[Dune] Problem linking parmetis with cmake
Aleksejs Fomins
aleksejs.fomins at lspr.ch
Wed Nov 26 15:37:33 CET 2014
Dear Marcus,
I think this is the case. When I read the output of dunecontrol, or make
VERBOSE=1, there is no mention of metis or parmetis anywhere except of
the CMAKE_PREFIX_PATH. It is as if they are not even searched for.
I attach the dunecontrol output as you requested earlier. Please tell me
if any other log is of use...
I will in the meantime try to compile the whole thing without
dune-curvilineargrid and see if dune-istl gets compiled
Best,
Aleksejs
On 11/26/2014 03:27 PM, Markus Blatt wrote:
> I have the strong suspicion that ParMetis is never searched for.
> You are using dune-alugrid and dune-grid with its dependencies.
> dune-alugrid should search for ParMETIS, but it seems like with CMake
> it never does.
>
> Markus
>
>
>
> _______________________________________________
> Dune mailing list
> Dune at dune-project.org
> http://lists.dune-project.org/mailman/listinfo/dune
>
-------------- next part --------------
----- using default flags $CONFIGURE_FLAGS from /home/fomins/gitwork/hades-github-lspr-ag/af.debian7.lsprag.cmakebuild.minimalistic.opts -----
--- going to build dune-common dune-geometry dune-grid dune-localfunctions dune-alugrid dune-curvilineargeometry dune-istl dune-curvilineargrid ---
--- calling all for dune-common ---
--- calling vcsetup for dune-common ---
--- calling autogen for dune-common ---
Skipping dune-autogen because of CMake
--- calling configure for dune-common ---
----- using default flags $CONFIGURE_FLAGS from /home/fomins/gitwork/hades-github-lspr-ag/af.debian7.lsprag.cmakebuild.minimalistic.opts -----
CXX=mpicxx CC=mpicc cmake -DCMAKE_MODULE_PATH="" -DUSE_MPI=ON CXXFLAGS="-Wall -pedantic -O0 -g2" -DPARMETIS_ROOT=/opt/extlib/parmetis/4.0.3/openmpi/1.8.1/gcc/4.9.0 -DCMAKE_PREFIX_PATH="/opt/extlib/boost/1.55.0/gcc/4.9.0;/opt/extlib/parmetis/4.0.3/openmpi/1.8.1/gcc/4.9.0;/opt/extlib/metis/5.1.0/gcc/4.9.0;" -DDUNE_GRID_EXPERIMENTAL_GRID_EXTENSIONS:BOOL=TRUE "/home/fomins/gitwork/hades-github-lspr-ag/dune-common"
-- The C compiler identification is GNU 4.9.0
-- The CXX compiler identification is GNU 4.9.0
-- Check for working C compiler: /opt/extlib/openmpi/1.8.1/gcc/4.9.0/bin/mpicc
-- Check for working C compiler: /opt/extlib/openmpi/1.8.1/gcc/4.9.0/bin/mpicc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working CXX compiler: /opt/extlib/openmpi/1.8.1/gcc/4.9.0/bin/mpicxx
-- Check for working CXX compiler: /opt/extlib/openmpi/1.8.1/gcc/4.9.0/bin/mpicxx -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- The Fortran compiler identification is GNU
-- Check for working Fortran compiler: /opt/extlib/gcc/4.9.0/gcc/4.9.0/bin/gfortran
-- Check for working Fortran compiler: /opt/extlib/gcc/4.9.0/gcc/4.9.0/bin/gfortran -- works
-- Detecting Fortran compiler ABI info
-- Detecting Fortran compiler ABI info - done
-- Checking whether /opt/extlib/gcc/4.9.0/gcc/4.9.0/bin/gfortran supports Fortran 90
-- Checking whether /opt/extlib/gcc/4.9.0/gcc/4.9.0/bin/gfortran supports Fortran 90 -- yes
-- Checking to see if CXX compiler accepts flag -std=c++11
-- Checking to see if CXX compiler accepts flag -std=c++11 - yes
-- Performing Test HAVE_NULLPTR
-- Performing Test HAVE_NULLPTR - Success
-- Performing Test HAS_ATTRIBUTE_UNUSED
-- Performing Test HAS_ATTRIBUTE_UNUSED - Success
-- Performing Test HAS_ATTRIBUTE_DEPRECATED
-- Performing Test HAS_ATTRIBUTE_DEPRECATED - Success
-- Performing Test HAS_ATTRIBUTE_DEPRECATED_MSG
-- Performing Test HAS_ATTRIBUTE_DEPRECATED_MSG - Success
-- Performing Test HAVE_CONSTEXPR
-- Performing Test HAVE_CONSTEXPR - Success
-- Performing Test HAVE_KEYWORD_FINAL
-- Performing Test HAVE_KEYWORD_FINAL - Success
-- Performing Test HAVE_RANGE_BASED_FOR
-- Performing Test HAVE_RANGE_BASED_FOR - Success
-- Performing Test HAVE_NOEXCEPT_SPECIFIER
-- Performing Test HAVE_NOEXCEPT_SPECIFIER - Success
-- Performing Test HAVE_CXA_DEMANGLE
-- Performing Test HAVE_CXA_DEMANGLE - Success
-- Looking for malloc.h
-- Looking for malloc.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for C++ include memory
-- Looking for C++ include memory - found
-- Found MPI_C: /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/lib/libmpi.so
-- Found MPI_CXX: /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/lib/libmpi_cxx.so;/home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/lib/libmpi.so
-- Found MPI_Fortran: /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/lib/libmpi_usempi.so;/home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/lib/libmpi_mpifh.so;/home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/lib/libmpi.so
-- Looking for include file pthread.h
-- Looking for include file pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - found
-- Found Threads: TRUE
-- Looking for MPI_Finalized
-- Looking for MPI_Finalized - found
-- Performing Test MPI_VERSION_SUPPORTED
-- Performing Test MPI_VERSION_SUPPORTED - Success
-- Detecting Fortran/C Interface
-- Detecting Fortran/C Interface - Found GLOBAL and MODULE mangling
-- Verifying Fortran/CXX Compiler Compatibility
-- Verifying Fortran/CXX Compiler Compatibility - Success
-- I could not find the latex2html command.
-- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE)
-- Found PkgConfig: /usr/bin/pkg-config (found version "0.26")
-- Performing tests specific to dune-common from file /home/fomins/gitwork/hades-github-lspr-ag/dune-common/cmake/modules/DuneCommonMacros.cmake.
-- Looking for Fortran dgemm
-- Looking for Fortran dgemm - found
-- A library with BLAS API found.
-- Looking for Fortran cheev
-- Looking for Fortran cheev - found
-- A library with LAPACK API found.
-- Looking for C++ include gmpxx.h
-- Looking for C++ include gmpxx.h - not found
-- Could NOT find GMP (missing: GMP_INCLUDE_DIR GMP_LIB GMPXX_LIB GMP_HEADER_WORKS GMPXX_LIB_WORKS)
-- Looking for sys/mman.h
-- Looking for sys/mman.h - found
-- Performing Test HAVE_MPROTECT
-- Performing Test HAVE_MPROTECT - Success
-- Using scripts from /home/fomins/gitwork/hades-github-lspr-ag/dune-common/cmake/scripts for creating doxygen stuff.
-- Not adding custom target for config.h generation
--
-- The following OPTIONAL packages have been found:
* PkgConfig
* BLAS
* LAPACK
* Inkscape
* MPI
* Threads
-- The following OPTIONAL packages have not been found:
* LATEX
* UnixCommands
* Doxygen
* GMP
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
DUNE_GRID_EXPERIMENTAL_GRID_EXTENSIONS
PARMETIS_ROOT
USE_MPI
-- Build files have been written to: /home/fomins/gitwork/hades-github-lspr-ag/dune-common/build-cmake
--- calling make for dune-common ---
build directory: build-cmake
make
Scanning dependencies of target dunecommon
[ 0%] Building CXX object dune/common/CMakeFiles/dunecommon.dir/debugallocator.cc.o
[ 16%] Building CXX object dune/common/CMakeFiles/dunecommon.dir/dynmatrixev.cc.o
[ 16%] Building CXX object dune/common/CMakeFiles/dunecommon.dir/exceptions.cc.o
[ 33%] Building CXX object dune/common/CMakeFiles/dunecommon.dir/fmatrixev.cc.o
[ 33%] Building CXX object dune/common/CMakeFiles/dunecommon.dir/ios_state.cc.o
[ 50%] Building CXX object dune/common/CMakeFiles/dunecommon.dir/parametertree.cc.o
[ 50%] Building CXX object dune/common/CMakeFiles/dunecommon.dir/parametertreeparser.cc.o
[ 66%] Building CXX object dune/common/CMakeFiles/dunecommon.dir/path.cc.o
[ 66%] Building CXX object dune/common/CMakeFiles/dunecommon.dir/stdstreams.cc.o
Linking CXX static library ../../lib/libdunecommon.a
[ 66%] Built target dunecommon
Scanning dependencies of target indexset
[ 83%] Building CXX object doc/comm/CMakeFiles/indexset.dir/indexset.cc.o
In file included from /home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/plocalindex.hh:9:0,
from /home/fomins/gitwork/hades-github-lspr-ag/dune-common/doc/comm/indexset.cc:7:
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/mpitraits.hh: In static member function ‘static ompi_datatype_t* Dune::MPITraits<Dune::FieldVector<K, n> >::getType()’:
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/mpitraits.hh:99:9: warning: ‘int MPI_Address(void*, MPI_Aint*)’ is deprecated (declared at /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:1178): MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations]
MPI_Address(&fvector, &base);
^
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/mpitraits.hh:100:9: warning: ‘int MPI_Address(void*, MPI_Aint*)’ is deprecated (declared at /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:1178): MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations]
MPI_Address(&(fvector[0]), &displ);
^
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/mpitraits.hh:104:9: warning: ‘int MPI_Type_struct(int, int*, MPI_Aint*, ompi_datatype_t**, ompi_datatype_t**)’ is deprecated (declared at /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:1787): MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations]
MPI_Type_struct(1, length, &displ, &vectortype, &datatype);
^
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/mpitraits.hh: In static member function ‘static ompi_datatype_t* Dune::MPITraits<Dune::bigunsignedint<k> >::getType()’:
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/mpitraits.hh:136:9: warning: ‘int MPI_Address(void*, MPI_Aint*)’ is deprecated (declared at /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:1178): MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations]
MPI_Address(&data, &base);
^
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/mpitraits.hh:137:9: warning: ‘int MPI_Address(void*, MPI_Aint*)’ is deprecated (declared at /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:1178): MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations]
MPI_Address(&(data.digit), &displ);
^
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/mpitraits.hh:140:9: warning: ‘int MPI_Type_struct(int, int*, MPI_Aint*, ompi_datatype_t**, ompi_datatype_t**)’ is deprecated (declared at /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:1787): MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations]
MPI_Type_struct(1, length, &displ, &vectortype, &datatype);
^
In file included from /home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/mpitraits.hh:7:0,
from /home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/plocalindex.hh:9,
from /home/fomins/gitwork/hades-github-lspr-ag/dune-common/doc/comm/indexset.cc:7:
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/mpitraits.hh: In static member function ‘static ompi_datatype_t* Dune::MPITraits<std::pair<_T1, _T2> >::getType()’:
/home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:1061:53: warning: ‘ompi_mpi_lb’ is deprecated (declared at /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:909): MPI_LB is deprecated in MPI-2.0 [-Wdeprecated-declarations]
#define MPI_LB OMPI_PREDEFINED_GLOBAL(MPI_Datatype, ompi_mpi_lb)
^
/home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:308:66: note: in definition of macro ‘OMPI_PREDEFINED_GLOBAL’
#define OMPI_PREDEFINED_GLOBAL(type, global) ((type) ((void *) &(global)))
^
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/mpitraits.hh:169:32: note: in expansion of macro ‘MPI_LB’
MPI_Datatype types[4] = {MPI_LB, MPITraits<T1>::getType(),
^
/home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:1060:53: warning: ‘ompi_mpi_ub’ is deprecated (declared at /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:910): MPI_UB is deprecated in MPI-2.0 [-Wdeprecated-declarations]
#define MPI_UB OMPI_PREDEFINED_GLOBAL(MPI_Datatype, ompi_mpi_ub)
^
/home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:308:66: note: in definition of macro ‘OMPI_PREDEFINED_GLOBAL’
#define OMPI_PREDEFINED_GLOBAL(type, global) ((type) ((void *) &(global)))
^
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/mpitraits.hh:170:58: note: in expansion of macro ‘MPI_UB’
MPITraits<T2>::getType(), MPI_UB};
^
In file included from /home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/plocalindex.hh:9:0,
from /home/fomins/gitwork/hades-github-lspr-ag/dune-common/doc/comm/indexset.cc:7:
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/mpitraits.hh:173:7: warning: ‘int MPI_Address(void*, MPI_Aint*)’ is deprecated (declared at /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:1178): MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations]
MPI_Address(rep, disp); // lower bound of the datatype
^
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/mpitraits.hh:174:7: warning: ‘int MPI_Address(void*, MPI_Aint*)’ is deprecated (declared at /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:1178): MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations]
MPI_Address(&(rep[0].first), disp+1);
^
