[Dune] Dune breaks in dune-grid
Andreas Dedner
dedner at mathematik.uni-freiburg.de
Wed Dec 1 16:12:31 CET 2010
Please update dune-grid and try again.
Best
Andreas
On 01/12/10 14:25, Oliver Sander wrote:
> That's something else.
> Best,
> Oliver
>
> Am 01.12.2010 15:20, schrieb arya fallahi:
>> Thanks Oliver,
>>
>> Now it breaks in Dune-grid-howto.
>>
>> In the following, you see the retrieved message.
>>
>> Best
>> Arya
>>
>> Found the following Dune-components:
>>
>> ----------------------------------------
>>
>> dune-common.............: version 2.1-svn
>> dune-grid...............: version 2.1-svn
>> dune-istl...............: version 2.1-svn
>> ALBERTA.................: no
>> ALUGrid.................: version 1.23
>> AlgLib for DUNE.........: no
>> AmiraMesh...............: no
>> BLAS....................: no
>> GMP.....................: no
>> Grape...................: no
>> METIS...................: yes
>> MPI.....................: yes (OpenMPI)
>> OpenGL..................: no
>> ParMETIS................: no
>> SuperLU-DIST............: no
>> SuperLU.................: no
>> UG......................: no
>> psurface................: no
>>
>> ----------------------------------------
>>
>> See ./configure --help and config.log for reasons why a component
>> wasn't found
>>
>> --- calling make for dune-grid-howto ---
>> make
>> cd .&& /bin/sh
>> /Users/fallahi/svnwork/dune-trunk/dune-grid-howto/missing --run
>> autoheader
>> configure.ac:45: warning: PKG_PROG_PKG_CONFIG is m4_require'd but not
>> m4_defun'd
>> aclocal.m4:11664: DUNE_CHECK_ALL is expanded from...
>> configure.ac:45: the top level
>> aclocal.m4:11871: DUNE_COMMON_CHECKS is expanded from...
>> dependencies.m4:40: DUNE_CHECK_MOD_DEPENDENCIES is expanded from...
>> aclocal.m4:11567: DUNE_CHECK_MODULES is expanded from...
>> aclocal.m4:11880: DUNE_COMMON_CHECK_MODULE is expanded from...
>> aclocal.m4:9551: DUNE_GRID_CHECK_MODULE is expanded from...
>> aclocal.m4:8812: DUNE_ISTL_CHECK_MODULE is expanded from...
>> rm -f stamp-h1
>> touch config.h.in
>> make all-recursive
>> Making all in doc
>> make[2]: Nothing to be done for `all'.
>> Making all in grids
>> make[2]: Nothing to be done for `all'.
>> cd .&& /bin/sh ./config.status config.h
>> config.status: creating config.h
>> config.status: config.h is unchanged
>> mpicxx -DHAVE_CONFIG_H -I.
>> -I/Users/fallahi/svnwork/dune-trunk/dune-common
>> -I/Users/fallahi/svnwork/dune-trunk/dune-grid
>> -I/Users/fallahi/svnwork/dune-trunk/dune-istl -I.
>> -DMPICH_IGNORE_CXX_SEEK -O2
>> -I/Users/fallahi/extlib/boost-trunk/include -D_REENTRANT
>> -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H
>> -DENABLE_MPI=1 -DMPICH_IGNORE_CXX_SEEK -O2
>> -I/Users/fallahi/extlib/boost-trunk/include
>> -I/Users/fallahi/svnwork/dune-trunk/dune-common
>> -I/Users/fallahi/svnwork/dune-trunk/dune-grid
>> -I/Users/fallahi/svnwork/dune-trunk/dune-istl -D_REENTRANT
>> -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H
>> -DENABLE_MPI=1 -I/Users/fallahi/svnwork/dune-trunk/dune-common
>> -DGRIDDIM=2 -DWORLDDIM=2 -DYASPGRID -D_REENTRANT
>> -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H
>> -DENABLE_MPI=1 -I/Users/fallahi/extlib/ALUGrid-1.23/include
>> -I/Users/fallahi/extlib/ALUGrid-1.23/include/serial
>> -I/Users/fallahi/extlib/ALUGrid-1.23/include/duneinterface
>> -DENABLE_ALUGRID
>> -I/Users/fallahi/extlib/ALUGrid-1.23/include/parallel
>> -I/Users/fallahi/svnwork/dune-trunk/dune-grid
>> -I/Users/fallahi/svnwork/dune-trunk/dune-istl -DMPICH_IGNORE_CXX_SEEK
>> -O2 -MT gettingstarted-gettingstarted.o -MD -MP -MF
>> .deps/gettingstarted-gettingstarted.Tpo -c -o
>> gettingstarted-gettingstarted.o `test -f 'gettingstarted.cc' || echo
>> './'`gettingstarted.cc
>> mv -f .deps/gettingstarted-gettingstarted.Tpo
>> .deps/gettingstarted-gettingstarted.Po
>> /bin/sh ./libtool --tag=CXX --mode=link mpicxx -D_REENTRANT
