[Dune] CMake problems with dune-grid-howto
Aleksejs Fomins
aleksejs.fomins at lspr.ch
Tue Nov 25 18:15:34 CET 2014
Dear Dune,
This time I made sure I have all the latest modules. In fact, I even
deleted them and cloned them again.
I run a full project CMake build and get an error with dune-grid-howto
-----------------------------------------------
Linking CXX executable adaptiveintegration
/home/fomins/gitwork/hades-github-lspr-ag/dune-alugrid/build-cmake/lib/libdunealugrid.a(binaryio.cc.o):
In function `ALUGrid::readBinary(std::istream&, void*, unsigned long,
ALUGrid::BinaryFormat)':
binaryio.cc:(.text+0xa4): undefined reference to `inflateInit_'
binaryio.cc:(.text+0x1a5): undefined reference to `inflate'
binaryio.cc:(.text+0x1be): undefined reference to `zError'
binaryio.cc:(.text+0x2b3): undefined reference to `inflateEnd'
/home/fomins/gitwork/hades-github-lspr-ag/dune-alugrid/build-cmake/lib/libdunealugrid.a(binaryio.cc.o):
In function `ALUGrid::writeBinary(std::ostream&, void const*, unsigned
long, ALUGrid::BinaryFormat)':
binaryio.cc:(.text+0x3ac): undefined reference to `deflateInit_'
binaryio.cc:(.text+0x464): undefined reference to `deflate'
binaryio.cc:(.text+0x47d): undefined reference to `zError'
binaryio.cc:(.text+0x53e): undefined reference to `deflateEnd'
-----------------------------------------------
The full log and the opts file are attached.
Greetings,
Aleksejs
-------------- next part --------------
#################################################################################################################
## objective - opts file for building vulcain, based on Dune, with cmake
##
## history - 2014 apr 16, created
##
## usage - time ./dune-common/bin/dunecontrol --use-cmake --opts=af.debian7.lsprag.cmakebuild.minimalistic.opts all
##
##################################################################################################################
USE_CMAKE=yes
CONFIGURE_FLAGS="--enable-parallel --enable-experimental-grid-extensions CC=mpicc CXX=mpicxx"
CMAKE_PREFIX_PATH="\
/opt/extlib/boost/1.55.0/gcc/4.9.0;\
/opt/extlib/parmetis/4.0.3/openmpi/1.8.1/gcc/4.9.0;\
/opt/extlib/metis/5.1.0/gcc/4.9.0;\
"
CMAKE_FLAGS="\
-DCXXFLAGS=\"-O2 -Wall\" \
-DCMAKE_PREFIX_PATH=\"$CMAKE_PREFIX_PATH\" \
-DDUNE_GRID_EXPERIMENTAL_GRID_EXTENSIONS:BOOL=TRUE \
"
-------------- next part --------------
----- using default flags $CONFIGURE_FLAGS from /home/fomins/gitwork/hades-github-lspr-ag/af.debian7.lsprag.cmakebuild.minimalistic.opts -----
--- going to build dune-common dune-geometry dune-grid dune-localfunctions dune-alugrid dune-curvilineargeometry dune-istl dune-grid-howto dune-curvilineargrid ---
--- calling all for dune-common ---
--- calling vcsetup for dune-common ---
--- calling autogen for dune-common ---
Skipping dune-autogen because of CMake
--- calling configure for dune-common ---
----- using default flags $CONFIGURE_FLAGS from /home/fomins/gitwork/hades-github-lspr-ag/af.debian7.lsprag.cmakebuild.minimalistic.opts -----
CXX=mpicxx CC=mpicc cmake -DCMAKE_MODULE_PATH="" -DUSE_MPI=ON -DCXXFLAGS="-O2 -Wall" -DCMAKE_PREFIX_PATH="/opt/extlib/boost/1.55.0/gcc/4.9.0;/opt/extlib/parmetis/4.0.3/openmpi/1.8.1/gcc/4.9.0;/opt/extlib/metis/5.1.0/gcc/4.9.0;" -DDUNE_GRID_EXPERIMENTAL_GRID_EXTENSIONS:BOOL=TRUE "/home/fomins/gitwork/hades-github-lspr-ag/dune-common"
-- I could not find the latex2html command.
-- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE)
-- Performing tests specific to dune-common from file /home/fomins/gitwork/hades-github-lspr-ag/dune-common/cmake/modules/DuneCommonMacros.cmake.
-- A library with BLAS API found.
-- A library with LAPACK API found.
-- Could NOT find GMP (missing: GMP_INCLUDE_DIR GMP_LIB GMPXX_LIB GMP_HEADER_WORKS GMPXX_LIB_WORKS)
-- Using scripts from /home/fomins/gitwork/hades-github-lspr-ag/dune-common/cmake/scripts for creating doxygen stuff.