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/mpitraits.hh:175:7: warning: ‘int MPI_Address(void*, MPI_Aint*)’ is deprecated (declared at /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:1178): MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations]
MPI_Address(&(rep[0].second), disp+2);
^
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/mpitraits.hh:176:7: warning: ‘int MPI_Address(void*, MPI_Aint*)’ is deprecated (declared at /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:1178): MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations]
MPI_Address(rep+1, disp+3); // upper bound of the datatype
^
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/mpitraits.hh:179:7: warning: ‘int MPI_Type_struct(int, int*, MPI_Aint*, ompi_datatype_t**, ompi_datatype_t**)’ is deprecated (declared at /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:1787): MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations]
MPI_Type_struct(4, length, disp, types, &type);
^
In file included from /home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/mpitraits.hh:7:0,
from /home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/plocalindex.hh:9,
from /home/fomins/gitwork/hades-github-lspr-ag/dune-common/doc/comm/indexset.cc:7:
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/plocalindex.hh: In static member function ‘static ompi_datatype_t* Dune::MPITraits<Dune::ParallelLocalIndex<T> >::getType()’:
/home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:1061:53: warning: ‘ompi_mpi_lb’ is deprecated (declared at /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:909): MPI_LB is deprecated in MPI-2.0 [-Wdeprecated-declarations]
#define MPI_LB OMPI_PREDEFINED_GLOBAL(MPI_Datatype, ompi_mpi_lb)
^
/home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:308:66: note: in definition of macro ‘OMPI_PREDEFINED_GLOBAL’
#define OMPI_PREDEFINED_GLOBAL(type, global) ((type) ((void *) &(global)))
^
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/plocalindex.hh:294:32: note: in expansion of macro ‘MPI_LB’
MPI_Datatype types[3] = {MPI_LB, MPITraits<char>::getType(), MPI_UB};
^
/home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:1060:53: warning: ‘ompi_mpi_ub’ is deprecated (declared at /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:910): MPI_UB is deprecated in MPI-2.0 [-Wdeprecated-declarations]
#define MPI_UB OMPI_PREDEFINED_GLOBAL(MPI_Datatype, ompi_mpi_ub)
^
/home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:308:66: note: in definition of macro ‘OMPI_PREDEFINED_GLOBAL’
#define OMPI_PREDEFINED_GLOBAL(type, global) ((type) ((void *) &(global)))
^
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/plocalindex.hh:294:68: note: in expansion of macro ‘MPI_UB’
MPI_Datatype types[3] = {MPI_LB, MPITraits<char>::getType(), MPI_UB};
^
In file included from /home/fomins/gitwork/hades-github-lspr-ag/dune-common/doc/comm/indexset.cc:7:0:
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/plocalindex.hh:297:7: warning: ‘int MPI_Address(void*, MPI_Aint*)’ is deprecated (declared at /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:1178): MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations]
MPI_Address(rep, disp); // lower bound of the datatype
^
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/plocalindex.hh:298:7: warning: ‘int MPI_Address(void*, MPI_Aint*)’ is deprecated (declared at /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:1178): MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations]
MPI_Address(&(rep[0].attribute_), disp+1);
^
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/plocalindex.hh:299:7: warning: ‘int MPI_Address(void*, MPI_Aint*)’ is deprecated (declared at /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:1178): MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations]
MPI_Address(rep+1, disp+2); // upper bound of the datatype
^
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/plocalindex.hh:302:7: warning: ‘int MPI_Type_struct(int, int*, MPI_Aint*, ompi_datatype_t**, ompi_datatype_t**)’ is deprecated (declared at /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:1787): MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations]
MPI_Type_struct(3, length, disp, types, &type);
^
Linking CXX executable indexset
[ 83%] Built target indexset
Scanning dependencies of target poosc08
[ 83%] Building CXX object doc/comm/CMakeFiles/poosc08.dir/poosc08.cc.o
In file included from /home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/mpicollectivecommunication.hh:24:0,
from /home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/mpihelper.hh:10,
from /home/fomins/gitwork/hades-github-lspr-ag/dune-common/doc/comm/poosc08.cc:8:
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/mpitraits.hh: In static member function ‘static ompi_datatype_t* Dune::MPITraits<Dune::FieldVector<K, n> >::getType()’:
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/mpitraits.hh:99:9: warning: ‘int MPI_Address(void*, MPI_Aint*)’ is deprecated (declared at /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:1178): MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations]
MPI_Address(&fvector, &base);
^
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/mpitraits.hh:100:9: warning: ‘int MPI_Address(void*, MPI_Aint*)’ is deprecated (declared at /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:1178): MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations]
MPI_Address(&(fvector[0]), &displ);
^
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/mpitraits.hh:104:9: warning: ‘int MPI_Type_struct(int, int*, MPI_Aint*, ompi_datatype_t**, ompi_datatype_t**)’ is deprecated (declared at /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:1787): MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations]
MPI_Type_struct(1, length, &displ, &vectortype, &datatype);
^
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/mpitraits.hh: In static member function ‘static ompi_datatype_t* Dune::MPITraits<Dune::bigunsignedint<k> >::getType()’:
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/mpitraits.hh:136:9: warning: ‘int MPI_Address(void*, MPI_Aint*)’ is deprecated (declared at /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:1178): MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations]
MPI_Address(&data, &base);
^
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/mpitraits.hh:137:9: warning: ‘int MPI_Address(void*, MPI_Aint*)’ is deprecated (declared at /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:1178): MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations]
MPI_Address(&(data.digit), &displ);
^
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/mpitraits.hh:140:9: warning: ‘int MPI_Type_struct(int, int*, MPI_Aint*, ompi_datatype_t**, ompi_datatype_t**)’ is deprecated (declared at /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:1787): MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations]
MPI_Type_struct(1, length, &displ, &vectortype, &datatype);
^
In file included from /home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/mpihelper.hh:9:0,
from /home/fomins/gitwork/hades-github-lspr-ag/dune-common/doc/comm/poosc08.cc:8:
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/mpitraits.hh: In static member function ‘static ompi_datatype_t* Dune::MPITraits<std::pair<_T1, _T2> >::getType()’:
/home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:1061:53: warning: ‘ompi_mpi_lb’ is deprecated (declared at /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:909): MPI_LB is deprecated in MPI-2.0 [-Wdeprecated-declarations]
#define MPI_LB OMPI_PREDEFINED_GLOBAL(MPI_Datatype, ompi_mpi_lb)
^
/home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:308:66: note: in definition of macro ‘OMPI_PREDEFINED_GLOBAL’
#define OMPI_PREDEFINED_GLOBAL(type, global) ((type) ((void *) &(global)))
^
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/mpitraits.hh:169:32: note: in expansion of macro ‘MPI_LB’
MPI_Datatype types[4] = {MPI_LB, MPITraits<T1>::getType(),
^
/home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:1060:53: warning: ‘ompi_mpi_ub’ is deprecated (declared at /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:910): MPI_UB is deprecated in MPI-2.0 [-Wdeprecated-declarations]
#define MPI_UB OMPI_PREDEFINED_GLOBAL(MPI_Datatype, ompi_mpi_ub)
^
/home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:308:66: note: in definition of macro ‘OMPI_PREDEFINED_GLOBAL’
#define OMPI_PREDEFINED_GLOBAL(type, global) ((type) ((void *) &(global)))
^
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/mpitraits.hh:170:58: note: in expansion of macro ‘MPI_UB’
MPITraits<T2>::getType(), MPI_UB};
^
In file included from /home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/mpicollectivecommunication.hh:24:0,
from /home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/mpihelper.hh:10,
from /home/fomins/gitwork/hades-github-lspr-ag/dune-common/doc/comm/poosc08.cc:8:
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/mpitraits.hh:173:7: warning: ‘int MPI_Address(void*, MPI_Aint*)’ is deprecated (declared at /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:1178): MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations]
MPI_Address(rep, disp); // lower bound of the datatype
^
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/mpitraits.hh:174:7: warning: ‘int MPI_Address(void*, MPI_Aint*)’ is deprecated (declared at /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:1178): MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations]
MPI_Address(&(rep[0].first), disp+1);
^
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/mpitraits.hh:175:7: warning: ‘int MPI_Address(void*, MPI_Aint*)’ is deprecated (declared at /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:1178): MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations]
MPI_Address(&(rep[0].second), disp+2);
^
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/mpitraits.hh:176:7: warning: ‘int MPI_Address(void*, MPI_Aint*)’ is deprecated (declared at /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:1178): MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations]
MPI_Address(rep+1, disp+3); // upper bound of the datatype
^
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/mpitraits.hh:179:7: warning: ‘int MPI_Type_struct(int, int*, MPI_Aint*, ompi_datatype_t**, ompi_datatype_t**)’ is deprecated (declared at /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:1787): MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations]
MPI_Type_struct(4, length, disp, types, &type);
^
In file included from /home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/mpihelper.hh:9:0,
from /home/fomins/gitwork/hades-github-lspr-ag/dune-common/doc/comm/poosc08.cc:8:
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/plocalindex.hh: In static member function ‘static ompi_datatype_t* Dune::MPITraits<Dune::ParallelLocalIndex<T> >::getType()’:
/home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:1061:53: warning: ‘ompi_mpi_lb’ is deprecated (declared at /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:909): MPI_LB is deprecated in MPI-2.0 [-Wdeprecated-declarations]
#define MPI_LB OMPI_PREDEFINED_GLOBAL(MPI_Datatype, ompi_mpi_lb)
^
/home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:308:66: note: in definition of macro ‘OMPI_PREDEFINED_GLOBAL’
#define OMPI_PREDEFINED_GLOBAL(type, global) ((type) ((void *) &(global)))
^
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/plocalindex.hh:294:32: note: in expansion of macro ‘MPI_LB’
MPI_Datatype types[3] = {MPI_LB, MPITraits<char>::getType(), MPI_UB};
^
/home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:1060:53: warning: ‘ompi_mpi_ub’ is deprecated (declared at /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:910): MPI_UB is deprecated in MPI-2.0 [-Wdeprecated-declarations]
#define MPI_UB OMPI_PREDEFINED_GLOBAL(MPI_Datatype, ompi_mpi_ub)
^
/home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:308:66: note: in definition of macro ‘OMPI_PREDEFINED_GLOBAL’
#define OMPI_PREDEFINED_GLOBAL(type, global) ((type) ((void *) &(global)))
^
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/plocalindex.hh:294:68: note: in expansion of macro ‘MPI_UB’
MPI_Datatype types[3] = {MPI_LB, MPITraits<char>::getType(), MPI_UB};
^
In file included from /home/fomins/gitwork/hades-github-lspr-ag/dune-common/doc/comm/poosc08.cc:10:0:
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/plocalindex.hh:297:7: warning: ‘int MPI_Address(void*, MPI_Aint*)’ is deprecated (declared at /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:1178): MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations]
MPI_Address(rep, disp); // lower bound of the datatype
^
