT -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H -DENABLE_MPI=1 -I/Users/fallahi/extlib/ALUGrid-1.23/include -I/Users/fallahi/extlib/ALUGrid-1.23/include/serial -I/Users/fallahi/extlib/ALUGrid-1.23/include/duneinterface -DENABLE_ALUGRID -I/Users/fallahi/extlib/ALUGrid-1.23/include/parallel -I/Users/fallahi/svnwork/dune-trunk/dune-grid -I/Users/fallahi/svnwork/dune-trunk/dune-istl -DMPICH_IGNORE_CXX_SEEK -O2 -o gettingstarted gettingstarted-gettingstarted.o -Wl,-bind_at_load -L/Users/fallahi/extlib/boost-trunk/ -L/Users/fallahi/svnwork/dune-trunk/dune-grid/lib -L/Users/fallahi/svnwork/dune-trunk/dune-common/lib -L/Users/fallahi/extlib/ALUGrid-1.23/lib -L/Users/fallahi/extlib/metis-4.0 -L/Users/fallahi/extlib/openmpi-1.4.1/lib /Users/fallahi/svnwork/dune-trunk/dune-grid/lib/.libs/libdunegrid.a /Users/fallahi/extlib/ALUGrid-1.23/lib/libalugrid.a -lmetis /Users/fallahi/svnwork/dune-trunk/dune-common/lib/.libs/libdunecommon.a /Users/fallahi/extlib/openmpi-1.4.1/lib/libmpi.dylib /Users/fallahi/extlib/openmpi-1.4.1/lib/libopen-rte.dylib /Users/fallahi/extlib/openmpi-1.4.1/lib/libopen-pal.dylib -lutil -lm
>>>>> mpicxx -DHAVE_CONFIG_H -I. -I/Users/fallahi/svnwork/dune-trunk/dune-common -I/Users/fallahi/svnwork/dune-trunk/dune-grid -I/Users/fallahi/svnwork/dune-trunk/dune-istl -I. -DMPICH_IGNORE_CXX_SEEK -O2 -I/Users/fallahi/extlib/boost-trunk/include -D_REENTRANT -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H -DENABLE_MPI=1 -DMPICH_IGNORE_CXX_SEEK -O2 -I/Users/fallahi/extlib/boost-trunk/include -I/Users/fallahi/svnwork/dune-trunk/dune-common -I/Users/fallahi/svnwork/dune-trunk/dune-grid -I/Users/fallahi/svnwork/dune-trunk/dune-istl -D_REENTRANT -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H -DENABLE_MPI=1 -I/Users/fallahi/svnwork/dune-trunk/dune-common -DGRIDDIM=2 -DWORLDDIM=2 -DYASPGRID -D_REENTRANT -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H -DENABLE_MPI=1 -I/Users/fallahi/extlib/ALUGrid-1.23/include -I/Users/fallahi/extlib/ALUGrid-1.23/include/serial -I/Users/fallahi/extlib/ALUGrid-1.23/include/duneinterface -DENABLE_ALUGRID -I/Users/fallahi/extlib/ALUGrid-1.23/include/parallel -I/Users/fallahi/svnwork/dune-trunk/dune-grid -I/Users/fallahi/svnwork/dune-trunk/dune-istl -DMPICH_IGNORE_CXX_SEEK -O2 -MT traversal-traversal.o -MD -MP -MF .deps/traversal-traversal.Tpo -c -o traversal-traversal.o `test -f 'traversal.cc' || echo './'`traversal.cc
>>>>> mv -f .deps/traversal-traversal.Tpo .deps/traversal-traversal.Po
>>>>> /bin/sh ./libtool --tag=CXX --mode=link mpicxx -D_REENTRANT -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H -DENABLE_MPI=1 -DMPICH_IGNORE_CXX_SEEK -O2 -I/Users/fallahi/extlib/boost-trunk/include -I/Users/fallahi/svnwork/dune-trunk/dune-common -I/Users/fallahi/svnwork/dune-trunk/dune-grid -I/Users/fallahi/svnwork/dune-trunk/dune-istl -D_REENTRANT -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H -DENABLE_MPI=1 -I/Users/fallahi/svnwork/dune-trunk/dune-common -DGRIDDIM=2 -DWORLDDIM=2 -DYASPGRID -D_REENTRANT -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H -DENABLE_MPI=1 -I/Users/fallahi/extlib/ALUGrid-1.23/include -I/Users/fallahi/extlib/ALUGrid-1.23/include/serial -I/Users/fallahi/extlib/ALUGrid-1.23/include/duneinterface -DENABLE_ALUGRID -I/Users/fallahi/extlib/ALUGrid-1.23/include/parallel -I/Users/fallahi/svnwork/dune-trunk/dune-grid -I/Users/fallahi/svnwork/dune-trunk/dune-istl -DMPICH_IGNORE_CXX_SEEK -O2 -L/Users/fallahi/extlib/boost-trunk/ -o traversal traversal-traversal.o -L/Users/fallahi/svnwork/dune-trunk/dune-grid/lib -ldunegrid -L/Users/fallahi/svnwork/dune-trunk/dune-common/lib -ldunecommon -L/Users/fallahi/extlib/boost-trunk/ -L/Users/fallahi/svnwork/dune-trunk/dune-grid/lib -ldunegrid -L/Users/fallahi/extlib/ALUGrid-1.23/lib -lalugrid -L/Users/fallahi/extlib/openmpi-1.4.1/lib -lmpi -lopen-rte -lopen-pal -lutil -L/Users/fallahi/svnwork/dune-trunk/dune-common/lib -ldunecommon -L/Users/fallahi/extlib/openmpi-1.4.1/lib -lmpi -lopen-rte -lopen-pal -lutil -L/Users/fallahi/svnwork/dune-trunk/dune-grid/lib -ldunegrid -L/Users/fallahi/svnwork/dune-trunk/dune-common/lib -ldunecommon -L/Users/fallahi/svnwork/dune-trunk/dune-common/lib -ldunecommon -L/Users/fallahi/svnwork/dune-trunk/dune-grid/lib -ldunegrid -L/Users/fallahi/svnwork/dune-trunk/dune-common/lib -ldunecommon -lm -L/Users/fallahi/extlib/openmpi-1.4.1/lib -lmpi -lopen-rte -lopen-pal -lutil -lm
>>>>> libtool: link: warning: library `/Users/fallahi/extlib/ALUGrid-1.23/lib/libalugrid.la' was moved.
>>>>> libtool: link: warning: library `/Users/fallahi/extlib/ALUGrid-1.23/lib/libalugrid.la' was moved.
>>>>> libtool: link: mpicxx -D_REENTRANT -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H -DENABLE_MPI=1 -DMPICH_IGNORE_CXX_SEEK -O2 -I/Users/fallahi/extlib/boost-trunk/include -I/Users/fallahi/svnwork/dune-trunk/dune-common -I/Users/fallahi/svnwork/dune-trunk/dune-grid -I/Users/fallahi/svnwork/dune-trunk/dune-istl -D_REENTRANT -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H -DENABLE_MPI=1 -I/Users/fallahi/svnwork/dune-trunk/dune-common -DGRIDDIM=2 -DWORLDDIM=2 -DYASPGRID -D_REENTRANT -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H -DENABLE_MPI=1 -I/Users/fallahi/extlib/ALUGrid-1.23/include -I/Users/fallahi/extlib/ALUGrid-1.23/include/serial -I/Users/fallahi/extlib/ALUGrid-1.23/include/duneinterface -DENABLE_ALUGRID -I/Users/fallahi/extlib/ALUGrid-1.23/include/parallel -I/Users/fallahi/svnwork/dune-trunk/dune-grid -I/Users/fallahi/svnwork/dune-trunk/dune-istl -DMPICH_IGNORE_CXX_SEEK -O2 -o traversal traversal-traversal.o -Wl,-bind_at_load -L/Users/fallahi/extlib/boost-trunk/ -L/Users/fallahi/svnwork/dune-trunk/dune-grid/lib -L/Users/fallahi/svnwork/dune-trunk/dune-common/lib -L/Users/fallahi/extlib/ALUGrid-1.23/lib -L/Users/fallahi/extlib/metis-4.0 -L/Users/fallahi/extlib/openmpi-1.4.1/lib /Users/fallahi/svnwork/dune-trunk/dune-grid/lib/.libs/libdunegrid.a /Users/fallahi/extlib/ALUGrid-1.23/lib/libalugrid.a -lmetis /Users/fallahi/svnwork/dune-trunk/dune-common/lib/.libs/libdunecommon.a /Users/fallahi/extlib/openmpi-1.4.1/lib/libmpi.dylib /Users/fallahi/extlib/openmpi-1.4.1/lib/libopen-rte.dylib /Users/fallahi/extlib/openmpi-1.4.1/lib/libopen-pal.dylib -lutil -lm