-- Not adding custom target for config.h generation
--
-- The following OPTIONAL packages have been found:
* PkgConfig
* BLAS
* LAPACK
* Inkscape
* MPI
* Threads
-- The following OPTIONAL packages have not been found:
* LATEX
* UnixCommands
* Doxygen
* GMP
-- Configuring done
-- Generating done
-- Build files have been written to: /home/fomins/gitwork/hades-github-lspr-ag/dune-common/build-cmake
--- calling make for dune-common ---
build directory: build-cmake
make
[ 66%] Built target dunecommon
[ 83%] Built target indexset
[ 83%] Built target poosc08
[100%] Built target poosc08_test
--- dune-common done ---
--- calling all for dune-geometry ---
--- calling vcsetup for dune-geometry ---
--- calling autogen for dune-geometry ---
Skipping dune-autogen because of CMake
--- calling configure for dune-geometry ---
----- using default flags $CONFIGURE_FLAGS from /home/fomins/gitwork/hades-github-lspr-ag/af.debian7.lsprag.cmakebuild.minimalistic.opts -----
/home/fomins/gitwork/hades-github-lspr-ag/dune-geometry/lib/dunegeometryam2cmake.lib for converting options does not exist
CXX=mpicxx CC=mpicc cmake -DCMAKE_MODULE_PATH="" -DUSE_MPI=ON "-Ddune-common_DIR=/home/fomins/gitwork/hades-github-lspr-ag/dune-common/build-cmake" -DCXXFLAGS="-O2 -Wall" -DCMAKE_PREFIX_PATH="/opt/extlib/boost/1.55.0/gcc/4.9.0;/opt/extlib/parmetis/4.0.3/openmpi/1.8.1/gcc/4.9.0;/opt/extlib/metis/5.1.0/gcc/4.9.0;" -DDUNE_GRID_EXPERIMENTAL_GRID_EXTENSIONS:BOOL=TRUE "/home/fomins/gitwork/hades-github-lspr-ag/dune-geometry"
-- Dependencies for dune-geometry: dune-common (>= 2.4)
-- I could not find the latex2html command.
-- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE)
-- Performing tests specific to dune-common from file /home/fomins/gitwork/hades-github-lspr-ag/dune-common/cmake/modules/DuneCommonMacros.cmake.
-- A library with BLAS API found.
-- A library with LAPACK API found.
-- Could NOT find GMP (missing: GMP_INCLUDE_DIR GMP_LIB GMPXX_LIB GMP_HEADER_WORKS GMPXX_LIB_WORKS)
-- Setting dune-common_INCLUDE_DIRS=/home/fomins/gitwork/hades-github-lspr-ag/dune-common
-- Setting dune-common_LIBRARIES=dunecommon
-- Using scripts from /home/fomins/gitwork/hades-github-lspr-ag/dune-common/cmake/scripts for creating doxygen stuff.
-- Adding custom target for config.h generation
--
-- The following OPTIONAL packages have been found:
* MPI
* PkgConfig
* BLAS
* Threads
* LAPACK
* Inkscape
-- The following REQUIRED packages have been found:
* dune-common
-- The following OPTIONAL packages have not been found:
* LATEX
* UnixCommands
* Doxygen
* GMP
-- Configuring done
-- Generating done
-- Build files have been written to: /home/fomins/gitwork/hades-github-lspr-ag/dune-geometry/build-cmake
--- calling make for dune-geometry ---
build directory: build-cmake
make
[100%] Built target dunegeometry
--- dune-geometry done ---
--- calling all for dune-grid ---
--- calling vcsetup for dune-grid ---
--- calling autogen for dune-grid ---
Skipping dune-autogen because of CMake
--- calling configure for dune-grid ---
----- using default flags $CONFIGURE_FLAGS from /home/fomins/gitwork/hades-github-lspr-ag/af.debian7.lsprag.cmakebuild.minimalistic.opts -----
/home/fomins/gitwork/hades-github-lspr-ag/dune-geometry/lib/dunegeometryam2cmake.lib for converting options does not exist
CXX=mpicxx CC=mpicc cmake -DCMAKE_MODULE_PATH="" -DUSE_MPI=ON "-Ddune-common_DIR=/home/fomins/gitwork/hades-github-lspr-ag/dune-common/build-cmake" "-Ddune-geometry_DIR=/home/fomins/gitwork/hades-github-lspr-ag/dune-geometry/build-cmake" -DENABLE_EXPERIMENTAL_GRID_EXTENSIONS:BOOL=TRUE -DCXXFLAGS="-O2 -Wall" -DCMAKE_PREFIX_PATH="/opt/extlib/boost/1.55.0/gcc/4.9.0;/opt/extlib/parmetis/4.0.3/openmpi/1.8.1/gcc/4.9.0;/opt/extlib/metis/5.1.0/gcc/4.9.0;" -DDUNE_GRID_EXPERIMENTAL_GRID_EXTENSIONS:BOOL=TRUE "/home/fomins/gitwork/hades-github-lspr-ag/dune-grid"
-- Dependencies for dune-grid: dune-common (>= 2.4);dune-geometry (>= 2.4)
-- Dependencies for dune-geometry: dune-common (>= 2.4)
-- I could not find the latex2html command.
-- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE)
-- Performing tests specific to dune-common from file /home/fomins/gitwork/hades-github-lspr-ag/dune-common/cmake/modules/DuneCommonMacros.cmake.
-- A library with BLAS API found.
-- A library with LAPACK API found.
-- Could NOT find GMP (missing: GMP_INCLUDE_DIR GMP_LIB GMPXX_LIB GMP_HEADER_WORKS GMPXX_LIB_WORKS)
-- Setting dune-common_INCLUDE_DIRS=/home/fomins/gitwork/hades-github-lspr-ag/dune-common
-- Setting dune-common_LIBRARIES=dunecommon
-- Setting dune-geometry_INCLUDE_DIRS=/home/fomins/gitwork/hades-github-lspr-ag/dune-geometry
-- Setting dune-geometry_LIBRARIES=dunegeometry
-- Performing tests specific to dune-grid from file /home/fomins/gitwork/hades-github-lspr-ag/dune-grid/cmake/modules/DuneGridMacros.cmake.