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/plocalindex.hh:298:7: warning: ‘int MPI_Address(void*, MPI_Aint*)’ is deprecated (declared at /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:1178): MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations]
MPI_Address(&(rep[0].attribute_), disp+1);
^
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/plocalindex.hh:299:7: warning: ‘int MPI_Address(void*, MPI_Aint*)’ is deprecated (declared at /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:1178): MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations]
MPI_Address(rep+1, disp+2); // upper bound of the datatype
^
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/plocalindex.hh:302:7: warning: ‘int MPI_Type_struct(int, int*, MPI_Aint*, ompi_datatype_t**, ompi_datatype_t**)’ is deprecated (declared at /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:1787): MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations]
MPI_Type_struct(3, length, disp, types, &type);
^
Linking CXX executable poosc08
[ 83%] Built target poosc08
[100%] Generating poosc08_test.cc
Scanning dependencies of target poosc08_test
[100%] Building CXX object doc/comm/CMakeFiles/poosc08_test.dir/poosc08_test.cc.o
In file included from /home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/mpicollectivecommunication.hh:24:0,
from /home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/mpihelper.hh:10,
from /home/fomins/gitwork/hades-github-lspr-ag/dune-common/build-cmake/doc/comm/poosc08_test.cc:8:
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/mpitraits.hh: In static member function ‘static ompi_datatype_t* Dune::MPITraits<Dune::FieldVector<K, n> >::getType()’:
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/mpitraits.hh:99:9: warning: ‘int MPI_Address(void*, MPI_Aint*)’ is deprecated (declared at /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:1178): MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations]
MPI_Address(&fvector, &base);
^
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/mpitraits.hh:100:9: warning: ‘int MPI_Address(void*, MPI_Aint*)’ is deprecated (declared at /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:1178): MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations]
MPI_Address(&(fvector[0]), &displ);
^
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/mpitraits.hh:104:9: warning: ‘int MPI_Type_struct(int, int*, MPI_Aint*, ompi_datatype_t**, ompi_datatype_t**)’ is deprecated (declared at /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:1787): MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations]
MPI_Type_struct(1, length, &displ, &vectortype, &datatype);
^
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/mpitraits.hh: In static member function ‘static ompi_datatype_t* Dune::MPITraits<Dune::bigunsignedint<k> >::getType()’:
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/mpitraits.hh:136:9: warning: ‘int MPI_Address(void*, MPI_Aint*)’ is deprecated (declared at /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:1178): MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations]
MPI_Address(&data, &base);
^
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/mpitraits.hh:137:9: warning: ‘int MPI_Address(void*, MPI_Aint*)’ is deprecated (declared at /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:1178): MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations]
MPI_Address(&(data.digit), &displ);
^
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/mpitraits.hh:140:9: warning: ‘int MPI_Type_struct(int, int*, MPI_Aint*, ompi_datatype_t**, ompi_datatype_t**)’ is deprecated (declared at /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:1787): MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations]
MPI_Type_struct(1, length, &displ, &vectortype, &datatype);
^
In file included from /home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/mpihelper.hh:9:0,
from /home/fomins/gitwork/hades-github-lspr-ag/dune-common/build-cmake/doc/comm/poosc08_test.cc:8:
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/mpitraits.hh: In static member function ‘static ompi_datatype_t* Dune::MPITraits<std::pair<_T1, _T2> >::getType()’:
/home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:1061:53: warning: ‘ompi_mpi_lb’ is deprecated (declared at /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:909): MPI_LB is deprecated in MPI-2.0 [-Wdeprecated-declarations]
#define MPI_LB OMPI_PREDEFINED_GLOBAL(MPI_Datatype, ompi_mpi_lb)
^
/home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:308:66: note: in definition of macro ‘OMPI_PREDEFINED_GLOBAL’
#define OMPI_PREDEFINED_GLOBAL(type, global) ((type) ((void *) &(global)))
^
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/mpitraits.hh:169:32: note: in expansion of macro ‘MPI_LB’
MPI_Datatype types[4] = {MPI_LB, MPITraits<T1>::getType(),
^
/home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:1060:53: warning: ‘ompi_mpi_ub’ is deprecated (declared at /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:910): MPI_UB is deprecated in MPI-2.0 [-Wdeprecated-declarations]
#define MPI_UB OMPI_PREDEFINED_GLOBAL(MPI_Datatype, ompi_mpi_ub)
^
/home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:308:66: note: in definition of macro ‘OMPI_PREDEFINED_GLOBAL’
#define OMPI_PREDEFINED_GLOBAL(type, global) ((type) ((void *) &(global)))
^
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/mpitraits.hh:170:58: note: in expansion of macro ‘MPI_UB’
MPITraits<T2>::getType(), MPI_UB};
^
In file included from /home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/mpicollectivecommunication.hh:24:0,
from /home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/mpihelper.hh:10,
from /home/fomins/gitwork/hades-github-lspr-ag/dune-common/build-cmake/doc/comm/poosc08_test.cc:8:
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/mpitraits.hh:173:7: warning: ‘int MPI_Address(void*, MPI_Aint*)’ is deprecated (declared at /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:1178): MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations]
MPI_Address(rep, disp); // lower bound of the datatype
^
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/mpitraits.hh:174:7: warning: ‘int MPI_Address(void*, MPI_Aint*)’ is deprecated (declared at /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:1178): MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations]
MPI_Address(&(rep[0].first), disp+1);
^
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/mpitraits.hh:175:7: warning: ‘int MPI_Address(void*, MPI_Aint*)’ is deprecated (declared at /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:1178): MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations]
MPI_Address(&(rep[0].second), disp+2);
^
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/mpitraits.hh:176:7: warning: ‘int MPI_Address(void*, MPI_Aint*)’ is deprecated (declared at /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:1178): MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations]
MPI_Address(rep+1, disp+3); // upper bound of the datatype
^
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/mpitraits.hh:179:7: warning: ‘int MPI_Type_struct(int, int*, MPI_Aint*, ompi_datatype_t**, ompi_datatype_t**)’ is deprecated (declared at /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:1787): MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations]
MPI_Type_struct(4, length, disp, types, &type);
^
In file included from /home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/mpihelper.hh:9:0,
from /home/fomins/gitwork/hades-github-lspr-ag/dune-common/build-cmake/doc/comm/poosc08_test.cc:8:
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/plocalindex.hh: In static member function ‘static ompi_datatype_t* Dune::MPITraits<Dune::ParallelLocalIndex<T> >::getType()’:
/home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:1061:53: warning: ‘ompi_mpi_lb’ is deprecated (declared at /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:909): MPI_LB is deprecated in MPI-2.0 [-Wdeprecated-declarations]
#define MPI_LB OMPI_PREDEFINED_GLOBAL(MPI_Datatype, ompi_mpi_lb)
^
/home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:308:66: note: in definition of macro ‘OMPI_PREDEFINED_GLOBAL’
#define OMPI_PREDEFINED_GLOBAL(type, global) ((type) ((void *) &(global)))
^
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/plocalindex.hh:294:32: note: in expansion of macro ‘MPI_LB’
MPI_Datatype types[3] = {MPI_LB, MPITraits<char>::getType(), MPI_UB};
^
/home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:1060:53: warning: ‘ompi_mpi_ub’ is deprecated (declared at /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:910): MPI_UB is deprecated in MPI-2.0 [-Wdeprecated-declarations]
#define MPI_UB OMPI_PREDEFINED_GLOBAL(MPI_Datatype, ompi_mpi_ub)
^
/home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:308:66: note: in definition of macro ‘OMPI_PREDEFINED_GLOBAL’
#define OMPI_PREDEFINED_GLOBAL(type, global) ((type) ((void *) &(global)))
^
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/plocalindex.hh:294:68: note: in expansion of macro ‘MPI_UB’
MPI_Datatype types[3] = {MPI_LB, MPITraits<char>::getType(), MPI_UB};
^
In file included from /home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/remoteindices.hh:7:0,
from /home/fomins/gitwork/hades-github-lspr-ag/dune-common/build-cmake/doc/comm/poosc08_test.cc:10:
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/plocalindex.hh:297:7: warning: ‘int MPI_Address(void*, MPI_Aint*)’ is deprecated (declared at /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:1178): MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations]
MPI_Address(rep, disp); // lower bound of the datatype
^
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/plocalindex.hh:298:7: warning: ‘int MPI_Address(void*, MPI_Aint*)’ is deprecated (declared at /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:1178): MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations]
MPI_Address(&(rep[0].attribute_), disp+1);
^
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/plocalindex.hh:299:7: warning: ‘int MPI_Address(void*, MPI_Aint*)’ is deprecated (declared at /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:1178): MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations]
MPI_Address(rep+1, disp+2); // upper bound of the datatype
^
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/plocalindex.hh:302:7: warning: ‘int MPI_Type_struct(int, int*, MPI_Aint*, ompi_datatype_t**, ompi_datatype_t**)’ is deprecated (declared at /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:1787): MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations]
MPI_Type_struct(3, length, disp, types, &type);
^
In file included from /home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/mpihelper.hh:9:0,
from /home/fomins/gitwork/hades-github-lspr-ag/dune-common/build-cmake/doc/comm/poosc08_test.cc:8:
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/remoteindices.hh: In static member function ‘static ompi_datatype_t* Dune::MPITraits<Dune::IndexPair<TG, Dune::ParallelLocalIndex<TA> > >::getType()’:
/home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:1061:53: warning: ‘ompi_mpi_lb’ is deprecated (declared at /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:909): MPI_LB is deprecated in MPI-2.0 [-Wdeprecated-declarations]
#define MPI_LB OMPI_PREDEFINED_GLOBAL(MPI_Datatype, ompi_mpi_lb)
^
/home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:308:66: note: in definition of macro ‘OMPI_PREDEFINED_GLOBAL’
#define OMPI_PREDEFINED_GLOBAL(type, global) ((type) ((void *) &(global)))
^
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/remoteindices.hh:890:32: note: in expansion of macro ‘MPI_LB’
MPI_Datatype types[4] = {MPI_LB, MPITraits<TG>::getType(),
^
/home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:1060:53: warning: ‘ompi_mpi_ub’ is deprecated (declared at /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:910): MPI_UB is deprecated in MPI-2.0 [-Wdeprecated-declarations]
#define MPI_UB OMPI_PREDEFINED_GLOBAL(MPI_Datatype, ompi_mpi_ub)
^
/home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:308:66: note: in definition of macro ‘OMPI_PREDEFINED_GLOBAL’
#define OMPI_PREDEFINED_GLOBAL(type, global) ((type) ((void *) &(global)))
^
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/remoteindices.hh:891:79: note: in expansion of macro ‘MPI_UB’
MPITraits<ParallelLocalIndex<TA> >::getType(), MPI_UB};
^
In file included from /home/fomins/gitwork/hades-github-lspr-ag/dune-common/build-cmake/doc/comm/poosc08_test.cc:10:0:
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/remoteindices.hh:894:7: warning: ‘int MPI_Address(void*, MPI_Aint*)’ is deprecated (declared at /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:1178): MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations]