>>>>> mpicxx -DHAVE_CONFIG_H -I. -I/Users/fallahi/svnwork/dune-trunk/dune-common -I/Users/fallahi/svnwork/dune-trunk/dune-grid -I/Users/fallahi/svnwork/dune-trunk/dune-istl -I. -DMPICH_IGNORE_CXX_SEEK -O2 -I/Users/fallahi/extlib/boost-trunk/include -D_REENTRANT -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H -DENABLE_MPI=1 -DMPICH_IGNORE_CXX_SEEK -O2 -I/Users/fallahi/extlib/boost-trunk/include -I/Users/fallahi/svnwork/dune-trunk/dune-common -I/Users/fallahi/svnwork/dune-trunk/dune-grid -I/Users/fallahi/svnwork/dune-trunk/dune-istl -D_REENTRANT -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H -DENABLE_MPI=1 -I/Users/fallahi/svnwork/dune-trunk/dune-common -DGRIDDIM=2 -DWORLDDIM=2 -DYASPGRID -D_REENTRANT -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H -DENABLE_MPI=1 -I/Users/fallahi/extlib/ALUGrid-1.23/include -I/Users/fallahi/extlib/ALUGrid-1.23/include/serial -I/Users/fallahi/extlib/ALUGrid-1.23/include/duneinterface -DENABLE_ALUGRID -I/Users/fallahi/extlib/ALUGrid-1.23/include/parallel -I/Users/fallahi/svnwork/dune-trunk/dune-grid -I/Users/fallahi/svnwork/dune-trunk/dune-istl -DMPICH_IGNORE_CXX_SEEK -O2 -MT integration-integration.o -MD -MP -MF .deps/integration-integration.Tpo -c -o integration-integration.o `test -f 'integration.cc' || echo './'`integration.cc
>>>>> /Users/fallahi/svnwork/dune-trunk/dune-grid/dune/grid/io/file/dgfparser/dgfyasp.hh: In member function ‘int Dune::DGFGridFactory<Dune::YaspGrid<dim> >::boundaryId(const Intersection&) const [with Intersection = Dune::Intersection<const Dune::YaspGrid<2>, Dune::YaspIntersection>, int dim = 2]’:
>>>>> /Users/fallahi/svnwork/dune-trunk/dune-grid/dune/grid/io/file/dgfparser/dgfparser.hh:540: instantiated from ‘void Dune::GridPtr<GridType>::initialize(Dune::DGFGridFactory<GridType>&) [with GridType = Dune::YaspGrid<2>]’
>>>>> /Users/fallahi/svnwork/dune-trunk/dune-grid/dune/grid/io/file/dgfparser/dgfparser.hh:355: instantiated from ‘Dune::GridPtr<GridType>::GridPtr(const std::string&, ompi_communicator_t*) [with GridType = Dune::YaspGrid<2>]’
>>>>> integration.cc:73: instantiated from here
>>>>> /Users/fallahi/svnwork/dune-trunk/dune-grid/dune/grid/io/file/dgfparser/dgfyasp.hh:104: warning: ‘boundaryId’ is deprecated (declared at /Users/fallahi/svnwork/dune-trunk/dune-grid/dune/grid/common/intersection.hh:231)
>>>>> mv -f .deps/integration-integration.Tpo .deps/integration-integration.Po
>>>>> /bin/sh ./libtool --tag=CXX --mode=link mpicxx -D_REENTRANT -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H -DENABLE_MPI=1 -DMPICH_IGNORE_CXX_SEEK -O2 -I/Users/fallahi/extlib/boost-trunk/include -I/Users/fallahi/svnwork/dune-trunk/dune-common -I/Users/fallahi/svnwork/dune-trunk/dune-grid -I/Users/fallahi/svnwork/dune-trunk/dune-istl -D_REENTRANT -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H -DENABLE_MPI=1 -I/Users/fallahi/svnwork/dune-trunk/dune-common -DGRIDDIM=2 -DWORLDDIM=2 -DYASPGRID -D_REENTRANT -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H -DENABLE_MPI=1 -I/Users/fallahi/extlib/ALUGrid-1.23/include -I/Users/fallahi/extlib/ALUGrid-1.23/include/serial -I/Users/fallahi/extlib/ALUGrid-1.23/include/duneinterface -DENABLE_ALUGRID -I/Users/fallahi/extlib/ALUGrid-1.23/include/parallel -I/Users/fallahi/svnwork/dune-trunk/dune-grid -I/Users/fallahi/svnwork/dune-trunk/dune-istl -DMPICH_IGNORE_CXX_SEEK -O2 -L/Users/fallahi/extlib/boost-trunk/ -o integration integration-integration.o -L/Users/fallahi/svnwork/dune-trunk/dune-grid/lib -ldunegrid -L/Users/fallahi/svnwork/dune-trunk/dune-common/lib -ldunecommon -L/Users/fallahi/extlib/boost-trunk/ -L/Users/fallahi/svnwork/dune-trunk/dune-grid/lib -ldunegrid -L/Users/fallahi/extlib/ALUGrid-1.23/lib -lalugrid -L/Users/fallahi/extlib/openmpi-1.4.1/lib -lmpi -lopen-rte -lopen-pal -lutil -L/Users/fallahi/svnwork/dune-trunk/dune-common/lib -ldunecommon -L/Users/fallahi/extlib/openmpi-1.4.1/lib -lmpi -lopen-rte -lopen-pal -lutil -L/Users/fallahi/svnwork/dune-trunk/dune-grid/lib -ldunegrid -L/Users/fallahi/svnwork/dune-trunk/dune-common/lib -ldunecommon -L/Users/fallahi/svnwork/dune-trunk/dune-common/lib -ldunecommon -L/Users/fallahi/svnwork/dune-trunk/dune-grid/lib -ldunegrid -L/Users/fallahi/svnwork/dune-trunk/dune-common/lib -ldunecommon -lm -L/Users/fallahi/extlib/openmpi-1.4.1/lib -lmpi -lopen-rte -lopen-pal -lutil -lm
>>>>> libtool: link: warning: library `/Users/fallahi/extlib/ALUGrid-1.23/lib/libalugrid.la' was moved.
>>>>> libtool: link: warning: library `/Users/fallahi/extlib/ALUGrid-1.23/lib/libalugrid.la' was moved.
>>>>> libtool: link: mpicxx -D_REENTRANT -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H -DENABLE_MPI=1 -DMPICH_IGNORE_CXX_SEEK -O2 -I/Users/fallahi/extlib/boost-trunk/include -I/Users/fallahi/svnwork/dune-trunk/dune-common -I/Users/fallahi/svnwork/dune-trunk/dune-grid -I/Users/fallahi/svnwork/dune-trunk/dune-istl -D_REENTRANT -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H -DENABLE_MPI=1 -I/Users/fallahi/svnwork/dune-trunk/dune-common -DGRIDDIM=2 -DWORLDDIM=2 -DYASPGRID -D_REENTRANT -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H -DENABLE_MPI=1 -I/Users/fallahi/extlib/ALUGrid-1.23/include -I/Users/fallahi/extlib/ALUGrid-1.23/include/serial -I/Users/fallahi/extlib/ALUGrid-1.23/include/duneinterface -DENABLE_ALUGRID -I/Users/fallahi/extlib/ALUGrid-1.23/include/parallel -I/Users/fallahi/svnwork/dune-trunk/dune-grid -I/Users/fallahi/svnwork/dune-trunk/dune-istl -DMPICH_IGNORE_CXX_SEEK -O2 -o integration integration-integration.o -Wl,-bind_at_load -L/Users/fallahi/extlib/boost-trunk/ -L/Users/fallahi/svnwork/dune-trunk/dune-grid/lib -L/Users/fallahi/svnwork/dune-trunk/dune-common/lib -L/Users/fallahi/extlib/ALUGrid-1.23/lib -L/Users/fallahi/extlib/metis-4.0 -L/Users/fallahi/extlib/openmpi-1.4.1/lib /Users/fallahi/svnwork/dune-trunk/dune-grid/lib/.libs/libdunegrid.a /Users/fallahi/extlib/ALUGrid-1.23/lib/libalugrid.a -lmetis /Users/fallahi/svnwork/dune-trunk/dune-common/lib/.libs/libdunecommon.a /Users/fallahi/extlib/openmpi-1.4.1/lib/libmpi.dylib /Users/fallahi/extlib/openmpi-1.4.1/lib/libopen-rte.dylib /Users/fallahi/extlib/openmpi-1.4.1/lib/libopen-pal.dylib -lutil -lm
>>>>> mpicxx -DHAVE_CONFIG_H -I. -I/Users/fallahi/svnwork/dune-trunk/dune-common -I/Users/fallahi/svnwork/dune-trunk/dune-grid -I/Users/fallahi/svnwork/dune-trunk/dune-istl -I. -DMPICH_IGNORE_CXX_SEEK -O2 -I/Users/fallahi/extlib/boost-trunk/include -D_REENTRANT -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H -DENABLE_MPI=1 -DMPICH_IGNORE_CXX_SEEK -O2 -I/Users/fallahi/extlib/boost-trunk/include -I/Users/fallahi/svnwork/dune-trunk/dune-common -I/Users/fallahi/svnwork/dune-trunk/dune-grid -I/Users/fallahi/svnwork/dune-trunk/dune-istl -D_REENTRANT -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H -DENABLE_MPI=1 -I/Users/fallahi/svnwork/dune-trunk/dune-common -DGRIDDIM=2 -DWORLDDIM=2 -DYASPGRID -D_REENTRANT -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H -DENABLE_MPI=1 -I/Users/fallahi/extlib/ALUGrid-1.23/include -I/Users/fallahi/extlib/ALUGrid-1.23/include/serial -I/Users/fallahi/extlib/ALUGrid-1.23/include/duneinterface -DENABLE_ALUGRID -I/Users/fallahi/extlib/ALUGrid-1.23/include/parallel -I/Users/fallahi/svnwork/dune-trunk/dune-grid -I/Users/fallahi/svnwork/dune-trunk/dune-istl -DMPICH_IGNORE_CXX_SEEK -O2 -MT othergrids-othergrids.o -MD -MP -MF .deps/othergrids-othergrids.Tpo -c -o othergrids-othergrids.o `test -f 'othergrids.cc' || echo './'`othergrids.cc
>>>>> In file included from /Users/fallahi/svnwork/dune-trunk/dune-grid/dune/grid/alugrid/persistentcontainer.hh:5,
>>>>> from /Users/fallahi/svnwork/dune-trunk/dune-grid/dune/grid/alugrid.hh:14,
>>>>> from unitcube_alugrid.hh:7,
>>>>> from unitcube.hh:53,
>>>>> from othergrids.cc:4:
>>>>> /Users/fallahi/svnwork/dune-trunk/dune-grid/dune/grid/utility/persistentcontainer.hh:5:25: error: unordered_map: No such file or directory
>>>>> In file included from /Users/fallahi/svnwork/dune-trunk/dune-grid/dune/grid/onedgrid.hh:22,
>>>>> from othergrids.cc:7:
>>>>> /Users/fallahi/svnwork/dune-trunk/dune-grid/dune/grid/onedgrid/onedgridentity.hh: In member function ‘typename GridImp::Codim<codim>::EntityPointer Dune::OneDGridEntity<0, dim, GridImp>::subEntity(int) const’:
>>>>> /Users/fallahi/svnwork/dune-trunk/dune-grid/dune/grid/onedgrid/onedgridentity.hh:332: warning: ‘topologyId’ is deprecated (declared at /Users/fallahi/svnwork/dune-trunk/dune-grid/dune/grid/genericgeometry/conversion.hh:684)
>>>>> make[2]: *** [othergrids-othergrids.o] Error 1
>>>>> make[1]: *** [all-recursive] Error 1
>>>>> make: *** [all] Error 2
>>>>> --- Failed to build dune-grid-howto ---
>>>>> Terminating dunecontrol due to previous errors!
>>>>>
>>>>>
>>>>> On Dec 1, 2010, at 3:04 PM, Oliver Sander wrote:
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>> Please update dune-common and try again.
>>>>>> --
>>>>>> Oliver
>>>>>>
>>>>>> Am 01.12.2010 14:26, schrieb arya fallahi:
>>>>>>
>>>>>>
>>>>>>
>>>>>>> Dear Dune,
>>>>>>>
>>>>>>> I just updated my dune copy and I faced with problems in compilations. Would you please have a look?
>>>>>>>
>>>>>>> Thanks,
>>>>>>> Arya
>>>>>>>
>>>>>>> pcp034701:dune-trunk fallahi$ uname -a
>>>>>>> Darwin pcp034701.psi.ch 10.5.0 Darwin Kernel Version 10.5.0: Fri Nov 5 23:20:39 PDT 2010; root:xnu-1504.9.17~1/RELEASE_I386 i386
>>>>>>>
>>>>>>>
>>>>>>> pcp034701:dune-trunk fallahi$ mpicxx --version
>>>>>>> i686-apple-darwin10-g++-4.2.1 (GCC) 4.2.1 (Apple Inc. build 5659)
>>>>>>> Copyright (C) 2007 Free Software Foundation, Inc.
>>>>>>> This is free software; see the source for copying conditions. There is NO
>>>>>>> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
>>>>>>>
>>>>>>> pcp034701:dune-trunk fallahi$ ./dune-common/bin/dunecontrol update all
>>>>>>> --- going to build dune-common dune-grid dune-istl dune-grid-howto hades ---
>>>>>>> --- calling update for dune-common ---
>>>>>>> At revision 6282.