>> -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H
>> -DENABLE_MPI=1 -DMPICH_IGNORE_CXX_SEEK -O2
>> -I/Users/fallahi/extlib/boost-trunk/include
>> -I/Users/fallahi/svnwork/dune-trunk/dune-common
>> -I/Users/fallahi/svnwork/dune-trunk/dune-grid
>> -I/Users/fallahi/svnwork/dune-trunk/dune-istl -D_REENTRANT
>> -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H
>> -DENABLE_MPI=1 -I/Users/fallahi/svnwork/dune-trunk/dune-common
>> -DGRIDDIM=2 -DWORLDDIM=2 -DYASPGRID -D_REENTRANT
>> -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H
>> -DENABLE_MPI=1 -I/Users/fallahi/extlib/ALUGrid-1.23/include
>> -I/Users/fallahi/extlib/ALUGrid-1.23/include/serial
>> -I/Users/fallahi/extlib/ALUGrid-1.23/include/duneinterface
>> -DENABLE_ALUGRID
>> -I/Users/fallahi/extlib/ALUGrid-1.23/include/parallel
>> -I/Users/fallahi/svnwork/dune-trunk/dune-grid
>> -I/Users/fallahi/svnwork/dune-trunk/dune-istl -DMPICH_IGNORE_CXX_SEEK
>> -O2 -L/Users/fallahi/extlib/boost-trunk/ -o gettingstarted
>> gettingstarted-gettingstarted.o
>> -L/Users/fallahi/svnwork/dune-trunk/dune-grid/lib -ldunegrid
>> -L/Users/fallahi/svnwork/dune-trunk/dune-common/lib -ldunecommon
>> -L/Users/fallahi/extlib/boost-trunk/
>> -L/Users/fallahi/svnwork/dune-trunk/dune-grid/lib -ldunegrid
>> -L/Users/fallahi/extlib/ALUGrid-1.23/lib -lalugrid
>> -L/Users/fallahi/extlib/openmpi-1.4.1/lib -lmpi -lopen-rte -lopen-pal
>> -lutil -L/Users/fallahi/svnwork/dune-trunk/dune-common/lib
>> -ldunecommon -L/Users/fallahi/extlib/openmpi-1.4.1/lib -lmpi
>> -lopen-rte -lopen-pal -lutil
>> -L/Users/fallahi/svnwork/dune-trunk/dune-grid/lib -ldunegrid
>> -L/Users/fallahi/svnwork/dune-trunk/dune-common/lib -ldunecommon
>> -L/Users/fallahi/svnwork/dune-trunk/dune-common/lib -ldunecommon
>> -L/Users/fallahi/svnwork/dune-trunk/dune-grid/lib -ldunegrid
>> -L/Users/fallahi/svnwork/dune-trunk/dune-common/lib -ldunecommon
>> -lm -L/Users/fallahi/extlib/openmpi-1.4.1/lib -lmpi -lopen-rte
>> -lopen-pal -lutil -lm
>> libtool: link: warning: library
>> `/Users/fallahi/extlib/ALUGrid-1.23/lib/libalugrid.la' was moved.
>> libtool: link: warning: library
>> `/Users/fallahi/extlib/ALUGrid-1.23/lib/libalugrid.la' was moved.
>> libtool: link: mpicxx -D_REENTRANT
>> -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H
>> -DENABLE_MPI=1 -DMPICH_IGNORE_CXX_SEEK -O2
>> -I/Users/fallahi/extlib/boost-trunk/include
>> -I/Users/fallahi/svnwork/dune-trunk/dune-common
>> -I/Users/fallahi/svnwork/dune-trunk/dune-grid
>> -I/Users/fallahi/svnwork/dune-trunk/dune-istl -D_REENTRANT
>> -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H
>> -DENABLE_MPI=1 -I/Users/fallahi/svnwork/dune-trunk/dune-common
>> -DGRIDDIM=2 -DWORLDDIM=2 -DYASPGRID -D_REENTRANT
>> -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H
>> -DENABLE_MPI=1 -I/Users/fallahi/extlib/ALUGrid-1.23/include
>> -I/Users/fallahi/extlib/ALUGrid-1.23/include/serial
>> -I/Users/fallahi/extlib/ALUGrid-1.23/include/duneinterface
>> -DENABLE_ALUGRID
>> -I/Users/fallahi/extlib/ALUGrid-1.23/include/parallel
>> -I/Users/fallahi/svnwork/dune-trunk/dune-grid
>> -I/Users/fallahi/svnwork/dune-trunk/dune-istl -DMPICH_IGNORE_CXX_SEEK
>> -O2 -o gettingstarted gettingstarted-gettingstarted.o
>> -Wl,-bind_at_load -L/Users/fallahi/extlib/boost-trunk/
>> -L/Users/fallahi/svnwork/dune-trunk/dune-grid/lib
>> -L/Users/fallahi/svnwork/dune-trunk/dune-common/lib
>> -L/Users/fallahi/extlib/ALUGrid-1.23/lib
>> -L/Users/fallahi/extlib/metis-4.0
>> -L/Users/fallahi/extlib/openmpi-1.4.1/lib
>> /Users/fallahi/svnwork/dune-trunk/dune-grid/lib/.libs/libdunegrid.a
>> /Users/fallahi/extlib/ALUGrid-1.23/lib/libalugrid.a -lmetis
>> /Users/fallahi/svnwork/dune-trunk/dune-common/lib/.libs/libdunecommon.a
>> /Users/fallahi/extlib/openmpi-1.4.1/lib/libmpi.dylib
>> /Users/fallahi/extlib/openmpi-1.4.1/lib/libopen-rte.dylib
>> /Users/fallahi/extlib/openmpi-1.4.1/lib/libopen-pal.dylib -lutil -lm
>> mpicxx -DHAVE_CONFIG_H -I.
