[Dune] [#895] duneproject does not find all installed modules

[Dune]

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The following task has a new comment added:

FS#895 - duneproject does not find all installed modules
User who did this - Martin Nolte (nolte)

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The fix affected dunecontrol in the release, so I was forced to revert it.

The output for build dune-common is:
--- going to build dune-common  ---
--- calling all for dune-common ---
--- calling autogen for dune-common ---
--> dunedoxynize...
Generating doc/doxygen/Doxyfile.in from 
    global style
    and dune-common config
    ... done
--> libtoolize...
libtoolize: putting auxiliary files in `.'.
libtoolize: linking file `./ltmain.sh'
libtoolize: Remember to add `LT_INIT' to configure.ac.
libtoolize: Consider adding `AC_CONFIG_MACRO_DIR([m4])' to configure.ac and
libtoolize: rerunning libtoolize, to keep the correct libtool macros in-tree.
libtoolize: Consider adding `-I m4' to ACLOCAL_AMFLAGS in Makefile.am.
--> ERROR: multiple definition of module dune-common
previous defined in:
  /usr/people/nolte/numerics/release-2.1.0/dune-common/dune.module
redefined in:
  /usr/people/nolte/numerics/release-2.1.0/dune-common/dune.module
Execution of dunecontrol terminated due to errors!
--- Failed to build dune-common ---
Terminating dunecontrol due to previous errors!
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More information can be found at the following URL:
http://www.dune-project.org/flyspray/index.php?do=details&task_id=895#comment2487

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