[Dune] Problems with using the parmetis flags in the opts files

Mon Mar 5 13:11:11 CET 2012

Hi Benedekt,

Thanks for the notification. I removed the bug and it should work
again. Please check and yell if there are still problems.

Cheers,

Markus

On Mon, Mar 05, 2012 at 11:40:43AM +0100, Benedikt Oswald wrote:
> Dear Dune Developer,
> 
> I just updated from dune trunk, cf. versions below, and run into problems with an empty library option … -l …
> which I could track down to using parmetis. I then ran the test program in dune-istl paamt, i.e.
> 
> make pamgtest
> 
> which then gives the error message in the linking phase:
> 
> /bin/sh ../../../../libtool --tag=CXX   --mode=link mpicxx -std=c++0x  -DMPICH_IGNORE_CXX_SEEK -Wall -O2 -g0 --no-strict-aliasing -I/Users/oswald/extlib/superlu/4.3/gcc/4.6.2/SRC -DSUPERLU_NTYP=3 -DUSE_PAMG_FOR_HADES3DDGFD -L/Users/oswald/extlib/parmetis/3.2.0/openmpi/1.4.4/gcc/4.6.2 -lparmetis -framework vecLib   -L/Users/oswald/svnwork/dune-trunk/dune-common/lib -ldunecommon      -o pamgtest pamgtest-parallelamgtest.o -L/Users/oswald/extlib/parmetis/3.2.0/openmpi/1.4.4/gcc/4.6.2 -l -L/Users/oswald/extlib/openmpi/1.4.4/gcc/4.6.2/lib -lmpi -lopen-rte -lopen-pal -lutil -lm /Users/oswald/extlib/superlu/4.3/gcc/4.6.2/lib/libsuperlu_4.2.a  -L/Users/oswald/extlib/gcc/4.6.2/gcc/4.6.2/lib/gcc/x86_64-apple-darwin11.2.0/4.6.2 -L/Users/oswald/extlib/gcc/4.6.2/gcc/4.6.2/lib/gcc/x86_64-apple-darwin11.2.0/4.6.2/../../.. -lgfortran -lquadmath -lm -L/Users/oswald/extlib/openmpi/1.4.4/gcc/4.6.2/lib -lmpi -lopen-rte -lopen-pal -lutil  -lm 
> libtool: link: mpicxx -std=c++0x -DMPICH_IGNORE_CXX_SEEK -Wall -O2 -g0 --no-strict-aliasing -I/Users/oswald/extlib/superlu/4.3/gcc/4.6.2/SRC -DSUPERLU_NTYP=3 -DUSE_PAMG_FOR_HADES3DDGFD -o pamgtest pamgtest-parallelamgtest.o -Wl,-bind_at_load  -L/Users/oswald/extlib/parmetis/3.2.0/openmpi/1.4.4/gcc/4.6.2 -L/Users/oswald/svnwork/dune-trunk/dune-common/lib /Users/oswald/svnwork/dune-trunk/dune-common/lib/.libs/libdunecommon.a -lparmetis -l -L/Users/oswald/extlib/openmpi/1.4.4/gcc/4.6.2/lib /Users/oswald/extlib/superlu/4.3/gcc/4.6.2/lib/libsuperlu_4.2.a -L/Users/oswald/extlib/gcc/4.6.2/gcc/4.6.2/lib/gcc/x86_64-apple-darwin11.2.0/4.6.2 -L/Users/oswald/extlib/gcc/4.6.2/gcc/4.6.2/lib/gcc/x86_64-apple-darwin11.2.0/4.6.2/../../.. /Users/oswald/extlib/gcc/4.6.2/gcc/4.6.2/lib/libgfortran.dylib /Users/oswald/extlib/gcc/4.6.2/gcc/4.6.2/lib/libquadmath.dylib /Users/oswald/extlib/openmpi/1.4.4/gcc/4.6.2/lib/libmpi.dylib /Users/oswald/extlib/openmpi/1.4.4/gcc/4.6.2/lib/libopen-rte.dylib /Users/oswald/extlib/openmpi/1.4.4/gcc/4.6.2/lib/libopen-pal.dylib -lutil -lm -framework vecLib
> ld: library not found for -l-L/Users/oswald/extlib/openmpi/1.4.4/gcc/4.6.2/lib
> collect2: ld returned 1 exit status
> 
> 
> 
> Thanks for having a look, Benedikt
> 
> 
> ==================================
> 
> odysseus:dune-trunk oswald$ uname -a