-- checking for module 'alugrid'
-- package 'alugrid' not found
-- checking for module 'alugrid'
-- package 'alugrid' not found
-- Could NOT find ALUGrid (missing: ALUGRID_VERSION ALUGRID_INCLUDE_PATH ALUGRID_LIB ALUGRID_LIB_PATH ALULIB_FUNCTIONAL HAVE_ALUGRID_SERIAL_H)
CMake Warning at cmake/modules/UseUG.cmake:27 (find_package):
Could not find a package configuration file provided by "UG" (requested
version 3.11.0) with any of the following names:
UGConfig.cmake
ug-config.cmake
Add the installation prefix of "UG" to CMAKE_PREFIX_PATH or set "UG_DIR" to
a directory containing one of the above files. If "UG" provides a separate
development package or SDK, be sure it has been installed.
Call Stack (most recent call first):
cmake/modules/DuneGridMacros.cmake:11 (include)
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/cmake/modules/DuneMacros.cmake:505 (include)
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/cmake/modules/DuneMacros.cmake:634 (dune_process_dependency_macros)
CMakeLists.txt:22 (dune_project)
-- Could NOT find UG (missing: UG_DIR HAVE_UG)
-- Could NOT find Grape (missing: GRAPE_INCLUDE_DIR GRAPE_LIBRARY _GRAPE_LIB_FUNCTIONAL _GRAPE_HEADER_USABLE)
-- checking for one of the modules 'psurface'
-- checking for module 'psurface'
-- package 'psurface' not found
-- Could NOT find psurface (missing: PSURFACE_INCLUDE_DIR PSURFACE_LIBRARY)
-- Could NOT find AmiraMesh (missing: AMIRAMESH_INCLUDE_DIR AMIRAMESH_LIBRARY)
-- Using scripts from /home/fomins/gitwork/hades-github-lspr-ag/dune-common/cmake/scripts for creating doxygen stuff.
-- Adding custom target for config.h generation
--
-- The following features have been enabled:
* Experimental grid extensions , Enables additional grid features.
-- The following OPTIONAL packages have been found:
* MPI
* PkgConfig
* BLAS
* Threads
* LAPACK
* Inkscape
* X11
* OpenGL
-- The following REQUIRED packages have been found:
* dune-common
* dune-geometry
-- The following OPTIONAL packages have not been found:
* LATEX
* UnixCommands
* Doxygen
* GMP
* ALUGrid
* Alberta
* UG (required version >= 3.11.0)
* Grape
* Psurface
* AmiraMesh
-- Configuring done
-- Generating done
-- Build files have been written to: /home/fomins/gitwork/hades-github-lspr-ag/dune-grid/build-cmake
--- calling make for dune-grid ---
build directory: build-cmake
make
[100%] Built target dunegrid
--- dune-grid done ---
--- calling all for dune-localfunctions ---
--- calling vcsetup for dune-localfunctions ---
--- calling autogen for dune-localfunctions ---
Skipping dune-autogen because of CMake
--- calling configure for dune-localfunctions ---
----- using default flags $CONFIGURE_FLAGS from /home/fomins/gitwork/hades-github-lspr-ag/af.debian7.lsprag.cmakebuild.minimalistic.opts -----
/home/fomins/gitwork/hades-github-lspr-ag/dune-geometry/lib/dunegeometryam2cmake.lib for converting options does not exist
/home/fomins/gitwork/hades-github-lspr-ag/dune-localfunctions/lib/dunelocalfunctionsam2cmake.lib for converting options does not exist
CXX=mpicxx CC=mpicc cmake -DCMAKE_MODULE_PATH="" -DUSE_MPI=ON "-Ddune-common_DIR=/home/fomins/gitwork/hades-github-lspr-ag/dune-common/build-cmake" "-Ddune-geometry_DIR=/home/fomins/gitwork/hades-github-lspr-ag/dune-geometry/build-cmake" -DCXXFLAGS="-O2 -Wall" -DCMAKE_PREFIX_PATH="/opt/extlib/boost/1.55.0/gcc/4.9.0;/opt/extlib/parmetis/4.0.3/openmpi/1.8.1/gcc/4.9.0;/opt/extlib/metis/5.1.0/gcc/4.9.0;" -DDUNE_GRID_EXPERIMENTAL_GRID_EXTENSIONS:BOOL=TRUE "/home/fomins/gitwork/hades-github-lspr-ag/dune-localfunctions"
-- Dependencies for dune-localfunctions: dune-geometry (>= 2.4)
-- Dependencies for dune-geometry: dune-common (>= 2.4)
-- I could not find the latex2html command.
-- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE)
-- Performing tests specific to dune-common from file /home/fomins/gitwork/hades-github-lspr-ag/dune-common/cmake/modules/DuneCommonMacros.cmake.
-- A library with BLAS API found.
-- A library with LAPACK API found.
-- Could NOT find GMP (missing: GMP_INCLUDE_DIR GMP_LIB GMPXX_LIB GMP_HEADER_WORKS GMPXX_LIB_WORKS)
-- Setting dune-common_INCLUDE_DIRS=/home/fomins/gitwork/hades-github-lspr-ag/dune-common
-- Setting dune-common_LIBRARIES=dunecommon
-- Setting dune-geometry_INCLUDE_DIRS=/home/fomins/gitwork/hades-github-lspr-ag/dune-geometry
-- Setting dune-geometry_LIBRARIES=dunegeometry
-- Performing tests specific to dune-localfunctions from file /home/fomins/gitwork/hades-github-lspr-ag/dune-localfunctions/cmake/modules/DuneLocalfunctionsMacros.cmake.
