[Dune] [#946] Test failure: genericgeometry/testmapping (Attachment added)

Tue Aug 23 12:44:21 CEST 2011

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A new Flyspray task has been opened.  Details are below. 

User who did this - Elias Pipping (pipping) 

Attached to Project - Dune
Summary - Test failure: genericgeometry/testmapping
Task Type - Bug Report
Category - Grid
Status - Unconfirmed
Assigned To - 
Operating System - Unspecified / All
Severity - Low
Priority - Normal
Reported Version - 2.1
Due in Version - Undecided
Due Date - Undecided
Details - The test dune/grid/genericgeometry/test/testmapping from
dune-grid 2.1.0 fails for me.

That happens with vanilla copies of dune-common 2.1.0 and dune-grid
2.1.0 on a debian 6.0.2 box, using gcc 4.4.5 and glibc 2.11.2.

On another (non-debian) box that has gcc 4.4.6 and glibc 2.12.1, I
cannot reproduce this problem -- it has a completely different set of
software on it, though.

Here's what happens:

poncelet% ./testmapping
YaspGridParameterBlock: Parameter 'overlap' not specified, defaulting to '0'.
ZERO ERRORS in mapping.phi!!!!!!!
ZERO ERRORS in mapping.det!!!!!!!
ZERO ERRORS in mapping.jacobianT!!!!!!!
ZERO ERRORS in mapping.volume!!!!!!!
ZERO ERRORS in mapping.normal!!!!!!!
*** glibc detected *** ./testmapping: double free or corruption (!prev): 0x000000000166fbe0 ***
======= Backtrace: =========
/lib/libc.so.6(+0x71ad6)[0x7f91a33dfad6]
poncelet% ./testmapping
YaspGridParameterBlock: Parameter 'overlap' not specified, defaulting to '0'.
ZERO ERRORS in mapping.phi!!!!!!!
ZERO ERRORS in mapping.det!!!!!!!
ZERO ERRORS in mapping.jacobianT!!!!!!!
ZERO ERRORS in mapping.volume!!!!!!!
ZERO ERRORS in mapping.normal!!!!!!!
*** glibc detected *** ./testmapping: double free or corruption (!prev): 0x000000000071cbe0 ***
======= Backtrace: =========
/lib/libc.so.6(+0x71ad6)[0x7fb9ffe6bad6]
/lib/libc.so.6(cfree+0x6c)[0x7fb9ffe7084c]
./testmapping[0x44248e]
./testmapping[0x4421d4]
./testmapping[0x441ea2]
./testmapping(_ZNSt11_Deque_baseIbSaIbEED2Ev+0x3e)[0x441aec]
./testmapping[0x441a05]
./testmapping[0x4413ca]
./testmapping(_ZN4Dune11DebugStreamILj1ELj1ELj1ENS_16greater_or_equalEED1Ev+0x22f)[0x443351]
/lib/libc.so.6(__cxa_finalize+0xa5)[0x7fb9ffe30965]
/usr/lib/libdunecommon.so.0(+0x58a6)[0x7fba005f88a6]
======= Memory map: ========
00400000-00461000 r-xp 00000000 00:1a 239298273                          /home/cocktail/pipping/dune-4.4.5/dune-grid-2.1.0/dune/grid/genericgeometry/test/testmapping
00661000-00662000 rw-p 00061000 00:1a 239298273                          /home/cocktail/pipping/dune-4.4.5/dune-grid-2.1.0/dune/grid/genericgeometry/test/testmapping