> Darwin odysseus.psi.ch 11.3.0 Darwin Kernel Version 11.3.0: Thu Jan 12 18:47:41 PST 2012; root:xnu-1699.24.23~1/RELEASE_X86_64 x86_64
> odysseus:dune-trunk oswald$ 
> 
> 
> 
> ==================================
> 
> odysseus:dune-trunk oswald$ ./versioninfo.sh 
> Path: .
> URL: https://svn.dune-project.org/svn/dune-common/trunk
> Repository Root: https://svn.dune-project.org/svn/dune-common
> Repository UUID: 419231ca-4411-0410-aba2-fc6cf8c4f609
> Revision: 6578
> Node Kind: directory
> Schedule: normal
> Last Changed Author: mblatt
> Last Changed Rev: 6575
> Last Changed Date: 2012-03-03 08:49:29 +0100 (Sat, 03 Mar 2012)
> 
> Path: .
> URL: https://svn.dune-project.org/svn/dune-geometry/trunk
> Repository Root: https://svn.dune-project.org/svn/dune-geometry
> Repository UUID: e31b3757-9ccd-424d-b11c-a976522ded21
> Revision: 46
> Node Kind: directory
> Schedule: normal
> Last Changed Author: mnolte
> Last Changed Rev: 46
> Last Changed Date: 2012-02-20 17:35:11 +0100 (Mon, 20 Feb 2012)
> 
> Path: .
> URL: https://svn.dune-project.org/svn/dune-grid/trunk
> Repository Root: https://svn.dune-project.org/svn/dune-grid
> Repository UUID: f82f27de-4411-0410-b156-930a902cda50
> Revision: 7923
> Node Kind: directory
> Schedule: normal
> Last Changed Author: robertk
> Last Changed Rev: 7923
> Last Changed Date: 2012-03-02 14:33:41 +0100 (Fri, 02 Mar 2012)
> 
> Path: .
> URL: https://svn.dune-project.org/svn/dune-istl/trunk
> Repository Root: https://svn.dune-project.org/svn/dune-istl
> Repository UUID: 8c7282f0-4411-0410-8e4f-cdd3e049afb8
> Revision: 1538
> Node Kind: directory
> Schedule: normal
> Last Changed Author: mnolte
> Last Changed Rev: 1538
> Last Changed Date: 2012-02-15 13:48:07 +0100 (Wed, 15 Feb 2012)
> 
> Path: .
> URL: https://svn.dune-project.org/svn/dune-grid-howto/trunk
> Repository Root: https://svn.dune-project.org/svn/dune-grid-howto
> Repository UUID: 971b7fa1-7d12-0410-b1b7-9c127676b1f7
> Revision: 371
> Node Kind: directory
> Schedule: normal
> Last Changed Author: sander
> Last Changed Rev: 371
> Last Changed Date: 2012-02-18 19:50:55 +0100 (Sat, 18 Feb 2012)
> 
> 
> --------------------------------------------------------------------------------------------------------------------------------------------------------------------
> Benedikt Oswald, Dr. sc. techn., dipl. El. Ing. ETH, www.psi.ch, GFA, www.hades3d.ch
> Paul Scherrer  Institute (PSI), CH-5232 Villigen, Suisse, benedikt.oswald at psi.ch, +41(0)56 310 32 12
> 
> "Passion is required for any great work, and for the revolution passion and audacity are required in big doses.",
>  Ernesto 'Che' Guevara, Letter to his parents.
> --------------------------------------------------------------------------------------------------------------------------------------------------------------------
> 
> 
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