-- Using scripts from /home/fomins/gitwork/hades-github-lspr-ag/dune-common/cmake/scripts for creating doxygen stuff.
-- Adding custom target for config.h generation
--
-- The following OPTIONAL packages have been found:
* MPI
* PkgConfig
* BLAS
* Threads
* LAPACK
* Inkscape
-- The following REQUIRED packages have been found:
* dune-common
* dune-geometry
-- The following OPTIONAL packages have not been found:
* LATEX
* UnixCommands
* Doxygen
* GMP
-- Configuring done
-- Generating done
-- Build files have been written to: /home/fomins/gitwork/hades-github-lspr-ag/dune-localfunctions/build-cmake
--- calling make for dune-localfunctions ---
build directory: build-cmake
make
--- dune-localfunctions done ---
--- calling all for dune-alugrid ---
--- calling vcsetup for dune-alugrid ---
--- calling autogen for dune-alugrid ---
Skipping dune-autogen because of CMake
--- calling configure for dune-alugrid ---
----- using default flags $CONFIGURE_FLAGS from /home/fomins/gitwork/hades-github-lspr-ag/af.debian7.lsprag.cmakebuild.minimalistic.opts -----
/home/fomins/gitwork/hades-github-lspr-ag/dune-geometry/lib/dunegeometryam2cmake.lib for converting options does not exist
CXX=mpicxx CC=mpicc cmake -DCMAKE_MODULE_PATH="" -DUSE_MPI=ON "-Ddune-common_DIR=/home/fomins/gitwork/hades-github-lspr-ag/dune-common/build-cmake" "-Ddune-geometry_DIR=/home/fomins/gitwork/hades-github-lspr-ag/dune-geometry/build-cmake" -DENABLE_EXPERIMENTAL_GRID_EXTENSIONS:BOOL=TRUE "-Ddune-grid_DIR=/home/fomins/gitwork/hades-github-lspr-ag/dune-grid/build-cmake" -DCXXFLAGS="-O2 -Wall" -DCMAKE_PREFIX_PATH="/opt/extlib/boost/1.55.0/gcc/4.9.0;/opt/extlib/parmetis/4.0.3/openmpi/1.8.1/gcc/4.9.0;/opt/extlib/metis/5.1.0/gcc/4.9.0;" -DDUNE_GRID_EXPERIMENTAL_GRID_EXTENSIONS:BOOL=TRUE "/home/fomins/gitwork/hades-github-lspr-ag/dune-alugrid"
-- Dependencies for dune-alugrid: dune-grid (>= 2.3)
-- Dependencies for dune-grid: dune-common (>= 2.4);dune-geometry (>= 2.4)
-- Dependencies for dune-geometry: dune-common (>= 2.4)
-- I could not find the latex2html command.
-- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE)
-- Performing tests specific to dune-common from file /home/fomins/gitwork/hades-github-lspr-ag/dune-common/cmake/modules/DuneCommonMacros.cmake.
-- A library with BLAS API found.
-- A library with LAPACK API found.
-- Could NOT find GMP (missing: GMP_INCLUDE_DIR GMP_LIB GMPXX_LIB GMP_HEADER_WORKS GMPXX_LIB_WORKS)
-- Setting dune-common_INCLUDE_DIRS=/home/fomins/gitwork/hades-github-lspr-ag/dune-common
-- Setting dune-common_LIBRARIES=dunecommon
-- Setting dune-geometry_INCLUDE_DIRS=/home/fomins/gitwork/hades-github-lspr-ag/dune-geometry
-- Setting dune-geometry_LIBRARIES=dunegeometry
-- Performing tests specific to dune-grid from file /home/fomins/gitwork/hades-github-lspr-ag/dune-grid/cmake/modules/DuneGridMacros.cmake.
-- checking for module 'alugrid'
-- package 'alugrid' not found
-- checking for module 'alugrid'
-- package 'alugrid' not found
-- Could NOT find ALUGrid (missing: ALUGRID_VERSION ALUGRID_INCLUDE_PATH ALUGRID_LIB ALUGRID_LIB_PATH ALULIB_FUNCTIONAL HAVE_ALUGRID_SERIAL_H)
CMake Warning at /home/fomins/gitwork/hades-github-lspr-ag/dune-grid/cmake/modules/UseUG.cmake:27 (find_package):
Could not find a package configuration file provided by "UG" (requested
version 3.11.0) with any of the following names:
UGConfig.cmake
ug-config.cmake
Add the installation prefix of "UG" to CMAKE_PREFIX_PATH or set "UG_DIR" to
a directory containing one of the above files. If "UG" provides a separate
development package or SDK, be sure it has been installed.