>> -I/Users/fallahi/svnwork/dune-trunk/dune-common
>> -I/Users/fallahi/svnwork/dune-trunk/dune-grid
>> -I/Users/fallahi/svnwork/dune-trunk/dune-istl -I.
>> -DMPICH_IGNORE_CXX_SEEK -O2
>> -I/Users/fallahi/extlib/boost-trunk/include -D_REENTRANT
>> -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H
>> -DENABLE_MPI=1 -DMPICH_IGNORE_CXX_SEEK -O2
>> -I/Users/fallahi/extlib/boost-trunk/include
>> -I/Users/fallahi/svnwork/dune-trunk/dune-common
>> -I/Users/fallahi/svnwork/dune-trunk/dune-grid
>> -I/Users/fallahi/svnwork/dune-trunk/dune-istl -D_REENTRANT
>> -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H
>> -DENABLE_MPI=1 -I/Users/fallahi/svnwork/dune-trunk/dune-common
>> -DGRIDDIM=2 -DWORLDDIM=2 -DYASPGRID -D_REENTRANT
>> -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H
>> -DENABLE_MPI=1 -I/Users/fallahi/extlib/ALUGrid-1.23/include
>> -I/Users/fallahi/extlib/ALUGrid-1.23/include/serial
>> -I/Users/fallahi/extlib/ALUGrid-1.23/include/duneinterface
>> -DENABLE_ALUGRID
>> -I/Users/fallahi/extlib/ALUGrid-1.23/include/parallel
>> -I/Users/fallahi/svnwork/dune-trunk/dune-grid
>> -I/Users/fallahi/svnwork/dune-trunk/dune-istl -DMPICH_IGNORE_CXX_SEEK
>> -O2 -MT traversal-traversal.o -MD -MP -MF
>> .deps/traversal-traversal.Tpo -c -o traversal-traversal.o `test -f
>> 'traversal.cc' || echo './'`traversal.cc
>> mv -f .deps/traversal-traversal.Tpo .deps/traversal-traversal.Po
>> /bin/sh ./libtool --tag=CXX --mode=link mpicxx -D_REENTRANT
>> -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H
>> -DENABLE_MPI=1 -DMPICH_IGNORE_CXX_SEEK -O2
>> -I/Users/fallahi/extlib/boost-trunk/include
>> -I/Users/fallahi/svnwork/dune-trunk/dune-common
>> -I/Users/fallahi/svnwork/dune-trunk/dune-grid
>> -I/Users/fallahi/svnwork/dune-trunk/dune-istl -D_REENTRANT
>> -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H
>> -DENABLE_MPI=1 -I/Users/fallahi/svnwork/dune-trunk/dune-common
>> -DGRIDDIM=2 -DWORLDDIM=2 -DYASPGRID -D_REENTRANT
>> -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H
>> -DENABLE_MPI=1 -I/Users/fallahi/extlib/ALUGrid-1.23/include
>> -I/Users/fallahi/extlib/ALUGrid-1.23/include/serial
>> -I/Users/fallahi/extlib/ALUGrid-1.23/include/duneinterface
>> -DENABLE_ALUGRID
>> -I/Users/fallahi/extlib/ALUGrid-1.23/include/parallel
>> -I/Users/fallahi/svnwork/dune-trunk/dune-grid
>> -I/Users/fallahi/svnwork/dune-trunk/dune-istl -DMPICH_IGNORE_CXX_SEEK
>> -O2 -L/Users/fallahi/extlib/boost-trunk/ -o traversal
>> traversal-traversal.o
>> -L/Users/fallahi/svnwork/dune-trunk/dune-grid/lib -ldunegrid
>> -L/Users/fallahi/svnwork/dune-trunk/dune-common/lib -ldunecommon
>> -L/Users/fallahi/extlib/boost-trunk/
>> -L/Users/fallahi/svnwork/dune-trunk/dune-grid/lib -ldunegrid
>> -L/Users/fallahi/extlib/ALUGrid-1.23/lib -lalugrid
>> -L/Users/fallahi/extlib/openmpi-1.4.1/lib -lmpi -lopen-rte -lopen-pal
>> -lutil -L/Users/fallahi/svnwork/dune-trunk/dune-common/lib
>> -ldunecommon -L/Users/fallahi/extlib/openmpi-1.4.1/lib -lmpi
>> -lopen-rte -lopen-pal -lutil
>> -L/Users/fallahi/svnwork/dune-trunk/dune-grid/lib -ldunegrid
>> -L/Users/fallahi/svnwork/dune-trunk/dune-common/lib -ldunecommon
>> -L/Users/fallahi/svnwork/dune-trunk/dune-common/lib -ldunecommon
>> -L/Users/fallahi/svnwork/dune-trunk/dune-grid/lib -ldunegrid
>> -L/Users/fallahi/svnwork/dune-trunk/dune-common/lib -ldunecommon
>> -lm -L/Users/fallahi/extlib/openmpi-1.4.1/lib -lmpi -lopen-rte
>> -lopen-pal -lutil -lm
>> libtool: link: warning: library
>> `/Users/fallahi/extlib/ALUGrid-1.23/lib/libalugrid.la' was moved.
>> libtool: link: warning: library
>> `/Users/fallahi/extlib/ALUGrid-1.23/lib/libalugrid.la' was moved.