00662000-00664000 rw-p 00000000 00:00 0 
0071b000-0077e000 rw-p 00000000 00:00 0                                  [heap]
7fb9f8000000-7fb9f8021000 rw-p 00000000 00:00 0 
7fb9f8021000-7fb9fc000000 ---p 00000000 00:00 0 
7fb9ffdfa000-7fb9fff52000 r-xp 00000000 fe:00 361084                     /lib/libc-2.11.2.so
7fb9fff52000-7fba00151000 ---p 00158000 fe:00 361084                     /lib/libc-2.11.2.so
7fba00151000-7fba00155000 r--p 00157000 fe:00 361084                     /lib/libc-2.11.2.so
7fba00155000-7fba00156000 rw-p 0015b000 fe:00 361084                     /lib/libc-2.11.2.so
7fba00156000-7fba0015b000 rw-p 00000000 00:00 0 
7fba0015b000-7fba00171000 r-xp 00000000 00:1a 101599591                  /home/cocktail/pipping/gcc-inst-4.4.5/lib64/libgcc_s.so.1
7fba00171000-7fba00370000 ---p 00016000 00:1a 101599591                  /home/cocktail/pipping/gcc-inst-4.4.5/lib64/libgcc_s.so.1
7fba00370000-7fba00371000 rw-p 00015000 00:1a 101599591                  /home/cocktail/pipping/gcc-inst-4.4.5/lib64/libgcc_s.so.1
7fba00371000-7fba003f1000 r-xp 00000000 fe:00 361415                     /lib/libm-2.11.2.so
7fba003f1000-7fba005f1000 ---p 00080000 fe:00 361415                     /lib/libm-2.11.2.so
7fba005f1000-7fba005f2000 r--p 00080000 fe:00 361415                     /lib/libm-2.11.2.so
7fba005f2000-7fba005f3000 rw-p 00081000 fe:00 361415                     /lib/libm-2.11.2.so
7fba005f3000-7fba00609000 r-xp 00000000 fe:00 369737                     /usr/lib/libdunecommon.so.0.0.0
7fba00609000-7fba00809000 ---p 00016000 fe:00 369737                     /usr/lib/libdunecommon.so.0.0.0
7fba00809000-7fba0080a000 rw-p 00016000 fe:00 369737                     /usr/lib/libdunecommon.so.0.0.0
7fba0080a000-7fba008fb000 r-xp 00000000 00:1a 101597186                  /home/cocktail/pipping/gcc-inst-4.4.5/lib64/libstdc++.so.6.0.13
7fba008fb000-7fba00afb000 ---p 000f1000 00:1a 101597186                  /home/cocktail/pipping/gcc-inst-4.4.5/lib64/libstdc++.so.6.0.13
7fba00afb000-7fba00b02000 r--p 000f1000 00:1a 101597186                  /home/cocktail/pipping/gcc-inst-4.4.5/lib64/libstdc++.so.6.0.13
7fba00b02000-7fba00b04000 rw-p 000f8000 00:1a 101597186                  /home/cocktail/pipping/gcc-inst-4.4.5/lib64/libstdc++.so.6.0.13
7fba00b04000-7fba00b19000 rw-p 00000000 00:00 0 
7fba00b19000-7fba00b24000 r-xp 00000000 fe:00 369719                     /usr/lib/libdevS.so.0.0.0
7fba00b24000-7fba00d23000 ---p 0000b000 fe:00 369719                     /usr/lib/libdevS.so.0.0.0
7fba00d23000-7fba00d24000 rw-p 0000a000 fe:00 369719                     /usr/lib/libdevS.so.0.0.0
7fba00d24000-7fba00d26000 rw-p 00000000 00:00 0 
7fba00d26000-7fba00f50000 r-xp 00000000 fe:00 370144                     /usr/lib/libugS3.so.0.0.0
7fba00f50000-7fba0114f000 ---p 0022a000 fe:00 370144                     /usr/lib/libugS3.so.0.0.0
7fba0114f000-7fba0115c000 rw-p 00229000 fe:00 370144                     /usr/lib/libugS3.so.0.0.0
7fba0115c000-7fba011e7000 rw-p 00000000 00:00 0 
7fba011e7000-7fba013e2000 r-xp 00000000 fe:00 370142                     /usr/lib/libugS2.so.0.0.0
7fba013e2000-7fba015e1000 ---p 001fb000 fe:00 370142                     /usr/lib/libugS2.so.0.0.0
7fba015e1000-7fba015e9000 rw-p 001fa000 fe:00 370142                     /usr/lib/libugS2.so.0.0.0
7fba015e9000-7fba01649000 rw-p 00000000 00:00 0 
7fba01649000-7fba016a6000 r-xp 00000000 fe:00 369875                     /usr/lib/libgmp.so.3.5.2
7fba016a6000-7fba018a6000 ---p 0005d000 fe:00 369875                     /usr/lib/libgmp.so.3.5.2
7fba018a6000-7fba018a7000 rw-p 0005d000 fe:00 369875                     /usr/lib/libgmp.so.3.5.2
7fba018a7000-7fba018aa000 r-xp 00000000 fe:00 576111                     /usr/lib/libgmpxx.so.4.1.2
7fba018aa000-7fba01aaa000 ---p 00003000 fe:00 576111                     /usr/lib/libgmpxx.so.4.1.2
7fba01aaa000-7fba01aab000 rw-p 00003000 fe:00 576111                     /usr/lib/libgmpxx.so.4.1.2
7fba01aab000-7fba01ac9000 r-xp 00000000 fe:00 361367                     /lib/ld-2.11.2.so

7fba01ca0000-7fba01ca6000 rw-p 00000000 00:00 0 
7fba01cc5000-7fba01cc8000 rw-p 00000000 00:00 0 
7fba01cc8000-7fba01cc9000 r--p 0001d000 fe:00 361367                     /lib/ld-2.11.2.so
7fba01cc9000-7fba01cca000 rw-p 0001e000 fe:00 361367                     /lib/ld-2.11.2.so
7fba01cca000-7fba01ccb000 rw-p 00000000 00:00 0 
7fff602aa000-7fff602bf000 rw-p 00000000 00:00 0                          [stack]
7fff603ff000-7fff60400000 r-xp 00000000 00:00 0                          [vdso]
ffffffffff600000-ffffffffff601000 r-xp 00000000 00:00 0                  [vsyscall]
zsh: abort      ./testmapping