Call Stack (most recent call first):
/home/fomins/gitwork/hades-github-lspr-ag/dune-grid/cmake/modules/DuneGridMacros.cmake:11 (include)
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/cmake/modules/DuneMacros.cmake:505 (include)
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/cmake/modules/DuneMacros.cmake:634 (dune_process_dependency_macros)
CMakeLists.txt:26 (dune_project)
-- Could NOT find UG (missing: UG_DIR HAVE_UG)
-- Could NOT find Grape (missing: GRAPE_INCLUDE_DIR GRAPE_LIBRARY _GRAPE_LIB_FUNCTIONAL _GRAPE_HEADER_USABLE)
-- checking for one of the modules 'psurface'
-- checking for module 'psurface'
-- package 'psurface' not found
-- Could NOT find psurface (missing: PSURFACE_INCLUDE_DIR PSURFACE_LIBRARY)
-- Could NOT find AmiraMesh (missing: AMIRAMESH_INCLUDE_DIR AMIRAMESH_LIBRARY)
-- Setting dune-grid_INCLUDE_DIRS=/home/fomins/gitwork/hades-github-lspr-ag/dune-grid
-- Setting dune-grid_LIBRARIES=dunegrid
-- Performing tests specific to dune-alugrid from file /home/fomins/gitwork/hades-github-lspr-ag/dune-alugrid/cmake/modules/DuneAlugridMacros.cmake.
-- Could NOT find SIONlib (missing: SIONLIB_INCLUDE_DIR SIONLIB_LIBRARY SIONLIB_HEADER_USABLE SIONLIB_LIB_WORKS SIONLIB_LIB_SIONSER_WORKS)
-- Could NOT find DLMalloc (missing: DLMALLOC_INCLUDE_DIR DLMALLOC_SOURCE_USABLE)
Zoltan Dir: ZOLTAN_INCLUDE_DIR-NOTFOUND
-- Could NOT find ZOLTAN (missing: ZOLTAN_INCLUDE_DIR ZOLTAN_LIBRARY ZOLTAN_HEADER_USABLE)
CMake Warning (dev) at cmake/modules/DuneAlugridMacros.cmake:49 (message):
TODO: Improve module test.
Call Stack (most recent call first):
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/cmake/modules/DuneMacros.cmake:505 (include)
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/cmake/modules/DuneMacros.cmake:634 (dune_process_dependency_macros)
CMakeLists.txt:26 (dune_project)
This warning is for project developers. Use -Wno-dev to suppress it.
-- Adding custom target for config.h generation
--
-- The following features have been enabled:
* Experimental grid extensions , Enables additional grid features.
-- The following OPTIONAL packages have been found:
* MPI
* PkgConfig
* BLAS
* Threads
* LAPACK
* Inkscape
* X11
* OpenGL
* ZLIB
-- The following REQUIRED packages have been found:
* dune-common
* dune-grid
* dune-geometry
-- The following OPTIONAL packages have not been found:
* LATEX
* UnixCommands
* Doxygen
* GMP
* ALUGrid
* Alberta
* UG (required version >= 3.11.0)
* Grape
* Psurface
* AmiraMesh
* SIONlib
* DLMalloc
* ZOLTAN
-- Configuring done
-- Generating done
-- Build files have been written to: /home/fomins/gitwork/hades-github-lspr-ag/dune-alugrid/build-cmake
--- calling make for dune-alugrid ---
build directory: build-cmake
make
[100%] Built target dunealugrid
--- dune-alugrid done ---
--- calling all for dune-curvilineargeometry ---
--- calling vcsetup for dune-curvilineargeometry ---
--- calling autogen for dune-curvilineargeometry ---
Skipping dune-autogen because of CMake
--- calling configure for dune-curvilineargeometry ---
----- using default flags $CONFIGURE_FLAGS from /home/fomins/gitwork/hades-github-lspr-ag/af.debian7.lsprag.cmakebuild.minimalistic.opts -----
/home/fomins/gitwork/hades-github-lspr-ag/dune-geometry/lib/dunegeometryam2cmake.lib for converting options does not exist
/home/fomins/gitwork/hades-github-lspr-ag/dune-curvilineargeometry/lib/dunecurvilineargeometryam2cmake.lib for converting options does not exist
CXX=mpicxx CC=mpicc cmake -DCMAKE_MODULE_PATH="" -DUSE_MPI=ON "-Ddune-common_DIR=/home/fomins/gitwork/hades-github-lspr-ag/dune-common/build-cmake" "-Ddune-geometry_DIR=/home/fomins/gitwork/hades-github-lspr-ag/dune-geometry/build-cmake" -DCXXFLAGS="-O2 -Wall" -DCMAKE_PREFIX_PATH="/opt/extlib/boost/1.55.0/gcc/4.9.0;/opt/extlib/parmetis/4.0.3/openmpi/1.8.1/gcc/4.9.0;/opt/extlib/metis/5.1.0/gcc/4.9.0;" -DDUNE_GRID_EXPERIMENTAL_GRID_EXTENSIONS:BOOL=TRUE "/home/fomins/gitwork/hades-github-lspr-ag/dune-curvilineargeometry"
-- Dependencies for dune-curvilineargeometry: dune-common;dune-geometry
-- Dependencies for dune-geometry: dune-common (>= 2.4)
-- I could not find the latex2html command.
-- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE)
-- Performing tests specific to dune-common from file /home/fomins/gitwork/hades-github-lspr-ag/dune-common/cmake/modules/DuneCommonMacros.cmake.
-- A library with BLAS API found.
-- A library with LAPACK API found.
