[Dune] Periodic Face Transformation Block in DGF Format, what is wrong ?
Benedikt Oswald
benedikt.oswald at psi.ch
Tue Sep 6 16:59:57 CEST 2011
Thanks, the DGF file is attached.
The Dune, compiler and machine version are at the end of this mail.
Should I also do a bug report with flyspray ?
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Greetings,Benedikt
On Sep 6, 2011, at 4:56 PM, Martin Nolte wrote:
> Hi Benedikt,
>
> the block looks perfectly ok to me. Could you please file a decent bug report
> including the DGF file?
>
> Best,
>
> Martin
>
> On 09/06/2011 03:45 PM, Benedikt Oswald wrote:
>> Dear Dune, when I use PERIODICFACETRANSFORMATION a in a otherwise perfectly
>> legal DGF File
>> in order to denote a grid that is:
>>
>> periodic in x by 1 unit
>> periodic in y by 2 units
>> and not periodic in y direction
>>
>>
>> PERIODICFACETRANSFORMATION
>> % set periodic boundaries in x,y,z direction with periodicity px= 1.0 and py=2.0
>> 1 0 0, 0 1 0, 0 0 1 + 1.0 0.0 0.0
>> 1 0 0, 0 1 0, 0 0 1 + 0.0 2.0 0.0
>>
>>
>>
>>
>> then the DGF parser complains with:
>>
>> Dune reported error: DGFException
>> [PeriodicFaceTransformationBlock:periodicfacetrans.cc:32]: Error in block
>> PERIODICFACETRANSFORMATION (line 2): Not enough entries in matrix row 0.
>> Dune reported error: DGFException
>> [PeriodicFaceTransformationBlock:periodicfacetrans.cc:32]: Error in block
>> PERIODICFACETRANSFORMATION (line 2): Not enough entries in matrix row 0.
>> Dune reported error: DGFException
>> [PeriodicFaceTransformationBlock:periodicfacetrans.cc:32]: Error in block
>> PERIODICFACETRANSFORMATION (line 2): Not enough entries in matrix row 0.
>> Dune reported error: DGFException
>> [PeriodicFaceTransformationBlock:periodicfacetrans.cc:32]: Error in block
>> PERIODICFACETRANSFORMATION (line 2): Not enough entries in matrix row 0.
>> Dune reported error: DGFException
>> [PeriodicFaceTransformationBlock:periodicfacetrans.cc:32]: Error in block
>> PERIODICFACETRANSFORMATION (line 2): Not enough entries in matrix row 0.
>> Dune reported error: DGFException
>> [PeriodicFaceTransformationBlock:periodicfacetrans.cc:32]: Error in block
>> PERIODICFACETRANSFORMATION (line 2): Not enough entries in matrix row 0.
>> Dune reported error: DGFException
>> [PeriodicFaceTransformationBlock:periodicfacetrans.cc:32]: Error in block
>> PERIODICFACETRANSFORMATION (line 2): Not enough entries in matrix row 0.
>> Dune reported error: DGFException
>> [PeriodicFaceTransformationBlock:periodicfacetrans.cc:32]: Error in block
>> PERIODICFACETRANSFORMATION (line 2): Not enough entries in matrix row 0.
>>
>>
>> What is wrong with my specification ? Indeed, I derived it from the DGF format
>> description for 2D:
>>
>> *PeriodicFaceTransformation*
>> Each line describes an affine transformation that shall be used to glue grid
>> boundaries together. The transformation is denoted as /matrix/ + /shift/. The
>> following 2d example describes a shift by the first unit vector:
>>
>> 1 0, 0 1 + 1 0
>>
>>
>> I use ALUGrid for simplices.
