[Dune] UG grid problem: ID overflow DDD_HdrConstructor

Oliver Sander sander at igpm.rwth-aachen.de
Wed Nov 28 10:14:49 CET 2012


Thanks for the backtrace.  I'll try and see whether I can reproduce the 
crash
on my machine. If that's not possible things will be a bit difficult :-)
--
Oliver

Am 26.11.2012 18:39, schrieb Eike Mueller:
> Hi Markus and Oliver,
>
> to get to the bottom of this I recompiled everything (UG+Dune+my code) 
> with -O0 -g, and that way I was able to get some more information out 
> of the core dump. On 1 processor it runs fine now, but when running on 
> 6, this is what I get, looks like it crashes in loadBalance(), but I 
> can't make sense of what's happening inside UG. It always seems to 
> crash inside ifcreate.c, either in line 482 or 489:
>
> Program terminated with signal 11, Segmentation fault.
> #0  0x0000000000a438b0 in UG::D3::IFCreateFromScratch (tmpcpl=0x1462ad0,
>     ifId=1) at if/ifcreate.c:489
> 489                     ifHead->nItems++;
> (gdb) backtrace
> #0  0x0000000000a438b0 in UG::D3::IFCreateFromScratch (tmpcpl=0x1462ad0,
>     ifId=1) at if/ifcreate.c:489
> #1  0x0000000000a44dae in UG::D3::IFRebuildAll () at if/ifcreate.c:1059
> #2  0x0000000000a44e71 in UG::D3::IFAllFromScratch () at 
> if/ifcreate.c:1097
> #3  0x0000000000a4bd89 in UG::D3::DDD_XferEnd () at xfer/cmds.c:869
> #4  0x0000000000a65b5c in UG::D3::TransferGridFromLevel (theMG=0x1441880,
>     level=0) at trans.c:835
> #5  0x0000000000a5df4b in UG::D3::lbs (argv=0x7fffffffa390 "0",
>     theMG=0x1441880) at lb.c:659
> #6  0x0000000000a0bd83 in UG::D3::LBCommand (argc=4, argv=0x7fffffffab90)
>     at commands.c:10658
> #7  0x00000000004a1e2d in Dune::UG_NS<3>::LBCommand (argc=4,
>     argv=0x7fffffffab90) at ../../../dune/grid/uggrid/ugwrapper.hh:979
> #8  0x00000000004a8df9 in Dune::UGGrid<3>::loadBalance (this=0x134e490,
>     strategy=0, minlevel=0, depth=2, maxLevel=32, minelement=1)
>     at uggrid.cc:556
> #9  0x00000000004077bf in Dune::UGGrid<3>::loadBalance (this=0x134e490)
>     at 
> /home/n02/n02/eike/work/Library/Dune2.2/include/dune/grid/uggrid.hh:738
> #10 0x0000000000400928 in main (argc=3, argv=0x7fffffffb5a8)
>     at testsphericalgridgenerator.cc:65
>
> but I sometimes also get:
>
> Core was generated by `./testsphericalgridgenerator 
> sphericalshell_cube_6.dgf 4'.
> Program terminated with signal 11, Segmentation fault.
> #0  0x0000000000a438b0 in UG::D3::IFCreateFromScratch (tmpcpl=0x1462ad0,
>     ifId=1) at if/ifcreate.c:482
> 482                             ifAttr->nAB    = ifAttr->nBA   = 
> ifAttr->nABA   = 0;
> (gdb) backtrace
> #0  0x0000000000a438b0 in UG::D3::IFCreateFromScratch (tmpcpl=0x1462ad0,
>     ifId=1) at if/ifcreate.c:482
> #1  0x0000000000a44dae in UG::D3::IFRebuildAll () at if/ifcreate.c:1049
> #2  0x0000000000a44e71 in UG::D3::IFRebuildAll () at if/ifcreate.c:1057
> #3  0x0000000000a4bd89 in UG::D3::DDD_XferEnd () at xfer/cmds.c:850
> #4  0x0000000000a65b5c in UG::D3::TransferGridFromLevel (theMG=0x1441880,
>     level=0) at trans.c:824
> #5  0x0000000000a5df4b in UG::D3::lbs (argv=0x7fffffffa390 "0",
>     theMG=0x1441880) at lb.c:644
> #6  0x0000000000a0bd83 in UG::D3::LBCommand (argc=4, argv=0x7fffffffab90)
>     at commands.c:10644
> #7  0x00000000004a1e2d in Dune::UG_NS<3>::LBCommand (argc=0,
>     argv=0x7fffffffa420) at ../../../dune/grid/uggrid/ugwrapper.hh:977
> #8  0x00000000004a8df9 in Dune::UGGrid<3>::loadBalance (this=0x134e490,
>     strategy=0, minlevel=0, depth=2, maxLevel=32, minelement=1)
>     at uggrid.cc:554
> #9  0x00000000004077bf in 
> std::__shared_count<(__gnu_cxx::_Lock_policy)2>::~__shared_count 
> (this=0x134e490, __in_chrg=<optimized out>)
>     at /opt/gcc/4.6.3/snos/include/g++/bits/shared_ptr_base.h:550
> #10 0x0000000000400928 in main (argc=0, argv=0x520)
>     at testsphericalgridgenerator.cc:66
>
> I've tried different load balancing strategies, but for all I get a 
> segfault.
>
> Cheers,
>
> Eike
>
>
> Markus Blatt wrote:
>> On Mon, Nov 26, 2012 at 01:57:15PM +0000, Eike Mueller wrote:
>>> thanks a lot for the patch, unfortunately I still get a segfault 
>>> when I run on HECToR.
>>>
>>
>> I feared that, but it was still worth a shot. The change probably
>> interferes with the memory allocation in ddd.
>>
>> Markus
>
>





More information about the Dune mailing list