>>>>>>> --- dune-common done ---
>>>>>>> --- calling update for dune-grid ---
>>>>>>> At revision 7198.
>>>>>>> --- dune-grid done ---
>>>>>>> --- calling update for dune-istl ---
>>>>>>> At revision 1413.
>>>>>>> --- dune-istl done ---
>>>>>>> --- calling update for dune-grid-howto ---
>>>>>>> At revision 338.
>>>>>>> --- dune-grid-howto done ---
>>>>>>> --- calling update for hades ---
>>>>>>> At revision 2233.
>>>>>>> --- hades done ---
>>>>>>> --- done ---
>>>>>>>
>>>>>>>
>>>>>>> Found the following Dune-components:
>>>>>>>
>>>>>>> ----------------------------------------
>>>>>>>
>>>>>>> dune-common.............: version 2.1-svn
>>>>>>> ALBERTA.................: no
>>>>>>> ALUGrid.................: version 1.23
>>>>>>> AlgLib for DUNE.........: no
>>>>>>> AmiraMesh...............: no
>>>>>>> GMP.....................: no
>>>>>>> Grape...................: no
>>>>>>> MPI.....................: yes (OpenMPI)
>>>>>>> OpenGL..................: no
>>>>>>> UG......................: no
>>>>>>> psurface................: no
>>>>>>>
>>>>>>> ----------------------------------------
>>>>>>>
>>>>>>> See ./configure --help and config.log for reasons why a component wasn't found
>>>>>>>
>>>>>>> configure: creating ./config.status
>>>>>>> config.status: creating Makefile
>>>>>>> config.status: creating lib/Makefile
>>>>>>> config.status: creating doc/appl/refelements/Makefile
>>>>>>> config.status: creating doc/appl/Makefile
>>>>>>> config.status: creating doc/refinement/Makefile
>>>>>>> config.status: creating doc/doxygen/Makefile
>>>>>>> config.status: creating doc/doxygen/Doxyfile
>>>>>>> config.status: creating doc/grids/Makefile
>>>>>>> config.status: creating doc/grids/amc/Makefile
>>>>>>> config.status: creating doc/grids/amiramesh/Makefile
>>>>>>> config.status: creating doc/grids/dgf/Makefile
>>>>>>> config.status: creating doc/grids/gridfactory/Makefile
>>>>>>> config.status: creating doc/grids/gmsh/Makefile
>>>>>>> config.status: creating doc/grids/starcd/Makefile
>>>>>>> config.status: creating doc/Makefile
>>>>>>> config.status: creating dune/Makefile
>>>>>>> config.status: creating dune/grid/Makefile
>>>>>>> config.status: creating dune/grid/test/Makefile
>>>>>>> config.status: creating dune/grid/common/test/Makefile
>>>>>>> config.status: creating dune/grid/common/quadraturerules/Makefile
>>>>>>> config.status: creating dune/grid/common/refinement/Makefile
>>>>>>> config.status: creating dune/grid/common/Makefile
>>>>>>> config.status: creating dune/grid/uggrid/Makefile
>>>>>>> config.status: creating dune/grid/sgrid/Makefile
>>>>>>> config.status: creating dune/grid/albertagrid/Makefile
>>>>>>> config.status: creating dune/grid/albertagrid/test/Makefile
>>>>>>> config.status: creating dune/grid/yaspgrid/Makefile
>>>>>>> config.status: creating dune/grid/onedgrid/Makefile
>>>>>>> config.status: creating dune/grid/utility/Makefile
>>>>>>> config.status: creating dune/grid/utility/test/Makefile
>>>>>>> config.status: creating dune/grid/alugrid/common/Makefile
>>>>>>> config.status: creating dune/grid/alugrid/2d/Makefile
>>>>>>> config.status: creating dune/grid/alugrid/3d/Makefile
>>>>>>> config.status: creating dune/grid/alugrid/Makefile
>>>>>>> config.status: creating dune/grid/io/file/test/Makefile
>>>>>>> config.status: creating dune/grid/io/file/amiramesh/Makefile
>>>>>>> config.status: creating dune/grid/io/file/dgfparser/Makefile
>>>>>>> config.status: creating dune/grid/io/file/dgfparser/test/Makefile
>>>>>>> config.status: creating dune/grid/io/file/dgfparser/utils/Makefile
>>>>>>> config.status: creating dune/grid/io/file/gnuplot/Makefile
>>>>>>> config.status: creating dune/grid/io/file/vtk/Makefile
>>>>>>> config.status: creating dune/grid/io/file/Makefile
>>>>>>> config.status: creating dune/grid/io/visual/grape/Makefile
>>>>>>> config.status: creating dune/grid/io/visual/Makefile
>>>>>>> config.status: creating dune/grid/io/Makefile
>>>>>>> config.status: creating dune/grid/genericgeometry/Makefile
>>>>>>> config.status: creating dune/grid/genericgeometry/test/Makefile
>>>>>>> config.status: creating dune/grid/geometrygrid/Makefile
>>>>>>> config.status: creating m4/Makefile
>>>>>>> config.status: creating dune-grid.pc
>>>>>>> config.status: creating config.h
>>>>>>> config.status: config.h is unchanged
>>>>>>> config.status: executing depfiles commands
>>>>>>> config.status: executing libtool commands
>>>>>>> --- calling make for dune-grid ---
>>>>>>> make
>>>>>>> cd .&& /bin/sh /Users/fallahi/svnwork/dune-trunk/dune-grid/missing --run autoheader
>>>>>>> configure.ac:10: warning: PKG_PROG_PKG_CONFIG is m4_require'd but not m4_defun'd
>>>>>>> aclocal.m4:11357: DUNE_CHECK_ALL is expanded from...