MPI_Address(rep, disp); // lower bound of the datatype
^
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/remoteindices.hh:895:7: warning: ‘int MPI_Address(void*, MPI_Aint*)’ is deprecated (declared at /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:1178): MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations]
MPI_Address(&(rep[0].global_), disp+1);
^
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/remoteindices.hh:896:7: warning: ‘int MPI_Address(void*, MPI_Aint*)’ is deprecated (declared at /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:1178): MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations]
MPI_Address(&(rep[0].local_), disp+2);
^
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/remoteindices.hh:897:7: warning: ‘int MPI_Address(void*, MPI_Aint*)’ is deprecated (declared at /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:1178): MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations]
MPI_Address(rep+1, disp+3); // upper bound of the datatype
^
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/remoteindices.hh:900:7: warning: ‘int MPI_Type_struct(int, int*, MPI_Aint*, ompi_datatype_t**, ompi_datatype_t**)’ is deprecated (declared at /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:1787): MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations]
MPI_Type_struct(4, length, disp, types, &type);
^
In file included from /home/fomins/gitwork/hades-github-lspr-ag/dune-common/build-cmake/doc/comm/poosc08_test.cc:11:0:
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/communicator.hh: In member function ‘void Dune::DatatypeCommunicator<T>::MPIDatatypeInformation<V>::add(int, int)’:
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/communicator.hh:422:9: warning: ‘int MPI_Address(void*, MPI_Aint*)’ is deprecated (declared at /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:1178): MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations]
MPI_Address( const_cast<void*>(CommPolicy<V>::getAddress(data_, local)),
^
In file included from /home/fomins/gitwork/hades-github-lspr-ag/dune-common/build-cmake/doc/comm/poosc08_test.cc:11:0:
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/communicator.hh: In member function ‘void Dune::DatatypeCommunicator<T>::createDataTypes(const T1&, const T2&, V&)’:
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/communicator.hh:1009:7: warning: ‘int MPI_Address(void*, MPI_Aint*)’ is deprecated (declared at /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:1178): MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations]
MPI_Address(const_cast<void *>(CommPolicy<V>::getAddress(data, 0)), &base);
^
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/communicator.hh:1017:7: warning: ‘int MPI_Type_hindexed(int, int*, MPI_Aint*, MPI_Datatype, ompi_datatype_t**)’ is deprecated (declared at /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:1769): MPI_Type_hindexed is superseded by MPI_Type_create_hindexed in MPI-2.0 [-Wdeprecated-declarations]
MPI_Type_hindexed(info.elements, info.length, info.displ,
^
In file included from /home/fomins/gitwork/hades-github-lspr-ag/dune-common/build-cmake/doc/comm/poosc08_test.cc:10:0:
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/remoteindices.hh: In instantiation of ‘static ompi_datatype_t* Dune::MPITraits<Dune::IndexPair<TG, Dune::ParallelLocalIndex<TA> > >::getType() [with TG = int; TA = Flags; MPI_Datatype = ompi_datatype_t*]’:
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/remoteindices.hh:1171:54: required from ‘void Dune::RemoteIndices<T, A>::buildRemote(bool) [with bool ignorePublic = true; T = Dune::ParallelIndexSet<int, Dune::ParallelLocalIndex<Flags> >; A = std::allocator<Dune::RemoteIndex<int, Flags> >]’
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/remoteindices.hh:1455:18: required from ‘void Dune::RemoteIndices<T, A>::rebuild() [with bool ignorePublic = true; T = Dune::ParallelIndexSet<int, Dune::ParallelLocalIndex<Flags> >; A = std::allocator<Dune::RemoteIndex<int, Flags> >]’
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/build-cmake/doc/comm/poosc08_test.cc:89:26: required from here
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/remoteindices.hh:894:28: warning: ‘int MPI_Address(void*, MPI_Aint*)’ is deprecated (declared at /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:1178): MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations]
MPI_Address(rep, disp); // lower bound of the datatype
^
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/remoteindices.hh:895:44: warning: ‘int MPI_Address(void*, MPI_Aint*)’ is deprecated (declared at /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:1178): MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations]
MPI_Address(&(rep[0].global_), disp+1);
^
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/remoteindices.hh:896:43: warning: ‘int MPI_Address(void*, MPI_Aint*)’ is deprecated (declared at /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:1178): MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations]
MPI_Address(&(rep[0].local_), disp+2);
^
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/remoteindices.hh:897:32: warning: ‘int MPI_Address(void*, MPI_Aint*)’ is deprecated (declared at /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:1178): MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations]
MPI_Address(rep+1, disp+3); // upper bound of the datatype
^
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/remoteindices.hh:900:52: warning: ‘int MPI_Type_struct(int, int*, MPI_Aint*, ompi_datatype_t**, ompi_datatype_t**)’ is deprecated (declared at /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:1787): MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations]
MPI_Type_struct(4, length, disp, types, &type);
^
In file included from /home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/remoteindices.hh:7:0,
from /home/fomins/gitwork/hades-github-lspr-ag/dune-common/build-cmake/doc/comm/poosc08_test.cc:10:
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/plocalindex.hh: In instantiation of ‘static ompi_datatype_t* Dune::MPITraits<Dune::ParallelLocalIndex<T> >::getType() [with T = Flags; MPI_Datatype = ompi_datatype_t*]’:
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/remoteindices.hh:891:76: required from ‘static ompi_datatype_t* Dune::MPITraits<Dune::IndexPair<TG, Dune::ParallelLocalIndex<TA> > >::getType() [with TG = int; TA = Flags; MPI_Datatype = ompi_datatype_t*]’
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/remoteindices.hh:1171:54: required from ‘void Dune::RemoteIndices<T, A>::buildRemote(bool) [with bool ignorePublic = true; T = Dune::ParallelIndexSet<int, Dune::ParallelLocalIndex<Flags> >; A = std::allocator<Dune::RemoteIndex<int, Flags> >]’
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/remoteindices.hh:1455:18: required from ‘void Dune::RemoteIndices<T, A>::rebuild() [with bool ignorePublic = true; T = Dune::ParallelIndexSet<int, Dune::ParallelLocalIndex<Flags> >; A = std::allocator<Dune::RemoteIndex<int, Flags> >]’
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/build-cmake/doc/comm/poosc08_test.cc:89:26: required from here
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/plocalindex.hh:297:28: warning: ‘int MPI_Address(void*, MPI_Aint*)’ is deprecated (declared at /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:1178): MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations]
MPI_Address(rep, disp); // lower bound of the datatype
^
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/plocalindex.hh:298:47: warning: ‘int MPI_Address(void*, MPI_Aint*)’ is deprecated (declared at /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:1178): MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations]
MPI_Address(&(rep[0].attribute_), disp+1);
^
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/plocalindex.hh:299:32: warning: ‘int MPI_Address(void*, MPI_Aint*)’ is deprecated (declared at /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:1178): MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations]
MPI_Address(rep+1, disp+2); // upper bound of the datatype
^
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/dune/common/parallel/plocalindex.hh:302:52: warning: ‘int MPI_Type_struct(int, int*, MPI_Aint*, ompi_datatype_t**, ompi_datatype_t**)’ is deprecated (declared at /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/include/mpi.h:1787): MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations]
MPI_Type_struct(3, length, disp, types, &type);
^
Linking CXX executable poosc08_test
[100%] Built target poosc08_test
--- dune-common done ---
--- calling all for dune-geometry ---
--- calling vcsetup for dune-geometry ---
--- calling autogen for dune-geometry ---
Skipping dune-autogen because of CMake
--- calling configure for dune-geometry ---
----- using default flags $CONFIGURE_FLAGS from /home/fomins/gitwork/hades-github-lspr-ag/af.debian7.lsprag.cmakebuild.minimalistic.opts -----
/home/fomins/gitwork/hades-github-lspr-ag/dune-geometry/lib/dunegeometryam2cmake.lib for converting options does not exist
CXX=mpicxx CC=mpicc cmake -DCMAKE_MODULE_PATH="" -DUSE_MPI=ON "-Ddune-common_DIR=/home/fomins/gitwork/hades-github-lspr-ag/dune-common/build-cmake" CXXFLAGS="-Wall -pedantic -O0 -g2" -DPARMETIS_ROOT=/opt/extlib/parmetis/4.0.3/openmpi/1.8.1/gcc/4.9.0 -DCMAKE_PREFIX_PATH="/opt/extlib/boost/1.55.0/gcc/4.9.0;/opt/extlib/parmetis/4.0.3/openmpi/1.8.1/gcc/4.9.0;/opt/extlib/metis/5.1.0/gcc/4.9.0;" -DDUNE_GRID_EXPERIMENTAL_GRID_EXTENSIONS:BOOL=TRUE "/home/fomins/gitwork/hades-github-lspr-ag/dune-geometry"
-- The C compiler identification is GNU 4.9.0
-- The CXX compiler identification is GNU 4.9.0
-- Check for working C compiler: /opt/extlib/openmpi/1.8.1/gcc/4.9.0/bin/mpicc
-- Check for working C compiler: /opt/extlib/openmpi/1.8.1/gcc/4.9.0/bin/mpicc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working CXX compiler: /opt/extlib/openmpi/1.8.1/gcc/4.9.0/bin/mpicxx
-- Check for working CXX compiler: /opt/extlib/openmpi/1.8.1/gcc/4.9.0/bin/mpicxx -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Dependencies for dune-geometry: dune-common (>= 2.4)
-- The Fortran compiler identification is GNU
-- Check for working Fortran compiler: /opt/extlib/gcc/4.9.0/gcc/4.9.0/bin/gfortran
-- Check for working Fortran compiler: /opt/extlib/gcc/4.9.0/gcc/4.9.0/bin/gfortran -- works
-- Detecting Fortran compiler ABI info
-- Detecting Fortran compiler ABI info - done
-- Checking whether /opt/extlib/gcc/4.9.0/gcc/4.9.0/bin/gfortran supports Fortran 90
-- Checking whether /opt/extlib/gcc/4.9.0/gcc/4.9.0/bin/gfortran supports Fortran 90 -- yes
-- Checking to see if CXX compiler accepts flag -std=c++11
-- Checking to see if CXX compiler accepts flag -std=c++11 - yes
-- Performing Test HAVE_NULLPTR
-- Performing Test HAVE_NULLPTR - Success
-- Performing Test HAS_ATTRIBUTE_UNUSED
-- Performing Test HAS_ATTRIBUTE_UNUSED - Success
-- Performing Test HAS_ATTRIBUTE_DEPRECATED
-- Performing Test HAS_ATTRIBUTE_DEPRECATED - Success
-- Performing Test HAS_ATTRIBUTE_DEPRECATED_MSG
-- Performing Test HAS_ATTRIBUTE_DEPRECATED_MSG - Success
-- Performing Test HAVE_CONSTEXPR
-- Performing Test HAVE_CONSTEXPR - Success
-- Performing Test HAVE_KEYWORD_FINAL
-- Performing Test HAVE_KEYWORD_FINAL - Success
-- Performing Test HAVE_RANGE_BASED_FOR
-- Performing Test HAVE_RANGE_BASED_FOR - Success
-- Performing Test HAVE_NOEXCEPT_SPECIFIER
-- Performing Test HAVE_NOEXCEPT_SPECIFIER - Success
-- Performing Test HAVE_CXA_DEMANGLE
-- Performing Test HAVE_CXA_DEMANGLE - Success
-- Looking for malloc.h
-- Looking for malloc.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for C++ include memory
-- Looking for C++ include memory - found
-- Found MPI_C: /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/lib/libmpi.so
-- Found MPI_CXX: /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/lib/libmpi_cxx.so;/home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/lib/libmpi.so
-- Found MPI_Fortran: /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/lib/libmpi_usempi.so;/home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/lib/libmpi_mpifh.so;/home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/lib/libmpi.so
-- Looking for include file pthread.h
-- Looking for include file pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - found
-- Found Threads: TRUE
-- Looking for MPI_Finalized
-- Looking for MPI_Finalized - found
-- Performing Test MPI_VERSION_SUPPORTED
-- Performing Test MPI_VERSION_SUPPORTED - Success
-- Detecting Fortran/C Interface
-- Detecting Fortran/C Interface - Found GLOBAL and MODULE mangling
-- Verifying Fortran/CXX Compiler Compatibility
-- Verifying Fortran/CXX Compiler Compatibility - Success
-- I could not find the latex2html command.
-- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE)
-- Found PkgConfig: /usr/bin/pkg-config (found version "0.26")
-- Performing tests specific to dune-common from file /home/fomins/gitwork/hades-github-lspr-ag/dune-common/cmake/modules/DuneCommonMacros.cmake.
-- Looking for Fortran dgemm
-- Looking for Fortran dgemm - found
-- A library with BLAS API found.
-- Looking for Fortran cheev
-- Looking for Fortran cheev - found
-- A library with LAPACK API found.
-- Looking for C++ include gmpxx.h
-- Looking for C++ include gmpxx.h - not found
-- Could NOT find GMP (missing: GMP_INCLUDE_DIR GMP_LIB GMPXX_LIB GMP_HEADER_WORKS GMPXX_LIB_WORKS)
-- Looking for sys/mman.h
-- Looking for sys/mman.h - found
-- Performing Test HAVE_MPROTECT
-- Performing Test HAVE_MPROTECT - Success
-- Setting dune-common_INCLUDE_DIRS=/home/fomins/gitwork/hades-github-lspr-ag/dune-common
-- Setting dune-common_LIBRARIES=dunecommon
-- Using scripts from /home/fomins/gitwork/hades-github-lspr-ag/dune-common/cmake/scripts for creating doxygen stuff.
-- Adding custom target for config.h generation
--
-- The following OPTIONAL packages have been found:
* MPI
* PkgConfig
* BLAS
* Threads
* LAPACK
* Inkscape
-- The following REQUIRED packages have been found:
* dune-common
-- The following OPTIONAL packages have not been found:
* LATEX
* UnixCommands
* Doxygen
* GMP
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
DUNE_GRID_EXPERIMENTAL_GRID_EXTENSIONS
PARMETIS_ROOT
USE_MPI
-- Build files have been written to: /home/fomins/gitwork/hades-github-lspr-ag/dune-geometry/build-cmake
--- calling make for dune-geometry ---
build directory: build-cmake
make
Scanning dependencies of target dunegeometry
[ 14%] Building CXX object lib/CMakeFiles/dunegeometry.dir/__/dune/geometry/genericgeometry/referencedomain.cc.o
[ 28%] Building CXX object lib/CMakeFiles/dunegeometry.dir/__/dune/geometry/genericgeometry/subtopologies.cc.o
[ 42%] Building CXX object lib/CMakeFiles/dunegeometry.dir/__/dune/geometry/quadraturerules/gauss.cc.o
[ 57%] Building CXX object lib/CMakeFiles/dunegeometry.dir/__/dune/geometry/quadraturerules/jacobi_1_0.cc.o
[ 71%] Building CXX object lib/CMakeFiles/dunegeometry.dir/__/dune/geometry/quadraturerules/jacobi_2_0.cc.o
[ 85%] Building CXX object lib/CMakeFiles/dunegeometry.dir/__/dune/geometry/quadraturerules/quadraturerules.cc.o
[100%] Building CXX object lib/CMakeFiles/dunegeometry.dir/__/dune/geometry/quadraturerules/gausslobatto.cc.o
Linking CXX static library libdunegeometry.a
[100%] Built target dunegeometry
--- dune-geometry done ---
--- calling all for dune-grid ---
--- calling vcsetup for dune-grid ---
--- calling autogen for dune-grid ---
Skipping dune-autogen because of CMake
--- calling configure for dune-grid ---
----- using default flags $CONFIGURE_FLAGS from /home/fomins/gitwork/hades-github-lspr-ag/af.debian7.lsprag.cmakebuild.minimalistic.opts -----
/home/fomins/gitwork/hades-github-lspr-ag/dune-geometry/lib/dunegeometryam2cmake.lib for converting options does not exist
CXX=mpicxx CC=mpicc cmake -DCMAKE_MODULE_PATH="" -DUSE_MPI=ON "-Ddune-common_DIR=/home/fomins/gitwork/hades-github-lspr-ag/dune-common/build-cmake" "-Ddune-geometry_DIR=/home/fomins/gitwork/hades-github-lspr-ag/dune-geometry/build-cmake" -DENABLE_EXPERIMENTAL_GRID_EXTENSIONS:BOOL=TRUE CXXFLAGS="-Wall -pedantic -O0 -g2" -DPARMETIS_ROOT=/opt/extlib/parmetis/4.0.3/openmpi/1.8.1/gcc/4.9.0 -DCMAKE_PREFIX_PATH="/opt/extlib/boost/1.55.0/gcc/4.9.0;/opt/extlib/parmetis/4.0.3/openmpi/1.8.1/gcc/4.9.0;/opt/extlib/metis/5.1.0/gcc/4.9.0;" -DDUNE_GRID_EXPERIMENTAL_GRID_EXTENSIONS:BOOL=TRUE "/home/fomins/gitwork/hades-github-lspr-ag/dune-grid"
-- The C compiler identification is GNU 4.9.0
-- The CXX compiler identification is GNU 4.9.0
-- Check for working C compiler: /opt/extlib/openmpi/1.8.1/gcc/4.9.0/bin/mpicc
-- Check for working C compiler: /opt/extlib/openmpi/1.8.1/gcc/4.9.0/bin/mpicc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working CXX compiler: /opt/extlib/openmpi/1.8.1/gcc/4.9.0/bin/mpicxx
-- Check for working CXX compiler: /opt/extlib/openmpi/1.8.1/gcc/4.9.0/bin/mpicxx -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Dependencies for dune-grid: dune-common (>= 2.4);dune-geometry (>= 2.4)
-- Dependencies for dune-geometry: dune-common (>= 2.4)
-- The Fortran compiler identification is GNU
-- Check for working Fortran compiler: /opt/extlib/gcc/4.9.0/gcc/4.9.0/bin/gfortran
-- Check for working Fortran compiler: /opt/extlib/gcc/4.9.0/gcc/4.9.0/bin/gfortran -- works
-- Detecting Fortran compiler ABI info
-- Detecting Fortran compiler ABI info - done
-- Checking whether /opt/extlib/gcc/4.9.0/gcc/4.9.0/bin/gfortran supports Fortran 90
-- Checking whether /opt/extlib/gcc/4.9.0/gcc/4.9.0/bin/gfortran supports Fortran 90 -- yes
-- Checking to see if CXX compiler accepts flag -std=c++11
-- Checking to see if CXX compiler accepts flag -std=c++11 - yes
-- Performing Test HAVE_NULLPTR
-- Performing Test HAVE_NULLPTR - Success
-- Performing Test HAS_ATTRIBUTE_UNUSED
-- Performing Test HAS_ATTRIBUTE_UNUSED - Success
-- Performing Test HAS_ATTRIBUTE_DEPRECATED
-- Performing Test HAS_ATTRIBUTE_DEPRECATED - Success
-- Performing Test HAS_ATTRIBUTE_DEPRECATED_MSG
-- Performing Test HAS_ATTRIBUTE_DEPRECATED_MSG - Success
-- Performing Test HAVE_CONSTEXPR
-- Performing Test HAVE_CONSTEXPR - Success
-- Performing Test HAVE_KEYWORD_FINAL
-- Performing Test HAVE_KEYWORD_FINAL - Success
-- Performing Test HAVE_RANGE_BASED_FOR
-- Performing Test HAVE_RANGE_BASED_FOR - Success
-- Performing Test HAVE_NOEXCEPT_SPECIFIER
-- Performing Test HAVE_NOEXCEPT_SPECIFIER - Success
-- Performing Test HAVE_CXA_DEMANGLE
-- Performing Test HAVE_CXA_DEMANGLE - Success
-- Looking for malloc.h
-- Looking for malloc.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for C++ include memory
-- Looking for C++ include memory - found
-- Found MPI_C: /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/lib/libmpi.so
-- Found MPI_CXX: /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/lib/libmpi_cxx.so;/home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/lib/libmpi.so
-- Found MPI_Fortran: /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/lib/libmpi_usempi.so;/home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/lib/libmpi_mpifh.so;/home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/lib/libmpi.so
-- Looking for include file pthread.h
-- Looking for include file pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - found
-- Found Threads: TRUE
-- Looking for MPI_Finalized
-- Looking for MPI_Finalized - found
-- Performing Test MPI_VERSION_SUPPORTED
-- Performing Test MPI_VERSION_SUPPORTED - Success
-- Detecting Fortran/C Interface
-- Detecting Fortran/C Interface - Found GLOBAL and MODULE mangling
-- Verifying Fortran/CXX Compiler Compatibility
-- Verifying Fortran/CXX Compiler Compatibility - Success
-- I could not find the latex2html command.
-- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE)
-- Found PkgConfig: /usr/bin/pkg-config (found version "0.26")
-- Performing tests specific to dune-common from file /home/fomins/gitwork/hades-github-lspr-ag/dune-common/cmake/modules/DuneCommonMacros.cmake.
-- Looking for Fortran dgemm
-- Looking for Fortran dgemm - found
-- A library with BLAS API found.
-- Looking for Fortran cheev
-- Looking for Fortran cheev - found
-- A library with LAPACK API found.
-- Looking for C++ include gmpxx.h
-- Looking for C++ include gmpxx.h - not found
-- Could NOT find GMP (missing: GMP_INCLUDE_DIR GMP_LIB GMPXX_LIB GMP_HEADER_WORKS GMPXX_LIB_WORKS)
-- Looking for sys/mman.h
-- Looking for sys/mman.h - found
-- Performing Test HAVE_MPROTECT
-- Performing Test HAVE_MPROTECT - Success
-- Setting dune-common_INCLUDE_DIRS=/home/fomins/gitwork/hades-github-lspr-ag/dune-common
-- Setting dune-common_LIBRARIES=dunecommon
-- Setting dune-geometry_INCLUDE_DIRS=/home/fomins/gitwork/hades-github-lspr-ag/dune-geometry
-- Setting dune-geometry_LIBRARIES=dunegeometry
-- Performing tests specific to dune-grid from file /home/fomins/gitwork/hades-github-lspr-ag/dune-grid/cmake/modules/DuneGridMacros.cmake.
-- checking for module 'alugrid'
-- package 'alugrid' not found
-- checking for module 'alugrid'
-- package 'alugrid' not found
-- Could NOT find ALUGrid (missing: ALUGRID_VERSION ALUGRID_INCLUDE_PATH ALUGRID_LIB ALUGRID_LIB_PATH ALULIB_FUNCTIONAL HAVE_ALUGRID_SERIAL_H)
CMake Warning at cmake/modules/UseUG.cmake:27 (find_package):
Could not find a package configuration file provided by "UG" (requested
version 3.11.0) with any of the following names:
UGConfig.cmake
ug-config.cmake
Add the installation prefix of "UG" to CMAKE_PREFIX_PATH or set "UG_DIR" to
a directory containing one of the above files. If "UG" provides a separate
development package or SDK, be sure it has been installed.
Call Stack (most recent call first):
cmake/modules/DuneGridMacros.cmake:11 (include)
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/cmake/modules/DuneMacros.cmake:505 (include)
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/cmake/modules/DuneMacros.cmake:634 (dune_process_dependency_macros)
CMakeLists.txt:22 (dune_project)
-- Could NOT find UG (missing: UG_DIR HAVE_UG)
-- Looking for XOpenDisplay in /usr/lib/x86_64-linux-gnu/libX11.so;/usr/lib/x86_64-linux-gnu/libXext.so
-- Looking for XOpenDisplay in /usr/lib/x86_64-linux-gnu/libX11.so;/usr/lib/x86_64-linux-gnu/libXext.so - found
-- Looking for gethostbyname
-- Looking for gethostbyname - found
-- Looking for connect
-- Looking for connect - found
-- Looking for remove
-- Looking for remove - found
-- Looking for shmat
-- Looking for shmat - found
-- Looking for IceConnectionNumber in ICE
-- Looking for IceConnectionNumber in ICE - found
-- Found X11: /usr/lib/x86_64-linux-gnu/libX11.so
-- Found OpenGL: /usr/lib/libGL.so
-- Looking for include file grape.h
-- Looking for include file grape.h - not found
-- Looking for grape in gr
-- Looking for grape in gr - not found
-- Could NOT find Grape (missing: GRAPE_INCLUDE_DIR GRAPE_LIBRARY _GRAPE_LIB_FUNCTIONAL _GRAPE_HEADER_USABLE)
-- checking for one of the modules 'psurface'
-- checking for module 'psurface'
-- package 'psurface' not found
-- Could NOT find psurface (missing: PSURFACE_INCLUDE_DIR PSURFACE_LIBRARY)
-- Could NOT find AmiraMesh (missing: AMIRAMESH_INCLUDE_DIR AMIRAMESH_LIBRARY)
-- Using scripts from /home/fomins/gitwork/hades-github-lspr-ag/dune-common/cmake/scripts for creating doxygen stuff.
-- Adding custom target for config.h generation
--
-- The following features have been enabled:
* Experimental grid extensions , Enables additional grid features.
-- The following OPTIONAL packages have been found:
* MPI
* PkgConfig
* BLAS
* Threads
* LAPACK
* Inkscape
* X11
* OpenGL
-- The following REQUIRED packages have been found:
* dune-common
* dune-geometry
-- The following OPTIONAL packages have not been found:
* LATEX
* UnixCommands
* Doxygen
* GMP
* ALUGrid
* Alberta
* UG (required version >= 3.11.0)
* Grape
* Psurface
* AmiraMesh
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
ENABLE_EXPERIMENTAL_GRID_EXTENSIONS
PARMETIS_ROOT
USE_MPI
-- Build files have been written to: /home/fomins/gitwork/hades-github-lspr-ag/dune-grid/build-cmake
--- calling make for dune-grid ---
build directory: build-cmake
make
Scanning dependencies of target dunegrid
[ 14%] Building CXX object lib/CMakeFiles/dunegrid.dir/__/dune/grid/onedgrid/onedgrid.cc.o
[ 14%] Building CXX object lib/CMakeFiles/dunegrid.dir/__/dune/grid/onedgrid/onedgridfactory.cc.o
[ 14%] Building CXX object lib/CMakeFiles/dunegrid.dir/__/dune/grid/onedgrid/nulliteratorfactory.cc.o
[ 28%] Building CXX object lib/CMakeFiles/dunegrid.dir/__/dune/grid/io/file/dgfparser/dgfparser.cc.o
[ 28%] Building CXX object lib/CMakeFiles/dunegrid.dir/__/dune/grid/io/file/dgfparser/dgfug.cc.o
[ 28%] Building CXX object lib/CMakeFiles/dunegrid.dir/__/dune/grid/io/file/dgfparser/blocks/basic.cc.o
[ 42%] Building CXX object lib/CMakeFiles/dunegrid.dir/__/dune/grid/io/file/dgfparser/blocks/boundarydom.cc.o
[ 42%] Building CXX object lib/CMakeFiles/dunegrid.dir/__/dune/grid/io/file/dgfparser/blocks/boundaryseg.cc.o
[ 42%] Building CXX object lib/CMakeFiles/dunegrid.dir/__/dune/grid/io/file/dgfparser/blocks/cube.cc.o
[ 57%] Building CXX object lib/CMakeFiles/dunegrid.dir/__/dune/grid/io/file/dgfparser/blocks/dim.cc.o
[ 57%] Building CXX object lib/CMakeFiles/dunegrid.dir/__/dune/grid/io/file/dgfparser/blocks/general.cc.o
[ 71%] Building CXX object lib/CMakeFiles/dunegrid.dir/__/dune/grid/io/file/dgfparser/blocks/gridparameter.cc.o
[ 71%] Building CXX object lib/CMakeFiles/dunegrid.dir/__/dune/grid/io/file/dgfparser/blocks/interval.cc.o
[ 71%] Building CXX object lib/CMakeFiles/dunegrid.dir/__/dune/grid/io/file/dgfparser/blocks/periodicfacetrans.cc.o
[ 85%] Building CXX object lib/CMakeFiles/dunegrid.dir/__/dune/grid/io/file/dgfparser/blocks/projection.cc.o
[ 85%] Building CXX object lib/CMakeFiles/dunegrid.dir/__/dune/grid/io/file/dgfparser/blocks/simplex.cc.o
[ 85%] Building CXX object lib/CMakeFiles/dunegrid.dir/__/dune/grid/io/file/dgfparser/blocks/simplexgeneration.cc.o
[100%] Building CXX object lib/CMakeFiles/dunegrid.dir/__/dune/grid/io/file/dgfparser/blocks/vertex.cc.o
Linking CXX static library libdunegrid.a
[100%] Built target dunegrid
--- dune-grid done ---
--- calling all for dune-localfunctions ---
--- calling vcsetup for dune-localfunctions ---
--- calling autogen for dune-localfunctions ---
Skipping dune-autogen because of CMake
--- calling configure for dune-localfunctions ---
----- using default flags $CONFIGURE_FLAGS from /home/fomins/gitwork/hades-github-lspr-ag/af.debian7.lsprag.cmakebuild.minimalistic.opts -----
/home/fomins/gitwork/hades-github-lspr-ag/dune-geometry/lib/dunegeometryam2cmake.lib for converting options does not exist
/home/fomins/gitwork/hades-github-lspr-ag/dune-localfunctions/lib/dunelocalfunctionsam2cmake.lib for converting options does not exist
CXX=mpicxx CC=mpicc cmake -DCMAKE_MODULE_PATH="" -DUSE_MPI=ON "-Ddune-common_DIR=/home/fomins/gitwork/hades-github-lspr-ag/dune-common/build-cmake" "-Ddune-geometry_DIR=/home/fomins/gitwork/hades-github-lspr-ag/dune-geometry/build-cmake" CXXFLAGS="-Wall -pedantic -O0 -g2" -DPARMETIS_ROOT=/opt/extlib/parmetis/4.0.3/openmpi/1.8.1/gcc/4.9.0 -DCMAKE_PREFIX_PATH="/opt/extlib/boost/1.55.0/gcc/4.9.0;/opt/extlib/parmetis/4.0.3/openmpi/1.8.1/gcc/4.9.0;/opt/extlib/metis/5.1.0/gcc/4.9.0;" -DDUNE_GRID_EXPERIMENTAL_GRID_EXTENSIONS:BOOL=TRUE "/home/fomins/gitwork/hades-github-lspr-ag/dune-localfunctions"
-- The C compiler identification is GNU 4.9.0
-- The CXX compiler identification is GNU 4.9.0
-- Check for working C compiler: /opt/extlib/openmpi/1.8.1/gcc/4.9.0/bin/mpicc
-- Check for working C compiler: /opt/extlib/openmpi/1.8.1/gcc/4.9.0/bin/mpicc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working CXX compiler: /opt/extlib/openmpi/1.8.1/gcc/4.9.0/bin/mpicxx
-- Check for working CXX compiler: /opt/extlib/openmpi/1.8.1/gcc/4.9.0/bin/mpicxx -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Dependencies for dune-localfunctions: dune-geometry (>= 2.4)
-- Dependencies for dune-geometry: dune-common (>= 2.4)
-- The Fortran compiler identification is GNU
-- Check for working Fortran compiler: /opt/extlib/gcc/4.9.0/gcc/4.9.0/bin/gfortran
-- Check for working Fortran compiler: /opt/extlib/gcc/4.9.0/gcc/4.9.0/bin/gfortran -- works
-- Detecting Fortran compiler ABI info
-- Detecting Fortran compiler ABI info - done
-- Checking whether /opt/extlib/gcc/4.9.0/gcc/4.9.0/bin/gfortran supports Fortran 90
-- Checking whether /opt/extlib/gcc/4.9.0/gcc/4.9.0/bin/gfortran supports Fortran 90 -- yes
-- Checking to see if CXX compiler accepts flag -std=c++11
-- Checking to see if CXX compiler accepts flag -std=c++11 - yes
-- Performing Test HAVE_NULLPTR
-- Performing Test HAVE_NULLPTR - Success
-- Performing Test HAS_ATTRIBUTE_UNUSED
-- Performing Test HAS_ATTRIBUTE_UNUSED - Success
-- Performing Test HAS_ATTRIBUTE_DEPRECATED
-- Performing Test HAS_ATTRIBUTE_DEPRECATED - Success
-- Performing Test HAS_ATTRIBUTE_DEPRECATED_MSG
-- Performing Test HAS_ATTRIBUTE_DEPRECATED_MSG - Success
-- Performing Test HAVE_CONSTEXPR
-- Performing Test HAVE_CONSTEXPR - Success
-- Performing Test HAVE_KEYWORD_FINAL
-- Performing Test HAVE_KEYWORD_FINAL - Success
-- Performing Test HAVE_RANGE_BASED_FOR
-- Performing Test HAVE_RANGE_BASED_FOR - Success
-- Performing Test HAVE_NOEXCEPT_SPECIFIER
-- Performing Test HAVE_NOEXCEPT_SPECIFIER - Success
-- Performing Test HAVE_CXA_DEMANGLE
-- Performing Test HAVE_CXA_DEMANGLE - Success
-- Looking for malloc.h
-- Looking for malloc.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for C++ include memory
-- Looking for C++ include memory - found
-- Found MPI_C: /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/lib/libmpi.so
-- Found MPI_CXX: /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/lib/libmpi_cxx.so;/home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/lib/libmpi.so
-- Found MPI_Fortran: /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/lib/libmpi_usempi.so;/home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/lib/libmpi_mpifh.so;/home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/lib/libmpi.so
-- Looking for include file pthread.h
-- Looking for include file pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - found
-- Found Threads: TRUE
-- Looking for MPI_Finalized
-- Looking for MPI_Finalized - found
-- Performing Test MPI_VERSION_SUPPORTED
-- Performing Test MPI_VERSION_SUPPORTED - Success
-- Detecting Fortran/C Interface
-- Detecting Fortran/C Interface - Found GLOBAL and MODULE mangling
-- Verifying Fortran/CXX Compiler Compatibility
-- Verifying Fortran/CXX Compiler Compatibility - Success
-- I could not find the latex2html command.
-- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE)
-- Found PkgConfig: /usr/bin/pkg-config (found version "0.26")
-- Performing tests specific to dune-common from file /home/fomins/gitwork/hades-github-lspr-ag/dune-common/cmake/modules/DuneCommonMacros.cmake.
-- Looking for Fortran dgemm
-- Looking for Fortran dgemm - found
-- A library with BLAS API found.
-- Looking for Fortran cheev
-- Looking for Fortran cheev - found
-- A library with LAPACK API found.
-- Looking for C++ include gmpxx.h
-- Looking for C++ include gmpxx.h - not found
-- Could NOT find GMP (missing: GMP_INCLUDE_DIR GMP_LIB GMPXX_LIB GMP_HEADER_WORKS GMPXX_LIB_WORKS)
-- Looking for sys/mman.h
-- Looking for sys/mman.h - found
-- Performing Test HAVE_MPROTECT
-- Performing Test HAVE_MPROTECT - Success
-- Setting dune-common_INCLUDE_DIRS=/home/fomins/gitwork/hades-github-lspr-ag/dune-common
-- Setting dune-common_LIBRARIES=dunecommon
-- Setting dune-geometry_INCLUDE_DIRS=/home/fomins/gitwork/hades-github-lspr-ag/dune-geometry
-- Setting dune-geometry_LIBRARIES=dunegeometry
-- Performing tests specific to dune-localfunctions from file /home/fomins/gitwork/hades-github-lspr-ag/dune-localfunctions/cmake/modules/DuneLocalfunctionsMacros.cmake.
-- Using scripts from /home/fomins/gitwork/hades-github-lspr-ag/dune-common/cmake/scripts for creating doxygen stuff.
-- Adding custom target for config.h generation
--
-- The following OPTIONAL packages have been found:
* MPI
* PkgConfig
* BLAS
* Threads
* LAPACK
* Inkscape
-- The following REQUIRED packages have been found:
* dune-common
* dune-geometry
-- The following OPTIONAL packages have not been found:
* LATEX
* UnixCommands
* Doxygen
* GMP
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
DUNE_GRID_EXPERIMENTAL_GRID_EXTENSIONS
PARMETIS_ROOT
USE_MPI
-- Build files have been written to: /home/fomins/gitwork/hades-github-lspr-ag/dune-localfunctions/build-cmake
--- calling make for dune-localfunctions ---
build directory: build-cmake
make
--- dune-localfunctions done ---
--- calling all for dune-alugrid ---
--- calling vcsetup for dune-alugrid ---
--- calling autogen for dune-alugrid ---
Skipping dune-autogen because of CMake
--- calling configure for dune-alugrid ---
----- using default flags $CONFIGURE_FLAGS from /home/fomins/gitwork/hades-github-lspr-ag/af.debian7.lsprag.cmakebuild.minimalistic.opts -----
/home/fomins/gitwork/hades-github-lspr-ag/dune-geometry/lib/dunegeometryam2cmake.lib for converting options does not exist
CXX=mpicxx CC=mpicc cmake -DCMAKE_MODULE_PATH="" -DUSE_MPI=ON "-Ddune-common_DIR=/home/fomins/gitwork/hades-github-lspr-ag/dune-common/build-cmake" "-Ddune-geometry_DIR=/home/fomins/gitwork/hades-github-lspr-ag/dune-geometry/build-cmake" -DENABLE_EXPERIMENTAL_GRID_EXTENSIONS:BOOL=TRUE "-Ddune-grid_DIR=/home/fomins/gitwork/hades-github-lspr-ag/dune-grid/build-cmake" CXXFLAGS="-Wall -pedantic -O0 -g2" -DPARMETIS_ROOT=/opt/extlib/parmetis/4.0.3/openmpi/1.8.1/gcc/4.9.0 -DCMAKE_PREFIX_PATH="/opt/extlib/boost/1.55.0/gcc/4.9.0;/opt/extlib/parmetis/4.0.3/openmpi/1.8.1/gcc/4.9.0;/opt/extlib/metis/5.1.0/gcc/4.9.0;" -DDUNE_GRID_EXPERIMENTAL_GRID_EXTENSIONS:BOOL=TRUE "/home/fomins/gitwork/hades-github-lspr-ag/dune-alugrid"
-- Dependencies for dune-alugrid: dune-grid (>= 2.3)
-- Dependencies for dune-grid: dune-common (>= 2.4);dune-geometry (>= 2.4)
-- Dependencies for dune-geometry: dune-common (>= 2.4)
-- I could not find the latex2html command.
-- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE)
-- Performing tests specific to dune-common from file /home/fomins/gitwork/hades-github-lspr-ag/dune-common/cmake/modules/DuneCommonMacros.cmake.
-- A library with BLAS API found.
-- A library with LAPACK API found.
-- Could NOT find GMP (missing: GMP_INCLUDE_DIR GMP_LIB GMPXX_LIB GMP_HEADER_WORKS GMPXX_LIB_WORKS)
-- Setting dune-common_INCLUDE_DIRS=/home/fomins/gitwork/hades-github-lspr-ag/dune-common
-- Setting dune-common_LIBRARIES=dunecommon
-- Setting dune-geometry_INCLUDE_DIRS=/home/fomins/gitwork/hades-github-lspr-ag/dune-geometry
-- Setting dune-geometry_LIBRARIES=dunegeometry
-- Performing tests specific to dune-grid from file /home/fomins/gitwork/hades-github-lspr-ag/dune-grid/cmake/modules/DuneGridMacros.cmake.
-- checking for module 'alugrid'
-- package 'alugrid' not found
-- checking for module 'alugrid'
-- package 'alugrid' not found
-- Could NOT find ALUGrid (missing: ALUGRID_VERSION ALUGRID_INCLUDE_PATH ALUGRID_LIB ALUGRID_LIB_PATH ALULIB_FUNCTIONAL HAVE_ALUGRID_SERIAL_H)
CMake Warning at /home/fomins/gitwork/hades-github-lspr-ag/dune-grid/cmake/modules/UseUG.cmake:27 (find_package):
Could not find a package configuration file provided by "UG" (requested
version 3.11.0) with any of the following names:
UGConfig.cmake
ug-config.cmake
Add the installation prefix of "UG" to CMAKE_PREFIX_PATH or set "UG_DIR" to
a directory containing one of the above files. If "UG" provides a separate
development package or SDK, be sure it has been installed.
Call Stack (most recent call first):
/home/fomins/gitwork/hades-github-lspr-ag/dune-grid/cmake/modules/DuneGridMacros.cmake:11 (include)
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/cmake/modules/DuneMacros.cmake:505 (include)
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/cmake/modules/DuneMacros.cmake:634 (dune_process_dependency_macros)
CMakeLists.txt:26 (dune_project)
-- Could NOT find UG (missing: UG_DIR HAVE_UG)
-- Could NOT find Grape (missing: GRAPE_INCLUDE_DIR GRAPE_LIBRARY _GRAPE_LIB_FUNCTIONAL _GRAPE_HEADER_USABLE)
-- checking for one of the modules 'psurface'
-- checking for module 'psurface'
-- package 'psurface' not found
-- Could NOT find psurface (missing: PSURFACE_INCLUDE_DIR PSURFACE_LIBRARY)
-- Could NOT find AmiraMesh (missing: AMIRAMESH_INCLUDE_DIR AMIRAMESH_LIBRARY)
-- Setting dune-grid_INCLUDE_DIRS=/home/fomins/gitwork/hades-github-lspr-ag/dune-grid
-- Setting dune-grid_LIBRARIES=dunegrid
-- Performing tests specific to dune-alugrid from file /home/fomins/gitwork/hades-github-lspr-ag/dune-alugrid/cmake/modules/DuneAlugridMacros.cmake.
-- Could NOT find SIONlib (missing: SIONLIB_INCLUDE_DIR SIONLIB_LIBRARY SIONLIB_HEADER_USABLE SIONLIB_LIB_WORKS SIONLIB_LIB_SIONSER_WORKS)
-- Could NOT find DLMalloc (missing: DLMALLOC_INCLUDE_DIR DLMALLOC_SOURCE_USABLE)
Zoltan Dir: ZOLTAN_INCLUDE_DIR-NOTFOUND
-- Could NOT find ZOLTAN (missing: ZOLTAN_INCLUDE_DIR ZOLTAN_LIBRARY ZOLTAN_HEADER_USABLE)
CMake Warning (dev) at cmake/modules/DuneAlugridMacros.cmake:49 (message):
TODO: Improve module test.
Call Stack (most recent call first):
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/cmake/modules/DuneMacros.cmake:505 (include)
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/cmake/modules/DuneMacros.cmake:634 (dune_process_dependency_macros)
CMakeLists.txt:26 (dune_project)
This warning is for project developers. Use -Wno-dev to suppress it.