>> libtool: link: mpicxx -D_REENTRANT
>> -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H
>> -DENABLE_MPI=1 -DMPICH_IGNORE_CXX_SEEK -O2
>> -I/Users/fallahi/extlib/boost-trunk/include
>> -I/Users/fallahi/svnwork/dune-trunk/dune-common
>> -I/Users/fallahi/svnwork/dune-trunk/dune-grid
>> -I/Users/fallahi/svnwork/dune-trunk/dune-istl -D_REENTRANT
>> -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H
>> -DENABLE_MPI=1 -I/Users/fallahi/svnwork/dune-trunk/dune-common
>> -DGRIDDIM=2 -DWORLDDIM=2 -DYASPGRID -D_REENTRANT
>> -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H
>> -DENABLE_MPI=1 -I/Users/fallahi/extlib/ALUGrid-1.23/include
>> -I/Users/fallahi/extlib/ALUGrid-1.23/include/serial
>> -I/Users/fallahi/extlib/ALUGrid-1.23/include/duneinterface
>> -DENABLE_ALUGRID
>> -I/Users/fallahi/extlib/ALUGrid-1.23/include/parallel
>> -I/Users/fallahi/svnwork/dune-trunk/dune-grid
>> -I/Users/fallahi/svnwork/dune-trunk/dune-istl -DMPICH_IGNORE_CXX_SEEK
>> -O2 -o traversal traversal-traversal.o -Wl,-bind_at_load
>> -L/Users/fallahi/extlib/boost-trunk/
>> -L/Users/fallahi/svnwork/dune-trunk/dune-grid/lib
>> -L/Users/fallahi/svnwork/dune-trunk/dune-common/lib
>> -L/Users/fallahi/extlib/ALUGrid-1.23/lib
>> -L/Users/fallahi/extlib/metis-4.0
>> -L/Users/fallahi/extlib/openmpi-1.4.1/lib
>> /Users/fallahi/svnwork/dune-trunk/dune-grid/lib/.libs/libdunegrid.a
>> /Users/fallahi/extlib/ALUGrid-1.23/lib/libalugrid.a -lmetis
>> /Users/fallahi/svnwork/dune-trunk/dune-common/lib/.libs/libdunecommon.a
>> /Users/fallahi/extlib/openmpi-1.4.1/lib/libmpi.dylib
>> /Users/fallahi/extlib/openmpi-1.4.1/lib/libopen-rte.dylib
>> /Users/fallahi/extlib/openmpi-1.4.1/lib/libopen-pal.dylib -lutil -lm
>> mpicxx -DHAVE_CONFIG_H -I.
>> -I/Users/fallahi/svnwork/dune-trunk/dune-common
>> -I/Users/fallahi/svnwork/dune-trunk/dune-grid
>> -I/Users/fallahi/svnwork/dune-trunk/dune-istl -I.
>> -DMPICH_IGNORE_CXX_SEEK -O2
>> -I/Users/fallahi/extlib/boost-trunk/include -D_REENTRANT
>> -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H
>> -DENABLE_MPI=1 -DMPICH_IGNORE_CXX_SEEK -O2
>> -I/Users/fallahi/extlib/boost-trunk/include
>> -I/Users/fallahi/svnwork/dune-trunk/dune-common
>> -I/Users/fallahi/svnwork/dune-trunk/dune-grid
>> -I/Users/fallahi/svnwork/dune-trunk/dune-istl -D_REENTRANT
>> -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H
>> -DENABLE_MPI=1 -I/Users/fallahi/svnwork/dune-trunk/dune-common
>> -DGRIDDIM=2 -DWORLDDIM=2 -DYASPGRID -D_REENTRANT
>> -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H
>> -DENABLE_MPI=1 -I/Users/fallahi/extlib/ALUGrid-1.23/include
>> -I/Users/fallahi/extlib/ALUGrid-1.23/include/serial
>> -I/Users/fallahi/extlib/ALUGrid-1.23/include/duneinterface
>> -DENABLE_ALUGRID
>> -I/Users/fallahi/extlib/ALUGrid-1.23/include/parallel
>> -I/Users/fallahi/svnwork/dune-trunk/dune-grid
>> -I/Users/fallahi/svnwork/dune-trunk/dune-istl -DMPICH_IGNORE_CXX_SEEK
>> -O2 -MT integration-integration.o -MD -MP -MF
>> .deps/integration-integration.Tpo -c -o integration-integration.o
>> `test -f 'integration.cc' || echo './'`integration.cc
>> /Users/fallahi/svnwork/dune-trunk/dune-grid/dune/grid/io/file/dgfparser/dgfyasp.hh:
>> In member function ‘int Dune::DGFGridFactory<Dune::YaspGrid<dim>
>> >::boundaryId(const Intersection&) const [with Intersection =
>> Dune::Intersection<const Dune::YaspGrid<2>, Dune::YaspIntersection>,
>> int dim = 2]’:
>> /Users/fallahi/svnwork/dune-trunk/dune-grid/dune/grid/io/file/dgfparser/dgfparser.hh:540:
>> instantiated from ‘void
>> Dune::GridPtr<GridType>::initialize(Dune::DGFGridFactory<GridType>&)
>> [with GridType = Dune::YaspGrid<2>]’
>> /Users/fallahi/svnwork/dune-trunk/dune-grid/dune/grid/io/file/dgfparser/dgfparser.hh:355:
>> instantiated from ‘Dune::GridPtr<GridType>::GridPtr(const
>> std::string&, ompi_communicator_t*) [with GridType = Dune::YaspGrid<2>]’
>> integration.cc:73: instantiated from here
>> /Users/fallahi/svnwork/dune-trunk/dune-grid/dune/grid/io/file/dgfparser/dgfyasp.hh:104:
>> warning: ‘boundaryId’ is deprecated (declared at
>> /Users/fallahi/svnwork/dune-trunk/dune-grid/dune/grid/common/intersection.hh:231)