-- Could NOT find GMP (missing: GMP_INCLUDE_DIR GMP_LIB GMPXX_LIB GMP_HEADER_WORKS GMPXX_LIB_WORKS)
-- Setting dune-common_INCLUDE_DIRS=/home/fomins/gitwork/hades-github-lspr-ag/dune-common
-- Setting dune-common_LIBRARIES=dunecommon
-- Setting dune-geometry_INCLUDE_DIRS=/home/fomins/gitwork/hades-github-lspr-ag/dune-geometry
-- Setting dune-geometry_LIBRARIES=dunegeometry
-- Performing tests specific to dune-curvilineargeometry from file /home/fomins/gitwork/hades-github-lspr-ag/dune-curvilineargeometry/cmake/modules/DuneCurvilineargeometryMacros.cmake.
-- Using scripts from /home/fomins/gitwork/hades-github-lspr-ag/dune-common/cmake/scripts for creating doxygen stuff.
-- Adding custom target for config.h generation
--
-- The following OPTIONAL packages have been found:
* MPI
* PkgConfig
* BLAS
* Threads
* LAPACK
* Inkscape
-- The following REQUIRED packages have been found:
* dune-common
* dune-geometry
-- The following OPTIONAL packages have not been found:
* LATEX
* UnixCommands
* Doxygen
* GMP
-- Configuring done
-- Generating done
-- Build files have been written to: /home/fomins/gitwork/hades-github-lspr-ag/dune-curvilineargeometry/build-cmake
--- calling make for dune-curvilineargeometry ---
build directory: build-cmake
make
[ 20%] Built target dune_curvilineargeometry
[ 40%] Built target test_curvilinearelementinterpolation
[ 60%] Built target test_curvilineargeometry
[ 80%] Built target test_polynomial
[100%] Built target test_recursiveinterpolationintegration
--- dune-curvilineargeometry done ---
--- calling all for dune-istl ---
--- calling vcsetup for dune-istl ---
--- calling autogen for dune-istl ---
Skipping dune-autogen because of CMake
--- calling configure for dune-istl ---
----- using default flags $CONFIGURE_FLAGS from /home/fomins/gitwork/hades-github-lspr-ag/af.debian7.lsprag.cmakebuild.minimalistic.opts -----
CXX=mpicxx CC=mpicc cmake -DCMAKE_MODULE_PATH="" -DUSE_MPI=ON "-Ddune-common_DIR=/home/fomins/gitwork/hades-github-lspr-ag/dune-common/build-cmake" -DCXXFLAGS="-O2 -Wall" -DCMAKE_PREFIX_PATH="/opt/extlib/boost/1.55.0/gcc/4.9.0;/opt/extlib/parmetis/4.0.3/openmpi/1.8.1/gcc/4.9.0;/opt/extlib/metis/5.1.0/gcc/4.9.0;" -DDUNE_GRID_EXPERIMENTAL_GRID_EXTENSIONS:BOOL=TRUE "/home/fomins/gitwork/hades-github-lspr-ag/dune-istl"
-- Dependencies for dune-istl: dune-common (>= 2.4)
-- I could not find the latex2html command.
-- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE)
-- Performing tests specific to dune-common from file /home/fomins/gitwork/hades-github-lspr-ag/dune-common/cmake/modules/DuneCommonMacros.cmake.
-- A library with BLAS API found.
-- A library with LAPACK API found.
-- Could NOT find GMP (missing: GMP_INCLUDE_DIR GMP_LIB GMPXX_LIB GMP_HEADER_WORKS GMPXX_LIB_WORKS)
-- Setting dune-common_INCLUDE_DIRS=/home/fomins/gitwork/hades-github-lspr-ag/dune-common
-- Setting dune-common_LIBRARIES=dunecommon
-- Performing tests specific to dune-istl from file /home/fomins/gitwork/hades-github-lspr-ag/dune-istl/cmake/modules/DuneIstlMacros.cmake.
-- Boost version: 1.55.0
-- Boost version: 1.55.0
-- Skipping check for Boost::FUSION as Boost is not available.
-- Could NOT find SuperLU (missing: SUPERLU_INCLUDE_DIR SUPERLU_LIBRARY)
-- Using scripts from /home/fomins/gitwork/hades-github-lspr-ag/dune-common/cmake/scripts for creating doxygen stuff.
