[Dune] error running code with MPI

[Christian Engwer]

Hi  Florian,

> 1.) the system:
> gcc (GCC) 4.3.1
> 
> Linux felsim01 2.6.18-194.8.1.el5 #1 SMP Thu Jul 1 16:05:53 EDT 2010
> x86_64 x86_64 x86_64 GNU/Linux

did you compile your code with -fno-strict-aliasing?

Christian

> mpirun (Open MPI) 1.3.3
> 
> 
> 2.) the error:
> 
> [...]
> Created parallel ALUSimplexGrid<3,3> from macro grid file
> '../../../grids/spherical-capacitor.dgf'.
> 
> process[1] : #[total leaf element]=0
> 2010-Sep-03 10:11:07.563938 ::: hades3delectrostatic.cc:   320 :::
> PRODUCTION  #[total leaf element]=7863
> 2010-Sep-03 10:11:07.564055 ::: hades3delectrostatic.cc:   323 :::
> PRODUCTION  #[process in this run]=2
> process[0] : #[total leaf element]=7863
> 2010-Sep-03 10:11:07.564110 :::
> ../globaldatainterface/globaldatainterface.hh:    75 ::: PRODUCTION
> [ Get element tags from macro grid ...
> 2010-Sep-03 10:11:07.567824 :::
> ../globaldatainterface/globaldatainterface.hh:   134 ::: PRODUCTION
> all element tags from macro grid are now available on cpu 0. ]
> 2010-Sep-03 10:11:07.567973 ::: hades3delectrostatic.cc:   353 :::
> PRODUCTION  [parallel - #[global refinement]=0
> 2010-Sep-03 10:11:07.568019 ::: hades3delectrostatic.cc:   374 :::
> PRODUCTION  [parallel - initiate load balance
> 2010-Sep-03 10:11:07.568065 ::: hades3delectrostatic:
> parallel/gitter_pll_sti.h:732: void ALUGridSpace::LinkedObject::Identifier::read(__gnu_cxx::__normal_iterator<const
> int*, std::vector<int, std::allocator<int> > >&, const
> __gnu_cxx::__normal_iterator<const int*, std::vector<int,
> std::allocator<int> > >&): Assertion `pos != end' failed.
> [felsim01:02544] *** Process received signal ***
> hades3delectrostatic: parallel/gitter_pll_sti.h:732: void ALUGridSpace::LinkedObject::Identifier::read(__gnu_cxx::__normal_iterator<const
> int*, std::vector<int, std::allocator<int> > >&, const
> __gnu_cxx::__normal_iterator<const int*, std::vector<int,
> std::allocator<int> > >&): Assertion `pos != end' failed.
> [felsim01:02544] Signal: Aborted (6)
> [felsim01:02544] Signal code:  (-6)
> [felsim01:02543] *** Process received signal ***
> [felsim01:02543] Signal: Aborted (6)
> [felsim01:02543] Signal code:  (-6)
> [felsim01:02543] [ 0] /lib64/libpthread.so.0 [0x35f8a0de60]
> [felsim01:02543] [ 1] /lib64/libc.so.6(gsignal+0x35) [0x35f7e30045]
> [felsim01:02543] [ 2] /lib64/libc.so.6(abort+0x110) [0x35f7e31ae0]
> [felsim01:02543] [ 3] /lib64/libc.so.6(__assert_fail+0xf6) [0x35f7e29756]
> [felsim01:02543] [ 4] ../../../hades3delectrostatic/hades3delectrostatic(_ZN12ALUGridSpace8identifyINS_6Gitter5hedgeEEEvNS_14AccessIteratorIT_E6HandleERSt6vectorISt4pairISt4listIS6_SaIS6_EESB_ESaISC_EERKNS_13MpAccessLocalE+0x1645)
> [0x898de5]