>>
>> mv -f .deps/integration-integration.Tpo .deps/integration-integration.Po
>> /bin/sh ./libtool --tag=CXX --mode=link mpicxx -D_REENTRANT
>> -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H
>> -DENABLE_MPI=1 -DMPICH_IGNORE_CXX_SEEK -O2
>> -I/Users/fallahi/extlib/boost-trunk/include
>> -I/Users/fallahi/svnwork/dune-trunk/dune-common
>> -I/Users/fallahi/svnwork/dune-trunk/dune-grid
>> -I/Users/fallahi/svnwork/dune-trunk/dune-istl -D_REENTRANT
>> -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H
>> -DENABLE_MPI=1 -I/Users/fallahi/svnwork/dune-trunk/dune-common
>> -DGRIDDIM=2 -DWORLDDIM=2 -DYASPGRID -D_REENTRANT
>> -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H
>> -DENABLE_MPI=1 -I/Users/fallahi/extlib/ALUGrid-1.23/include
>> -I/Users/fallahi/extlib/ALUGrid-1.23/include/serial
>> -I/Users/fallahi/extlib/ALUGrid-1.23/include/duneinterface
>> -DENABLE_ALUGRID
>> -I/Users/fallahi/extlib/ALUGrid-1.23/include/parallel
>> -I/Users/fallahi/svnwork/dune-trunk/dune-grid
>> -I/Users/fallahi/svnwork/dune-trunk/dune-istl -DMPICH_IGNORE_CXX_SEEK
>> -O2 -L/Users/fallahi/extlib/boost-trunk/ -o integration
>> integration-integration.o
>> -L/Users/fallahi/svnwork/dune-trunk/dune-grid/lib -ldunegrid
>> -L/Users/fallahi/svnwork/dune-trunk/dune-common/lib -ldunecommon
>> -L/Users/fallahi/extlib/boost-trunk/
>> -L/Users/fallahi/svnwork/dune-trunk/dune-grid/lib -ldunegrid
>> -L/Users/fallahi/extlib/ALUGrid-1.23/lib -lalugrid
>> -L/Users/fallahi/extlib/openmpi-1.4.1/lib -lmpi -lopen-rte -lopen-pal
>> -lutil -L/Users/fallahi/svnwork/dune-trunk/dune-common/lib
>> -ldunecommon -L/Users/fallahi/extlib/openmpi-1.4.1/lib -lmpi
>> -lopen-rte -lopen-pal -lutil
>> -L/Users/fallahi/svnwork/dune-trunk/dune-grid/lib -ldunegrid
>> -L/Users/fallahi/svnwork/dune-trunk/dune-common/lib -ldunecommon
>> -L/Users/fallahi/svnwork/dune-trunk/dune-common/lib -ldunecommon
>> -L/Users/fallahi/svnwork/dune-trunk/dune-grid/lib -ldunegrid
>> -L/Users/fallahi/svnwork/dune-trunk/dune-common/lib -ldunecommon
>> -lm -L/Users/fallahi/extlib/openmpi-1.4.1/lib -lmpi -lopen-rte
>> -lopen-pal -lutil -lm
>> libtool: link: warning: library
>> `/Users/fallahi/extlib/ALUGrid-1.23/lib/libalugrid.la' was moved.
>> libtool: link: warning: library
>> `/Users/fallahi/extlib/ALUGrid-1.23/lib/libalugrid.la' was moved.
>> libtool: link: mpicxx -D_REENTRANT
>> -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H
>> -DENABLE_MPI=1 -DMPICH_IGNORE_CXX_SEEK -O2
>> -I/Users/fallahi/extlib/boost-trunk/include
>> -I/Users/fallahi/svnwork/dune-trunk/dune-common
>> -I/Users/fallahi/svnwork/dune-trunk/dune-grid
>> -I/Users/fallahi/svnwork/dune-trunk/dune-istl -D_REENTRANT
>> -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H
>> -DENABLE_MPI=1 -I/Users/fallahi/svnwork/dune-trunk/dune-common
>> -DGRIDDIM=2 -DWORLDDIM=2 -DYASPGRID -D_REENTRANT
>> -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H
>> -DENABLE_MPI=1 -I/Users/fallahi/extlib/ALUGrid-1.23/include
>> -I/Users/fallahi/extlib/ALUGrid-1.23/include/serial
>> -I/Users/fallahi/extlib/ALUGrid-1.23/include/duneinterface
>> -DENABLE_ALUGRID
>> -I/Users/fallahi/extlib/ALUGrid-1.23/include/parallel
>> -I/Users/fallahi/svnwork/dune-trunk/dune-grid
>> -I/Users/fallahi/svnwork/dune-trunk/dune-istl -DMPICH_IGNORE_CXX_SEEK
>> -O2 -o integration integration-integration.o -Wl,-bind_at_load
>> -L/Users/fallahi/extlib/boost-trunk/
>> -L/Users/fallahi/svnwork/dune-trunk/dune-grid/lib
>> -L/Users/fallahi/svnwork/dune-trunk/dune-common/lib
>> -L/Users/fallahi/extlib/ALUGrid-1.23/lib
>> -L/Users/fallahi/extlib/metis-4.0
>> -L/Users/fallahi/extlib/openmpi-1.4.1/lib
>> /Users/fallahi/svnwork/dune-trunk/dune-grid/lib/.libs/libdunegrid.a
>> /Users/fallahi/extlib/ALUGrid-1.23/lib/libalugrid.a -lmetis
>> /Users/fallahi/svnwork/dune-trunk/dune-common/lib/.libs/libdunecommon.a
>> /Users/fallahi/extlib/openmpi-1.4.1/lib/libmpi.dylib
>> /Users/fallahi/extlib/openmpi-1.4.1/lib/libopen-rte.dylib
>> /Users/fallahi/extlib/openmpi-1.4.1/lib/libopen-pal.dylib -lutil -lm
>> mpicxx -DHAVE_CONFIG_H -I.