-- Adding custom target for config.h generation
--
-- The following OPTIONAL packages have been found:
* PkgConfig
* LAPACK
* Inkscape
* Boost
* METIS
* ParMETIS
* UMFPack
* MPI
* Threads
-- The following REQUIRED packages have been found:
* dune-common
* BLAS
-- The following OPTIONAL packages have not been found:
* LATEX
* UnixCommands
* Doxygen
* GMP
* BoostFusion
* SuperLU
-- Configuring done
-- Generating done
-- Build files have been written to: /home/fomins/gitwork/hades-github-lspr-ag/dune-istl/build-cmake
--- calling make for dune-istl ---
build directory: build-cmake
make
[100%] Built target example
--- dune-istl done ---
--- calling all for dune-grid-howto ---
--- calling vcsetup for dune-grid-howto ---
--- calling autogen for dune-grid-howto ---
Skipping dune-autogen because of CMake
--- calling configure for dune-grid-howto ---
----- using default flags $CONFIGURE_FLAGS from /home/fomins/gitwork/hades-github-lspr-ag/af.debian7.lsprag.cmakebuild.minimalistic.opts -----
/home/fomins/gitwork/hades-github-lspr-ag/dune-geometry/lib/dunegeometryam2cmake.lib for converting options does not exist
/home/fomins/gitwork/hades-github-lspr-ag/dune-grid-howto/lib/dunegridhowtoam2cmake.lib for converting options does not exist
CXX=mpicxx CC=mpicc cmake -DCMAKE_MODULE_PATH="" -DUSE_MPI=ON "-Ddune-common_DIR=/home/fomins/gitwork/hades-github-lspr-ag/dune-common/build-cmake" "-Ddune-geometry_DIR=/home/fomins/gitwork/hades-github-lspr-ag/dune-geometry/build-cmake" -DENABLE_EXPERIMENTAL_GRID_EXTENSIONS:BOOL=TRUE "-Ddune-grid_DIR=/home/fomins/gitwork/hades-github-lspr-ag/dune-grid/build-cmake" "-Ddune-istl_DIR=/home/fomins/gitwork/hades-github-lspr-ag/dune-istl/build-cmake" "-Ddune-alugrid_DIR=/home/fomins/gitwork/hades-github-lspr-ag/dune-alugrid/build-cmake" -DCXXFLAGS="-O2 -Wall" -DCMAKE_PREFIX_PATH="/opt/extlib/boost/1.55.0/gcc/4.9.0;/opt/extlib/parmetis/4.0.3/openmpi/1.8.1/gcc/4.9.0;/opt/extlib/metis/5.1.0/gcc/4.9.0;" -DDUNE_GRID_EXPERIMENTAL_GRID_EXTENSIONS:BOOL=TRUE "/home/fomins/gitwork/hades-github-lspr-ag/dune-grid-howto"
-- Dependencies for dune-grid-howto: dune-grid (>= 2.4)
-- Suggestions for dune-grid-howto: dune-istl (>= 2.4);dune-alugrid
-- Dependencies for dune-grid: dune-common (>= 2.4);dune-geometry (>= 2.4)
-- Dependencies for dune-istl: dune-common (>= 2.4)
-- Dependencies for dune-alugrid: dune-grid (>= 2.3)
-- Dependencies for dune-geometry: dune-common (>= 2.4)
-- Dependencies for dune-grid: dune-common (>= 2.4);dune-geometry (>= 2.4)
-- Dependencies for dune-geometry: dune-common (>= 2.4)
-- I could not find the latex2html command.
-- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE)
-- Performing tests specific to dune-common from file /home/fomins/gitwork/hades-github-lspr-ag/dune-common/cmake/modules/DuneCommonMacros.cmake.
-- A library with BLAS API found.
-- A library with LAPACK API found.
-- Could NOT find GMP (missing: GMP_INCLUDE_DIR GMP_LIB GMPXX_LIB GMP_HEADER_WORKS GMPXX_LIB_WORKS)
-- Setting dune-common_INCLUDE_DIRS=/home/fomins/gitwork/hades-github-lspr-ag/dune-common
-- Setting dune-common_LIBRARIES=dunecommon
-- Setting dune-geometry_INCLUDE_DIRS=/home/fomins/gitwork/hades-github-lspr-ag/dune-geometry
-- Setting dune-geometry_LIBRARIES=dunegeometry
-- Performing tests specific to dune-grid from file /home/fomins/gitwork/hades-github-lspr-ag/dune-grid/cmake/modules/DuneGridMacros.cmake.
-- checking for module 'alugrid'
-- package 'alugrid' not found
-- checking for module 'alugrid'
-- package 'alugrid' not found
-- Could NOT find ALUGrid (missing: ALUGRID_VERSION ALUGRID_INCLUDE_PATH ALUGRID_LIB ALUGRID_LIB_PATH ALULIB_FUNCTIONAL HAVE_ALUGRID_SERIAL_H)
CMake Warning at /home/fomins/gitwork/hades-github-lspr-ag/dune-grid/cmake/modules/UseUG.cmake:27 (find_package):
Could not find a package configuration file provided by "UG" (requested
version 3.11.0) with any of the following names:
UGConfig.cmake
ug-config.cmake
Add the installation prefix of "UG" to CMAKE_PREFIX_PATH or set "UG_DIR" to
a directory containing one of the above files. If "UG" provides a separate
development package or SDK, be sure it has been installed.
Call Stack (most recent call first):
/home/fomins/gitwork/hades-github-lspr-ag/dune-grid/cmake/modules/DuneGridMacros.cmake:11 (include)
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/cmake/modules/DuneMacros.cmake:505 (include)
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/cmake/modules/DuneMacros.cmake:634 (dune_process_dependency_macros)
CMakeLists.txt:26 (dune_project)
-- Could NOT find UG (missing: UG_DIR HAVE_UG)
-- Could NOT find Grape (missing: GRAPE_INCLUDE_DIR GRAPE_LIBRARY _GRAPE_LIB_FUNCTIONAL _GRAPE_HEADER_USABLE)
-- checking for one of the modules 'psurface'
-- checking for module 'psurface'
-- package 'psurface' not found
-- Could NOT find psurface (missing: PSURFACE_INCLUDE_DIR PSURFACE_LIBRARY)
-- Could NOT find AmiraMesh (missing: AMIRAMESH_INCLUDE_DIR AMIRAMESH_LIBRARY)
-- Setting dune-grid_INCLUDE_DIRS=/home/fomins/gitwork/hades-github-lspr-ag/dune-grid
-- Setting dune-grid_LIBRARIES=dunegrid
-- Performing tests specific to dune-alugrid from file /home/fomins/gitwork/hades-github-lspr-ag/dune-alugrid/cmake/modules/DuneAlugridMacros.cmake.