>>
>>
>> thanks for having a look! Greetings, Benedikt
>>
>> PS: dune versions are:
>>
>> odysseus:hades oswald$ svn info ../dune-common/
>> Path: ../dune-common
>> URL: https://svn.dune-project.org/svn/dune-common/trunk
>> Repository Root: https://svn.dune-project.org/svn/dune-common
>> Repository UUID: 419231ca-4411-0410-aba2-fc6cf8c4f609
>> Revision: 6491
>> Node Kind: directory
>> Schedule: normal
>> Last Changed Author: sander
>> Last Changed Rev: 6491
>> Last Changed Date: 2011-08-30 10:56:22 +0200 (Tue, 30 Aug 2011)
>>
>> odysseus:hades oswald$ svn info ../dune-grid
>> Path: ../dune-grid
>> URL: https://svn.dune-project.org/svn/dune-grid/trunk
>> Repository Root: https://svn.dune-project.org/svn/dune-grid
>> Repository UUID: f82f27de-4411-0410-b156-930a902cda50
>> Revision: 7671
>> Node Kind: directory
>> Schedule: normal
>> Last Changed Author: mnolte
>> Last Changed Rev: 7671
>> Last Changed Date: 2011-09-03 15:55:55 +0200 (Sat, 03 Sep 2011)
>>
>> odysseus:hades oswald$ svn info ../dune-grid-howto/
>> Path: ../dune-grid-howto
>> URL: https://svn.dune-project.org/svn/dune-grid-howto/trunk
>> Repository Root: https://svn.dune-project.org/svn/dune-grid-howto
>> Repository UUID: 971b7fa1-7d12-0410-b1b7-9c127676b1f7
>> Revision: 360
>> Node Kind: directory
>> Schedule: normal
>> Last Changed Author: sander
>> Last Changed Rev: 358
>> Last Changed Date: 2011-05-26 17:50:48 +0200 (Thu, 26 May 2011)
>>
>> odysseus:hades oswald$ svn info ../dune-istl/
>> Path: ../dune-istl
>> URL: https://svn.dune-project.org/svn/dune-istl/trunk
>> Repository Root: https://svn.dune-project.org/svn/dune-istl
>> Repository UUID: 8c7282f0-4411-0410-8e4f-cdd3e049afb8
>> Revision: 1495
>> Node Kind: directory
>> Schedule: normal
>> Last Changed Author: sander
>> Last Changed Rev: 1495
>> Last Changed Date: 2011-08-30 11:03:49 +0200 (Tue, 30 Aug 2011)
>>
>> odysseus:hades oswald$ gcc --v
>> Using built-in specs.
>> Target: x86_64-apple-darwin10.4.0
>> Configured with: ./configure --prefix=/Users/oswald/extlib/gcc/gcc-4.4.5
>> --with-gmp=/Users/oswald/extlib/gmp-5.0.1
>> --with-mpfr=/Users/oswald/extlib/mpfr-3.0
>> --with-mpc=/Users/oswald/extlib/mpc-0.8.2
>> --with-ppl=/Users/oswald/extlib/ppl-0.11
>> --with-cloog=/Users/oswald/extlib/cloog-ppl-trunk
>> Thread model: posix
>> gcc version 4.4.5 (GCC)
>> odysseus:hades oswald$ uname .a
>> usage: uname [-amnprsv]
>> odysseus:hades oswald$ uname -a
>> Darwin odysseus.psi.ch <http://odysseus.psi.ch> 10.8.0 Darwin Kernel Version
>> 10.8.0: Tue Jun 7 16:33:36 PDT 2011; root:xnu-1504.15.3~1/RELEASE_I386 i386
>> odysseus:hades oswald$
>>
>>
>>
>> --------------------------------------------------------------------------------------------------------------------------------------------------------------------
>> Benedikt Oswald, Dr. sc. techn., dipl. El. Ing. ETH, www.psi.ch
>> <http://www.psi.ch>, Computational Accelerator Scientist, http://amas.web.psi.ch
>> Paul Scherrer Institute (PSI), CH-5232 Villigen, Suisse,
>> benedikt.oswald at psi.ch <mailto:benedikt.oswald at psi.ch>, +41(0)56 310 32 12
>>
>> "Passion is required for any great work, and for the revolution passion and
>> audacity are required in big doses.",
>> Ernesto 'Che' Guevara, Letter to his parents.
>> --------------------------------------------------------------------------------------------------------------------------------------------------------------------
>>
>>
>>
>> _______________________________________________
>> Dune mailing list
>> Dune at dune-project.org
>> http://lists.dune-project.org/mailman/listinfo/dune
>
> --
> Martin Nolte <nolte at mathematik.uni-freiburg.de>
>
> Universität Freiburg phone: +49-761-203-5630
> Abteilung für angewandte Mathematik fax: +49-761-203-5632
> Hermann-Herder-Straße 10
> 79104 Freiburg, Germany
>
> _______________________________________________
> Dune mailing list
> Dune at dune-project.org
> http://lists.dune-project.org/mailman/listinfo/dune
--------------------------------------------------------------------------------------------------------------------------------------------------------------------
Benedikt Oswald, Dr. sc. techn., dipl. El. Ing. ETH, www.psi.ch, Computational Accelerator Scientist, http://amas.web.psi.ch
Paul Scherrer Institute (PSI), CH-5232 Villigen, Suisse, benedikt.oswald at psi.ch, +41(0)56 310 32 12
"Passion is required for any great work, and for the revolution passion and audacity are required in big doses.",
Ernesto 'Che' Guevara, Letter to his parents.
--------------------------------------------------------------------------------------------------------------------------------------------------------------------
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