>> -I/Users/fallahi/svnwork/dune-trunk/dune-common
>> -I/Users/fallahi/svnwork/dune-trunk/dune-grid
>> -I/Users/fallahi/svnwork/dune-trunk/dune-istl -I.
>> -DMPICH_IGNORE_CXX_SEEK -O2
>> -I/Users/fallahi/extlib/boost-trunk/include -D_REENTRANT
>> -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H
>> -DENABLE_MPI=1 -DMPICH_IGNORE_CXX_SEEK -O2
>> -I/Users/fallahi/extlib/boost-trunk/include
>> -I/Users/fallahi/svnwork/dune-trunk/dune-common
>> -I/Users/fallahi/svnwork/dune-trunk/dune-grid
>> -I/Users/fallahi/svnwork/dune-trunk/dune-istl -D_REENTRANT
>> -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H
>> -DENABLE_MPI=1 -I/Users/fallahi/svnwork/dune-trunk/dune-common
>> -DGRIDDIM=2 -DWORLDDIM=2 -DYASPGRID -D_REENTRANT
>> -I/Users/fallahi/extlib/openmpi-1.4.1/include -DMPIPP_H
>> -DENABLE_MPI=1 -I/Users/fallahi/extlib/ALUGrid-1.23/include
>> -I/Users/fallahi/extlib/ALUGrid-1.23/include/serial
>> -I/Users/fallahi/extlib/ALUGrid-1.23/include/duneinterface
>> -DENABLE_ALUGRID
>> -I/Users/fallahi/extlib/ALUGrid-1.23/include/parallel
>> -I/Users/fallahi/svnwork/dune-trunk/dune-grid
>> -I/Users/fallahi/svnwork/dune-trunk/dune-istl -DMPICH_IGNORE_CXX_SEEK
>> -O2 -MT othergrids-othergrids.o -MD -MP -MF
>> .deps/othergrids-othergrids.Tpo -c -o othergrids-othergrids.o `test
>> -f 'othergrids.cc' || echo './'`othergrids.cc
>> In file included from
>> /Users/fallahi/svnwork/dune-trunk/dune-grid/dune/grid/alugrid/persistentcontainer.hh:5,
>>
>> from
>> /Users/fallahi/svnwork/dune-trunk/dune-grid/dune/grid/alugrid.hh:14,
>> from unitcube_alugrid.hh:7,
>> from unitcube.hh:53,
>> from othergrids.cc:4:
>> /Users/fallahi/svnwork/dune-trunk/dune-grid/dune/grid/utility/persistentcontainer.hh:5:25:
>> error: unordered_map: No such file or directory
>> In file included from
>> /Users/fallahi/svnwork/dune-trunk/dune-grid/dune/grid/onedgrid.hh:22,
>> from othergrids.cc:7:
>> /Users/fallahi/svnwork/dune-trunk/dune-grid/dune/grid/onedgrid/onedgridentity.hh:
>> In member function ‘typename GridImp::Codim<codim>::EntityPointer
>> Dune::OneDGridEntity<0, dim, GridImp>::subEntity(int) const’:
>> /Users/fallahi/svnwork/dune-trunk/dune-grid/dune/grid/onedgrid/onedgridentity.hh:332:
>> warning: ‘topologyId’ is deprecated (declared at
>> /Users/fallahi/svnwork/dune-trunk/dune-grid/dune/grid/genericgeometry/conversion.hh:684)
>>
>> make[2]: *** [othergrids-othergrids.o] Error 1
>> make[1]: *** [all-recursive] Error 1
>> make: *** [all] Error 2
>> --- Failed to build dune-grid-howto ---
>> Terminating dunecontrol due to previous errors!
>>
>>
>> On Dec 1, 2010, at 3:04 PM, Oliver Sander wrote:
>>
>>
>>> Please update dune-common and try again.
>>> --
>>> Oliver
>>>
>>> Am 01.12.2010 14:26, schrieb arya fallahi:
>>>
>>>> Dear Dune,
>>>>
>>>> I just updated my dune copy and I faced with problems in
>>>> compilations. Would you please have a look?
>>>>
>>>> Thanks,
>>>> Arya
>>>>
>>>> pcp034701:dune-trunk fallahi$ uname -a
>>>> Darwin pcp034701.psi.ch 10.5.0 Darwin Kernel Version 10.5.0: Fri
>>>> Nov 5 23:20:39 PDT 2010; root:xnu-1504.9.17~1/RELEASE_I386 i386
>>>>
>>>>
>>>> pcp034701:dune-trunk fallahi$ mpicxx --version
>>>> i686-apple-darwin10-g++-4.2.1 (GCC) 4.2.1 (Apple Inc. build 5659)
>>>> Copyright (C) 2007 Free Software Foundation, Inc.
>>>> This is free software; see the source for copying conditions.