-- Could NOT find SIONlib (missing: SIONLIB_INCLUDE_DIR SIONLIB_LIBRARY SIONLIB_HEADER_USABLE SIONLIB_LIB_WORKS SIONLIB_LIB_SIONSER_WORKS)
-- Could NOT find DLMalloc (missing: DLMALLOC_INCLUDE_DIR DLMALLOC_SOURCE_USABLE)
Zoltan Dir: ZOLTAN_INCLUDE_DIR-NOTFOUND
-- Could NOT find ZOLTAN (missing: ZOLTAN_INCLUDE_DIR ZOLTAN_LIBRARY ZOLTAN_HEADER_USABLE)
CMake Warning (dev) at /home/fomins/gitwork/hades-github-lspr-ag/dune-alugrid/cmake/modules/DuneAlugridMacros.cmake:49 (message):
TODO: Improve module test.
Call Stack (most recent call first):
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/cmake/modules/DuneMacros.cmake:505 (include)
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/cmake/modules/DuneMacros.cmake:634 (dune_process_dependency_macros)
CMakeLists.txt:26 (dune_project)
This warning is for project developers. Use -Wno-dev to suppress it.
-- Setting dune-alugrid_INCLUDE_DIRS=/home/fomins/gitwork/hades-github-lspr-ag/dune-alugrid
-- Setting dune-alugrid_LIBRARIES=dunealugrid
-- Performing tests specific to dune-istl from file /home/fomins/gitwork/hades-github-lspr-ag/dune-istl/cmake/modules/DuneIstlMacros.cmake.
-- Boost version: 1.55.0
-- Boost version: 1.55.0
-- Skipping check for Boost::FUSION as Boost is not available.
-- Could NOT find SuperLU (missing: SUPERLU_INCLUDE_DIR SUPERLU_LIBRARY)
-- Setting dune-istl_INCLUDE_DIRS=/home/fomins/gitwork/hades-github-lspr-ag/dune-istl
Could not find input file /home/fomins/gitwork/hades-github-lspr-ag/dune-grid-howto/doc/../unitcube_sgrid.hh
CMake Warning at /home/fomins/gitwork/hades-github-lspr-ag/dune-common/cmake/modules/UseLATEX.cmake:911 (MESSAGE):
Could not find file
/home/fomins/gitwork/hades-github-lspr-ag/dune-grid-howto/doc/EPS/islocalref.eps.
Are you sure you gave relative paths to IMAGES?
Call Stack (most recent call first):
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/cmake/modules/UseLATEX.cmake:1083 (LATEX_PROCESS_IMAGES)
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/cmake/modules/UseLATEX.cmake:1382 (ADD_LATEX_TARGETS_INTERNAL)
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/cmake/modules/DuneDoc.cmake:89 (add_latex_document)
doc/CMakeLists.txt:87 (dune_add_latex_document)
-- Adding custom target for config.h generation
--
-- The following features have been enabled:
* Experimental grid extensions , Enables additional grid features.
-- The following OPTIONAL packages have been found:
* MPI
* PkgConfig
* LAPACK
* Inkscape
* X11
* OpenGL
* ZLIB
* Boost
* METIS
* ParMETIS
* Threads
* UMFPack
-- The following RECOMMENDED packages have been found:
* dune-istl
* dune-alugrid
-- The following REQUIRED packages have been found:
* dune-common
* dune-grid
* dune-geometry
* BLAS
-- The following OPTIONAL packages have not been found:
* LATEX
* UnixCommands
* Doxygen
* GMP
* ALUGrid
* Alberta
* UG (required version >= 3.11.0)
* Grape
* Psurface
* AmiraMesh
* SIONlib
* DLMalloc
* ZOLTAN
* BoostFusion
* SuperLU
-- Configuring done
-- Generating done
-- Build files have been written to: /home/fomins/gitwork/hades-github-lspr-ag/dune-grid-howto/build-cmake
--- calling make for dune-grid-howto ---
build directory: build-cmake
make
[ 0%] Built target adaptivefinitevolume
Linking CXX executable adaptiveintegration
/home/fomins/gitwork/hades-github-lspr-ag/dune-alugrid/build-cmake/lib/libdunealugrid.a(binaryio.cc.o): In function `ALUGrid::readBinary(std::istream&, void*, unsigned long, ALUGrid::BinaryFormat)':
binaryio.cc:(.text+0xa4): undefined reference to `inflateInit_'
binaryio.cc:(.text+0x1a5): undefined reference to `inflate'
binaryio.cc:(.text+0x1be): undefined reference to `zError'
binaryio.cc:(.text+0x2b3): undefined reference to `inflateEnd'
/home/fomins/gitwork/hades-github-lspr-ag/dune-alugrid/build-cmake/lib/libdunealugrid.a(binaryio.cc.o): In function `ALUGrid::writeBinary(std::ostream&, void const*, unsigned long, ALUGrid::BinaryFormat)':
binaryio.cc:(.text+0x3ac): undefined reference to `deflateInit_'
binaryio.cc:(.text+0x464): undefined reference to `deflate'
binaryio.cc:(.text+0x47d): undefined reference to `zError'
binaryio.cc:(.text+0x53e): undefined reference to `deflateEnd'
collect2: error: ld returned 1 exit status
make[2]: *** [adaptiveintegration] Error 1
make[1]: *** [CMakeFiles/adaptiveintegration.dir/all] Error 2
make: *** [all] Error 2
--- Failed to build dune-grid-howto ---
Terminating dunecontrol due to previous errors!
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