>>>>>>> configure.ac:10: the top level
>>>>>>> aclocal.m4:11592: DUNE_COMMON_CHECKS is expanded from...
>>>>>>> dependencies.m4:26: DUNE_CHECK_MOD_DEPENDENCIES is expanded from...
>>>>>>> aclocal.m4:11260: DUNE_CHECK_MODULES is expanded from...
>>>>>>> aclocal.m4:11601: DUNE_COMMON_CHECK_MODULE is expanded from...
>>>>>>> rm -f stamp-h1
>>>>>>> touch config.h.in
>>>>>>> cd .&& /bin/sh ./config.status config.h
>>>>>>> config.status: creating config.h
>>>>>>> config.status: config.h is unchanged
>>>>>>> make all-recursive
>>>>>>> Making all in dune
>>>>>>> Making all in grid
>>>>>>> Making all in genericgeometry
>>>>>>> Making all in test
>>>>>>> make[5]: Nothing to be done for `all'.
>>>>>>> make[5]: Nothing to be done for `all-am'.
>>>>>>> Making all in common
>>>>>>> Making all in refinement
>>>>>>> make[5]: Nothing to be done for `all'.
>>>>>>> Making all in test
>>>>>>> make[5]: Nothing to be done for `all'.
>>>>>>> Making all in quadraturerules
>>>>>>> /bin/sh ../../../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../../../.. -I/Users/fallahi/svnwork/dune-trunk/dune-common -I../../../.. -DMPICH_IGNORE_CXX_SEEK -O2 -DMPICH_IGNORE_CXX_SEEK -O2 -MT quadraturerules.lo -MD -MP -MF .deps/quadraturerules.Tpo -c -o quadraturerules.lo quadraturerules.cc
>>>>>>> libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../../../.. -I/Users/fallahi/svnwork/dune-trunk/dune-common -I../../../.. -DMPICH_IGNORE_CXX_SEEK -O2 -DMPICH_IGNORE_CXX_SEEK -O2 -MT quadraturerules.lo -MD -MP -MF .deps/quadraturerules.Tpo -c quadraturerules.cc -o quadraturerules.o
>>>>>>> In file included from ../quadraturerules.hh:15,
>>>>>>> from quadraturerules.cc:3:
>>>>>>> /Users/fallahi/svnwork/dune-trunk/dune-common/dune/common/geometrytype.hh:153:27: error: invalid suffix "b0011" on integer constant
>>>>>>> /Users/fallahi/svnwork/dune-trunk/dune-common/dune/common/geometrytype.hh:160:27: error: invalid suffix "b0101" on integer constant
>>>>>>> /Users/fallahi/svnwork/dune-trunk/dune-common/dune/common/geometrytype.hh:206:63: error: invalid suffix "b0001" on integer constant
>>>>>>> /Users/fallahi/svnwork/dune-trunk/dune-common/dune/common/geometrytype.hh:211:63: error: invalid suffix "b0011" on integer constant
>>>>>>> /Users/fallahi/svnwork/dune-trunk/dune-common/dune/common/geometrytype.hh:216:63: error: invalid suffix "b0001" on integer constant
>>>>>>> /Users/fallahi/svnwork/dune-trunk/dune-common/dune/common/geometrytype.hh:221:63: error: invalid suffix "b0011" on integer constant
>>>>>>> /Users/fallahi/svnwork/dune-trunk/dune-common/dune/common/geometrytype.hh:226:63: error: invalid suffix "b0101" on integer constant
>>>>>>> /Users/fallahi/svnwork/dune-trunk/dune-common/dune/common/geometrytype.hh:231:63: error: invalid suffix "b0111" on integer constant
>>>>>>> make[5]: *** [quadraturerules.lo] Error 1
>>>>>>> make[4]: *** [all-recursive] Error 1
>>>>>>> make[3]: *** [all-recursive] Error 1
>>>>>>> make[2]: *** [all-recursive] Error 1
>>>>>>> make[1]: *** [all-recursive] Error 1
>>>>>>> make: *** [all] Error 2
>>>>>>> --- Failed to build dune-grid ---
>>>>>>> Terminating dunecontrol due to previous errors!