>>>> There is NO
>>>> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR
>>>> PURPOSE.
>>>>
>>>> pcp034701:dune-trunk fallahi$ ./dune-common/bin/dunecontrol update all
>>>> --- going to build dune-common dune-grid dune-istl dune-grid-howto
>>>> hades ---
>>>> --- calling update for dune-common ---
>>>> At revision 6282.
>>>> --- dune-common done ---
>>>> --- calling update for dune-grid ---
>>>> At revision 7198.
>>>> --- dune-grid done ---
>>>> --- calling update for dune-istl ---
>>>> At revision 1413.
>>>> --- dune-istl done ---
>>>> --- calling update for dune-grid-howto ---
>>>> At revision 338.
>>>> --- dune-grid-howto done ---
>>>> --- calling update for hades ---
>>>> At revision 2233.
>>>> --- hades done ---
>>>> --- done ---
>>>>
>>>>
>>>> Found the following Dune-components:
>>>>
>>>> ----------------------------------------
>>>>
>>>> dune-common.............: version 2.1-svn
>>>> ALBERTA.................: no
>>>> ALUGrid.................: version 1.23
>>>> AlgLib for DUNE.........: no
>>>> AmiraMesh...............: no
>>>> GMP.....................: no
>>>> Grape...................: no
>>>> MPI.....................: yes (OpenMPI)
>>>> OpenGL..................: no
>>>> UG......................: no
>>>> psurface................: no
>>>>
>>>> ----------------------------------------
>>>>
>>>> See ./configure --help and config.log for reasons why a component
>>>> wasn't found
>>>>
>>>> configure: creating ./config.status
>>>> config.status: creating Makefile
>>>> config.status: creating lib/Makefile
>>>> config.status: creating doc/appl/refelements/Makefile
>>>> config.status: creating doc/appl/Makefile
>>>> config.status: creating doc/refinement/Makefile
>>>> config.status: creating doc/doxygen/Makefile
>>>> config.status: creating doc/doxygen/Doxyfile
>>>> config.status: creating doc/grids/Makefile
>>>> config.status: creating doc/grids/amc/Makefile
>>>> config.status: creating doc/grids/amiramesh/Makefile
>>>> config.status: creating doc/grids/dgf/Makefile
>>>> config.status: creating doc/grids/gridfactory/Makefile
>>>> config.status: creating doc/grids/gmsh/Makefile
>>>> config.status: creating doc/grids/starcd/Makefile
>>>> config.status: creating doc/Makefile
>>>> config.status: creating dune/Makefile
>>>> config.status: creating dune/grid/Makefile
>>>> config.status: creating dune/grid/test/Makefile
>>>> config.status: creating dune/grid/common/test/Makefile
>>>> config.status: creating dune/grid/common/quadraturerules/Makefile
>>>> config.status: creating dune/grid/common/refinement/Makefile
>>>> config.status: creating dune/grid/common/Makefile
>>>> config.status: creating dune/grid/uggrid/Makefile
>>>> config.status: creating dune/grid/sgrid/Makefile
>>>> config.status: creating dune/grid/albertagrid/Makefile
>>>> config.status: creating dune/grid/albertagrid/test/Makefile
>>>> config.status: creating dune/grid/yaspgrid/Makefile
>>>> config.status: creating dune/grid/onedgrid/Makefile
>>>> config.status: creating dune/grid/utility/Makefile
>>>> config.status: creating dune/grid/utility/test/Makefile
>>>> config.status: creating dune/grid/alugrid/common/Makefile
>>>> config.status: creating dune/grid/alugrid/2d/Makefile
>>>> config.status: creating dune/grid/alugrid/3d/Makefile
>>>> config.status: creating dune/grid/alugrid/Makefile
>>>> config.status: creating dune/grid/io/file/test/Makefile
>>>> config.status: creating dune/grid/io/file/amiramesh/Makefile
>>>> config.status: creating dune/grid/io/file/dgfparser/Makefile
>>>> config.status: creating dune/grid/io/file/dgfparser/test/Makefile
>>>> config.status: creating dune/grid/io/file/dgfparser/utils/Makefile
>>>> config.status: creating dune/grid/io/file/gnuplot/Makefile
>>>> config.status: creating dune/grid/io/file/vtk/Makefile
>>>> config.status: creating dune/grid/io/file/Makefile
>>>> config.status: creating dune/grid/io/visual/grape/Makefile
>>>> config.status: creating dune/grid/io/visual/Makefile
>>>> config.status: creating dune/grid/io/Makefile
>>>> config.status: creating dune/grid/genericgeometry/Makefile
>>>> config.status: creating dune/grid/genericgeometry/test/Makefile
>>>> config.status: creating dune/grid/geometrygrid/Makefile
>>>> config.status: creating m4/Makefile
>>>> config.status: creating dune-grid.pc
>>>> config.status: creating config.h
>>>> config.status: config.h is unchanged
>>>> config.status: executing depfiles commands
>>>> config.status: executing libtool commands
>>>> --- calling make for dune-grid ---
>>>> make
>>>> cd .&& /bin/sh
>>>> /Users/fallahi/svnwork/dune-trunk/dune-grid/missing --run autoheader
>>>> configure.ac:10: warning: PKG_PROG_PKG_CONFIG is m4_require'd but
>>>> not m4_defun'd
>>>> aclocal.m4:11357: DUNE_CHECK_ALL is expanded from...