Here's a backtrace:

poncelet% gdb ./testmapping
[..]
(gdb) bt
#0  0x00007ffff6160165 in *__GI_raise (sig=<value optimized out>) at ../nptl/sysdeps/unix/sysv/linux/raise.c:64
#1  0x00007ffff6162f70 in *__GI_abort () at abort.c:92
#2  0x00007ffff619627b in __libc_message (do_abort=<value optimized out>, fmt=<value optimized out>) at ../sysdeps/unix/sysv/linux/libc_fatal.c:189
#3  0x00007ffff619fad6 in malloc_printerr (action=3, str=0x7ffff6256ac8 "double free or corruption (!prev)", ptr=<value optimized out>) at malloc.c:6267
#4  0x00007ffff61a484c in *__GI___libc_free (mem=<value optimized out>) at malloc.c:3739
#5  0x000000000044248e in __gnu_cxx::new_allocator<bool>::deallocate (this=0x663318, __p=0x665be0) at /home/cocktail/pipping/gcc-inst-4.4.5/lib/gcc/x86_64-unknown-linux-gnu/4.4.5/../../../../include/c++/4.4.5/ext/new_allocator.h:95
#6  0x00000000004421d4 in std::_Deque_base<bool, std::allocator<bool> >::_M_deallocate_node (this=0x663318, __p=0x665be0)
    at /home/cocktail/pipping/gcc-inst-4.4.5/lib/gcc/x86_64-unknown-linux-gnu/4.4.5/../../../../include/c++/4.4.5/bits/stl_deque.h:450
#7  0x0000000000441ea2 in std::_Deque_base<bool, std::allocator<bool> >::_M_destroy_nodes (this=0x663318, __nstart=0x665b88, __nfinish=0x665b90)
    at /home/cocktail/pipping/gcc-inst-4.4.5/lib/gcc/x86_64-unknown-linux-gnu/4.4.5/../../../../include/c++/4.4.5/bits/stl_deque.h:553
#8  0x0000000000441aec in ~_Deque_base (this=0x663318, __in_chrg=<value optimized out>) at /home/cocktail/pipping/gcc-inst-4.4.5/lib/gcc/x86_64-unknown-linux-gnu/4.4.5/../../../../include/c++/4.4.5/bits/stl_deque.h:476
#9  0x0000000000441a05 in ~deque (this=0x663318, __in_chrg=<value optimized out>) at /home/cocktail/pipping/gcc-inst-4.4.5/lib/gcc/x86_64-unknown-linux-gnu/4.4.5/../../../../include/c++/4.4.5/bits/stl_deque.h:790
#10 0x00000000004413ca in ~stack (this=0x663318, __in_chrg=<value optimized out>) at /home/cocktail/pipping/gcc-inst-4.4.5/lib/gcc/x86_64-unknown-linux-gnu/4.4.5/../../../../include/c++/4.4.5/bits/stl_stack.h:93
#11 0x0000000000443351 in ~DebugStream (this=0x663300, __in_chrg=<value optimized out>) at debugstream.hh:250
#12 0x00007ffff6164965 in __cxa_finalize (d=0x7ffff6b3d7e0) at cxa_finalize.c:56
#13 0x00007ffff692c8a6 in ?? () from /usr/lib/libdunecommon.so.0
#14 0x000000000000000d in ?? ()
#15 0x0000000000000000 in ?? ()
(gdb) 

Here is how testmapping is linked:

/bin/bash ../../../../libtool --tag=CXX   --mode=link /home/cocktail/pipping/gcc-inst-4.4.5/bin/g++ -std=c++0x  -O0 -ggdb3        -o testmapping testmapping.o -L/usr/lib -lgmpxx -lgmp -lugS2 -lugS3 -ldevS  -L/home/cocktail/pipping/dune-4.4.5/dune-common-2.1.0/lib -ldunecommon   -L/home/cocktail/pipping/dune-4.4.5/dune-common-2.1.0/lib -ldunecommon  -L/home/cocktail/pipping/dune-4.4.5/dune-common-2.1.0/lib -ldunecommon   -lm  ../../../../dune/grid/libgrid.la -L/home/cocktail/pipping/dune-4.4.5/dune-common-2.1.0/lib -ldunecommon  -lm 

If all the occurrences of -ldunecommon are stripped, the test
passes. Furthermore, the test can be reduced down to

poncelet% cat testmapping.cc
#include <config.h>

#include <string>
#include <sstream>

using namespace Dune;

int main ( int argc, char **argv ) 
{
  std::stringstream gridN;
  gridN << "../../../../doc/grids/dgf/grid" << GridSelector::GridType::dimension << "Y.dgf";
  std::string gridName = gridN.str();

  GridPtr< GridSelector::GridType > grid( gridName );

  return 0;
}
poncelet% 

And the double free/corruption will still occur.

I'm attaching dune-grid's config.log.

One or more files have been attached.

More information can be found at the following URL:
http://www.dune-project.org/flyspray/index.php?do=details&task_id=946

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