>>>>>>>
>>>>>>> real 0m56.449s
>>>>>>> user 0m37.592s
>>>>>>> sys 0m18.254s
>>>>>>>
>>>>>>>
>>>>>>> _______________________________________________
>>>>>>> Dune mailing list
>>>>>>> Dune at dune-project.org
>>>>>>> http://lists.dune-project.org/mailman/listinfo/dune
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>> --
>>>>>> ************************************************************************
>>>>>> * Oliver Sander ** email: sander at mi.fu-berlin.de *
>>>>>> * Freie Universität Berlin ** phone: + 49 (30) 838 75348 *
>>>>>> * Institut für Mathematik ** URL : page.mi.fu-berlin.de/~sander *
>>>>>> * Arnimallee 6 ** -------------------------------------*
>>>>>> * 14195 Berlin, Germany ** Member of MATHEON (www.matheon.de) *
>>>>>> ************************************************************************
>>>>>>
>>>>>>
>>>>>> _______________________________________________
>>>>>> Dune mailing list
>>>>>> Dune at dune-project.org
>>>>>> http://lists.dune-project.org/mailman/listinfo/dune
>>>>>>
>>>>>>
>>>>>>
>>>>> Arya Fallahi,
>>>>> Dr. sc. techn., dipl. El. Ing. ETH,
>>>>> Computational Accelerator Scientist
>>>>> Paul Scherrer Institute (PSI),
>>>>> CH-5232 Villigen, Switzerland,
>>>>> arya.fallahi at psi.ch,
>>>>> +41(0)56 310 50 17
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>> --
>>>> ************************************************************************
>>>> * Oliver Sander ** email: sander at mi.fu-berlin.de *
>>>> * Freie Universität Berlin ** phone: + 49 (30) 838 75348 *
>>>> * Institut für Mathematik ** URL : page.mi.fu-berlin.de/~sander *
>>>> * Arnimallee 6 ** -------------------------------------*
>>>> * 14195 Berlin, Germany ** Member of MATHEON (www.matheon.de) *
>>>> ************************************************************************
>>>>
>>>>
>>>>
>>>>
>>> Arya Fallahi,
>>> Dr. sc. techn., dipl. El. Ing. ETH,
>>> Computational Accelerator Scientist
>>> Paul Scherrer Institute (PSI),
>>> CH-5232 Villigen, Switzerland,
>>> arya.fallahi at psi.ch,
>>> +41(0)56 310 50 17
>>>
>>>
>>>
>>>
>>
>> --
>> ************************************************************************
>> * Oliver Sander ** email: sander at mi.fu-berlin.de *
>> * Freie Universität Berlin ** phone: + 49 (30) 838 75348 *
>> * Institut für Mathematik ** URL : page.mi.fu-berlin.de/~sander *
>> * Arnimallee 6 ** -------------------------------------*
>> * 14195 Berlin, Germany ** Member of MATHEON (www.matheon.de) *
>> ************************************************************************
>>
>>
>>
> Arya Fallahi,
> Dr. sc. techn., dipl. El. Ing. ETH,
> Computational Accelerator Scientist
> Paul Scherrer Institute (PSI),
> CH-5232 Villigen, Switzerland,
> arya.fallahi at psi.ch,
> +41(0)56 310 50 17
>
>
>
--
************************************************************************
* Oliver Sander ** email: sander at mi.fu-berlin.de *
* Freie Universität Berlin ** phone: + 49 (30) 838 75348 *
* Institut für Mathematik ** URL : page.mi.fu-berlin.de/~sander *
* Arnimallee 6 ** -------------------------------------*
* 14195 Berlin, Germany ** Member of MATHEON (www.matheon.de) *
************************************************************************
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