>>>> configure.ac:10: the top level
>>>> aclocal.m4:11592: DUNE_COMMON_CHECKS is expanded from...
>>>> dependencies.m4:26: DUNE_CHECK_MOD_DEPENDENCIES is expanded from...
>>>> aclocal.m4:11260: DUNE_CHECK_MODULES is expanded from...
>>>> aclocal.m4:11601: DUNE_COMMON_CHECK_MODULE is expanded from...
>>>> rm -f stamp-h1
>>>> touch config.h.in
>>>> cd .&& /bin/sh ./config.status config.h
>>>> config.status: creating config.h
>>>> config.status: config.h is unchanged
>>>> make all-recursive
>>>> Making all in dune
>>>> Making all in grid
>>>> Making all in genericgeometry
>>>> Making all in test
>>>> make[5]: Nothing to be done for `all'.
>>>> make[5]: Nothing to be done for `all-am'.
>>>> Making all in common
>>>> Making all in refinement
>>>> make[5]: Nothing to be done for `all'.
>>>> Making all in test
>>>> make[5]: Nothing to be done for `all'.
>>>> Making all in quadraturerules
>>>> /bin/sh ../../../../libtool --tag=CXX --mode=compile mpicxx
>>>> -DHAVE_CONFIG_H -I. -I../../../..
>>>> -I/Users/fallahi/svnwork/dune-trunk/dune-common -I../../../..
>>>> -DMPICH_IGNORE_CXX_SEEK -O2 -DMPICH_IGNORE_CXX_SEEK -O2 -MT
>>>> quadraturerules.lo -MD -MP -MF .deps/quadraturerules.Tpo -c -o
>>>> quadraturerules.lo quadraturerules.cc
>>>> libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../../../..
>>>> -I/Users/fallahi/svnwork/dune-trunk/dune-common -I../../../..
>>>> -DMPICH_IGNORE_CXX_SEEK -O2 -DMPICH_IGNORE_CXX_SEEK -O2 -MT
>>>> quadraturerules.lo -MD -MP -MF .deps/quadraturerules.Tpo -c
>>>> quadraturerules.cc -o quadraturerules.o
>>>> In file included from ../quadraturerules.hh:15,
>>>> from quadraturerules.cc:3:
>>>> /Users/fallahi/svnwork/dune-trunk/dune-common/dune/common/geometrytype.hh:153:27:
>>>> error: invalid suffix "b0011" on integer constant
>>>> /Users/fallahi/svnwork/dune-trunk/dune-common/dune/common/geometrytype.hh:160:27:
>>>> error: invalid suffix "b0101" on integer constant
>>>> /Users/fallahi/svnwork/dune-trunk/dune-common/dune/common/geometrytype.hh:206:63:
>>>> error: invalid suffix "b0001" on integer constant
>>>> /Users/fallahi/svnwork/dune-trunk/dune-common/dune/common/geometrytype.hh:211:63:
>>>> error: invalid suffix "b0011" on integer constant
>>>> /Users/fallahi/svnwork/dune-trunk/dune-common/dune/common/geometrytype.hh:216:63:
>>>> error: invalid suffix "b0001" on integer constant
>>>> /Users/fallahi/svnwork/dune-trunk/dune-common/dune/common/geometrytype.hh:221:63:
>>>> error: invalid suffix "b0011" on integer constant
>>>> /Users/fallahi/svnwork/dune-trunk/dune-common/dune/common/geometrytype.hh:226:63:
>>>> error: invalid suffix "b0101" on integer constant
>>>> /Users/fallahi/svnwork/dune-trunk/dune-common/dune/common/geometrytype.hh:231:63:
>>>> error: invalid suffix "b0111" on integer constant
>>>> make[5]: *** [quadraturerules.lo] Error 1
>>>> make[4]: *** [all-recursive] Error 1
>>>> make[3]: *** [all-recursive] Error 1
>>>> make[2]: *** [all-recursive] Error 1
>>>> make[1]: *** [all-recursive] Error 1
>>>> make: *** [all] Error 2
>>>> --- Failed to build dune-grid ---
>>>> Terminating dunecontrol due to previous errors!
>>>>
>>>> real 0m56.449s
>>>> user 0m37.592s
>>>> sys 0m18.254s
>>>>
>>>>
>>>> _______________________________________________
>>>> Dune mailing list
>>>> Dune at dune-project.org
>>>> http://lists.dune-project.org/mailman/listinfo/dune
>>>>
>>>>
>>>
>>> --
>>> ************************************************************************
>>>
>>> * Oliver Sander ** email:
>>> sander at mi.fu-berlin.de *
>>> * Freie Universität Berlin ** phone: + 49 (30) 838
>>> 75348 *
>>> * Institut für Mathematik ** URL :
>>> page.mi.fu-berlin.de/~sander *
>>> * Arnimallee 6 **
>>> -------------------------------------*
>>> * 14195 Berlin, Germany ** Member of MATHEON
>>> (www.matheon.de) *
>>> ************************************************************************
>>>
>>>
>>>
>>> _______________________________________________
>>> Dune mailing list
>>> Dune at dune-project.org
>>> http://lists.dune-project.org/mailman/listinfo/dune
>>>
>> Arya Fallahi,
>> Dr. sc. techn., dipl. El. Ing. ETH,
>> Computational Accelerator Scientist
>> Paul Scherrer Institute (PSI),
>> CH-5232 Villigen, Switzerland,
>> arya.fallahi at psi.ch,
>> +41(0)56 310 50 17
>>
>>
>>
>
>
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