> [felsim01:02543] [ 5] ../../../hades3delectrostatic/hades3delectrostatic(_ZN12ALUGridSpace9GitterPll14MacroGitterPll14identificationERNS_13MpAccessLocalE+0x386)
> [0x82bd16]
> [felsim01:02543] [ 6] ../../../hades3delectrostatic/hades3delectrostatic(_ZN12ALUGridSpace9GitterPll22notifyMacroGridChangesEv+0x75)
> [0x80eba5]
> [felsim01:02543] [ 7] ../../../hades3delectrostatic/hades3delectrostatic(_ZN12ALUGridSpace9GitterPll29loadBalancerGridChangesNotifyEv+0x448)
> [0x8129a8]
> [felsim01:02543] [ 8] ../../../hades3delectrostatic/hades3delectrostatic(_ZN12ALUGridSpace13GitterDunePll15duneLoadBalanceEv+0xd)
> [0x80c25d]
> [felsim01:02543] [ 9]
> ../../../hades3delectrostatic/hades3delectrostatic(main+0x199e)
> [0x6369ae]
> [felsim01:02543] [10] /lib64/libc.so.6(__libc_start_main+0xf4)
> [0x35f7e1d8a4]
> [felsim01:02543] [11] ../../../hades3delectrostatic/hades3delectrostatic(_ZNSt8ios_base4InitD1Ev+0x51)
> [0x632b39]
> [felsim01:02543] *** End of error message ***
> [felsim01:02544] [ 0] /lib64/libpthread.so.0 [0x35f8a0de60]
> [felsim01:02544] [ 1] /lib64/libc.so.6(gsignal+0x35) [0x35f7e30045]
> [felsim01:02544] [ 2] /lib64/libc.so.6(abort+0x110) [0x35f7e31ae0]
> [felsim01:02544] [ 3] /lib64/libc.so.6(__assert_fail+0xf6) [0x35f7e29756]
> [felsim01:02544] [ 4] ../../../hades3delectrostatic/hades3delectrostatic(_ZN12ALUGridSpace8identifyINS_6Gitter5hedgeEEEvNS_14AccessIteratorIT_E6HandleERSt6vectorISt4pairISt4listIS6_SaIS6_EESB_ESaISC_EERKNS_13MpAccessLocalE+0x1645)
> [0x898de5]
> [felsim01:02544] [ 5] ../../../hades3delectrostatic/hades3delectrostatic(_ZN12ALUGridSpace9GitterPll14MacroGitterPll14identificationERNS_13MpAccessLocalE+0x386)
> [0x82bd16]
> [felsim01:02544] [ 6] ../../../hades3delectrostatic/hades3delectrostatic(_ZN12ALUGridSpace9GitterPll22notifyMacroGridChangesEv+0x75)
> [0x80eba5]
> [felsim01:02544] [ 7] ../../../hades3delectrostatic/hades3delectrostatic(_ZN12ALUGridSpace9GitterPll29loadBalancerGridChangesNotifyEv+0x448)
> [0x8129a8]
> [felsim01:02544] [ 8] ../../../hades3delectrostatic/hades3delectrostatic(_ZN12ALUGridSpace13GitterDunePll15duneLoadBalanceEv+0xd)
> [0x80c25d]
> [felsim01:02544] [ 9]
> ../../../hades3delectrostatic/hades3delectrostatic(main+0x199e)
> [0x6369ae]
> [felsim01:02544] [10] /lib64/libc.so.6(__libc_start_main+0xf4)
> [0x35f7e1d8a4]
> [felsim01:02544] [11] ../../../hades3delectrostatic/hades3delectrostatic(_ZNSt8ios_base4InitD1Ev+0x51)
> [0x632b39]
> [felsim01:02544] *** End of error message ***
> --------------------------------------------------------------------------
> mpirun noticed that process rank 1 with PID 2544 on node felsim01
> exited on signal 6 (Aborted).
> --------------------------------------------------------------------------
> 
>