-- Adding custom target for config.h generation
--
-- The following features have been enabled:
* Experimental grid extensions , Enables additional grid features.
-- The following OPTIONAL packages have been found:
* MPI
* PkgConfig
* BLAS
* Threads
* LAPACK
* Inkscape
* X11
* OpenGL
* ZLIB
-- The following REQUIRED packages have been found:
* dune-common
* dune-grid
* dune-geometry
-- The following OPTIONAL packages have not been found:
* LATEX
* UnixCommands
* Doxygen
* GMP
* ALUGrid
* Alberta
* UG (required version >= 3.11.0)
* Grape
* Psurface
* AmiraMesh
* SIONlib
* DLMalloc
* ZOLTAN
-- Configuring done
-- Generating done
-- Build files have been written to: /home/fomins/gitwork/hades-github-lspr-ag/dune-alugrid/build-cmake
--- calling make for dune-alugrid ---
build directory: build-cmake
make
[100%] Built target dunealugrid
--- dune-alugrid done ---
--- calling all for dune-curvilineargeometry ---
--- calling vcsetup for dune-curvilineargeometry ---
--- calling autogen for dune-curvilineargeometry ---
Skipping dune-autogen because of CMake
--- calling configure for dune-curvilineargeometry ---
----- using default flags $CONFIGURE_FLAGS from /home/fomins/gitwork/hades-github-lspr-ag/af.debian7.lsprag.cmakebuild.minimalistic.opts -----
/home/fomins/gitwork/hades-github-lspr-ag/dune-geometry/lib/dunegeometryam2cmake.lib for converting options does not exist
/home/fomins/gitwork/hades-github-lspr-ag/dune-curvilineargeometry/lib/dunecurvilineargeometryam2cmake.lib for converting options does not exist
CXX=mpicxx CC=mpicc cmake -DCMAKE_MODULE_PATH="" -DUSE_MPI=ON "-Ddune-common_DIR=/home/fomins/gitwork/hades-github-lspr-ag/dune-common/build-cmake" "-Ddune-geometry_DIR=/home/fomins/gitwork/hades-github-lspr-ag/dune-geometry/build-cmake" CXXFLAGS="-Wall -pedantic -O0 -g2" -DPARMETIS_ROOT=/opt/extlib/parmetis/4.0.3/openmpi/1.8.1/gcc/4.9.0 -DCMAKE_PREFIX_PATH="/opt/extlib/boost/1.55.0/gcc/4.9.0;/opt/extlib/parmetis/4.0.3/openmpi/1.8.1/gcc/4.9.0;/opt/extlib/metis/5.1.0/gcc/4.9.0;" -DDUNE_GRID_EXPERIMENTAL_GRID_EXTENSIONS:BOOL=TRUE "/home/fomins/gitwork/hades-github-lspr-ag/dune-curvilineargeometry"
-- Dependencies for dune-curvilineargeometry: dune-common;dune-geometry
-- Dependencies for dune-geometry: dune-common (>= 2.4)
-- I could not find the latex2html command.
-- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE)
-- Performing tests specific to dune-common from file /home/fomins/gitwork/hades-github-lspr-ag/dune-common/cmake/modules/DuneCommonMacros.cmake.
-- A library with BLAS API found.
-- A library with LAPACK API found.
-- Could NOT find GMP (missing: GMP_INCLUDE_DIR GMP_LIB GMPXX_LIB GMP_HEADER_WORKS GMPXX_LIB_WORKS)
-- Setting dune-common_INCLUDE_DIRS=/home/fomins/gitwork/hades-github-lspr-ag/dune-common
-- Setting dune-common_LIBRARIES=dunecommon
-- Setting dune-geometry_INCLUDE_DIRS=/home/fomins/gitwork/hades-github-lspr-ag/dune-geometry
-- Setting dune-geometry_LIBRARIES=dunegeometry
-- Performing tests specific to dune-curvilineargeometry from file /home/fomins/gitwork/hades-github-lspr-ag/dune-curvilineargeometry/cmake/modules/DuneCurvilineargeometryMacros.cmake.
-- Using scripts from /home/fomins/gitwork/hades-github-lspr-ag/dune-common/cmake/scripts for creating doxygen stuff.
-- Adding custom target for config.h generation
--
-- The following OPTIONAL packages have been found:
* MPI
* PkgConfig
* BLAS
* Threads
* LAPACK
* Inkscape
-- The following REQUIRED packages have been found:
* dune-common
* dune-geometry
-- The following OPTIONAL packages have not been found:
* LATEX
* UnixCommands
* Doxygen
* GMP
-- Configuring done
-- Generating done
-- Build files have been written to: /home/fomins/gitwork/hades-github-lspr-ag/dune-curvilineargeometry/build-cmake
--- calling make for dune-curvilineargeometry ---
build directory: build-cmake
make
Linking CXX executable dune_curvilineargeometry
[ 20%] Built target dune_curvilineargeometry
Linking CXX executable test_curvilinearelementinterpolation
[ 40%] Built target test_curvilinearelementinterpolation
Linking CXX executable test_curvilineargeometry
[ 60%] Built target test_curvilineargeometry
Linking CXX executable test_polynomial
[ 80%] Built target test_polynomial
Linking CXX executable test_recursiveinterpolationintegration
[100%] Built target test_recursiveinterpolationintegration
--- dune-curvilineargeometry done ---
--- calling all for dune-istl ---
--- calling vcsetup for dune-istl ---
--- calling autogen for dune-istl ---
Skipping dune-autogen because of CMake
--- calling configure for dune-istl ---
----- using default flags $CONFIGURE_FLAGS from /home/fomins/gitwork/hades-github-lspr-ag/af.debian7.lsprag.cmakebuild.minimalistic.opts -----
CXX=mpicxx CC=mpicc cmake -DCMAKE_MODULE_PATH="" -DUSE_MPI=ON "-Ddune-common_DIR=/home/fomins/gitwork/hades-github-lspr-ag/dune-common/build-cmake" CXXFLAGS="-Wall -pedantic -O0 -g2" -DPARMETIS_ROOT=/opt/extlib/parmetis/4.0.3/openmpi/1.8.1/gcc/4.9.0 -DCMAKE_PREFIX_PATH="/opt/extlib/boost/1.55.0/gcc/4.9.0;/opt/extlib/parmetis/4.0.3/openmpi/1.8.1/gcc/4.9.0;/opt/extlib/metis/5.1.0/gcc/4.9.0;" -DDUNE_GRID_EXPERIMENTAL_GRID_EXTENSIONS:BOOL=TRUE "/home/fomins/gitwork/hades-github-lspr-ag/dune-istl"
-- The C compiler identification is GNU 4.9.0
-- The CXX compiler identification is GNU 4.9.0
-- Check for working C compiler: /opt/extlib/openmpi/1.8.1/gcc/4.9.0/bin/mpicc
-- Check for working C compiler: /opt/extlib/openmpi/1.8.1/gcc/4.9.0/bin/mpicc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working CXX compiler: /opt/extlib/openmpi/1.8.1/gcc/4.9.0/bin/mpicxx
-- Check for working CXX compiler: /opt/extlib/openmpi/1.8.1/gcc/4.9.0/bin/mpicxx -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Dependencies for dune-istl: dune-common (>= 2.4)
-- The Fortran compiler identification is GNU
-- Check for working Fortran compiler: /opt/extlib/gcc/4.9.0/gcc/4.9.0/bin/gfortran
-- Check for working Fortran compiler: /opt/extlib/gcc/4.9.0/gcc/4.9.0/bin/gfortran -- works
-- Detecting Fortran compiler ABI info
-- Detecting Fortran compiler ABI info - done
-- Checking whether /opt/extlib/gcc/4.9.0/gcc/4.9.0/bin/gfortran supports Fortran 90
-- Checking whether /opt/extlib/gcc/4.9.0/gcc/4.9.0/bin/gfortran supports Fortran 90 -- yes
-- Checking to see if CXX compiler accepts flag -std=c++11
-- Checking to see if CXX compiler accepts flag -std=c++11 - yes
-- Performing Test HAVE_NULLPTR
-- Performing Test HAVE_NULLPTR - Success
-- Performing Test HAS_ATTRIBUTE_UNUSED
-- Performing Test HAS_ATTRIBUTE_UNUSED - Success
-- Performing Test HAS_ATTRIBUTE_DEPRECATED
-- Performing Test HAS_ATTRIBUTE_DEPRECATED - Success
-- Performing Test HAS_ATTRIBUTE_DEPRECATED_MSG
-- Performing Test HAS_ATTRIBUTE_DEPRECATED_MSG - Success
-- Performing Test HAVE_CONSTEXPR
-- Performing Test HAVE_CONSTEXPR - Success
-- Performing Test HAVE_KEYWORD_FINAL
-- Performing Test HAVE_KEYWORD_FINAL - Success
-- Performing Test HAVE_RANGE_BASED_FOR
-- Performing Test HAVE_RANGE_BASED_FOR - Success
-- Performing Test HAVE_NOEXCEPT_SPECIFIER
-- Performing Test HAVE_NOEXCEPT_SPECIFIER - Success
-- Performing Test HAVE_CXA_DEMANGLE
-- Performing Test HAVE_CXA_DEMANGLE - Success
-- Looking for malloc.h
-- Looking for malloc.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for C++ include memory
-- Looking for C++ include memory - found
-- Found MPI_C: /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/lib/libmpi.so
-- Found MPI_CXX: /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/lib/libmpi_cxx.so;/home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/lib/libmpi.so
-- Found MPI_Fortran: /home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/lib/libmpi_usempi.so;/home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/lib/libmpi_mpifh.so;/home/fomins/extlib/openmpi/1.8.1/gcc/4.9.0/lib/libmpi.so
-- Looking for include file pthread.h
-- Looking for include file pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - found
-- Found Threads: TRUE
-- Looking for MPI_Finalized
-- Looking for MPI_Finalized - found
-- Performing Test MPI_VERSION_SUPPORTED
-- Performing Test MPI_VERSION_SUPPORTED - Success
-- Detecting Fortran/C Interface
-- Detecting Fortran/C Interface - Found GLOBAL and MODULE mangling
-- Verifying Fortran/CXX Compiler Compatibility
-- Verifying Fortran/CXX Compiler Compatibility - Success
-- I could not find the latex2html command.
-- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE)
-- Found PkgConfig: /usr/bin/pkg-config (found version "0.26")
-- Performing tests specific to dune-common from file /home/fomins/gitwork/hades-github-lspr-ag/dune-common/cmake/modules/DuneCommonMacros.cmake.
-- Looking for Fortran dgemm
-- Looking for Fortran dgemm - found
-- A library with BLAS API found.
-- Looking for Fortran cheev
-- Looking for Fortran cheev - found
-- A library with LAPACK API found.
-- Looking for C++ include gmpxx.h
-- Looking for C++ include gmpxx.h - not found
-- Could NOT find GMP (missing: GMP_INCLUDE_DIR GMP_LIB GMPXX_LIB GMP_HEADER_WORKS GMPXX_LIB_WORKS)
-- Looking for sys/mman.h
-- Looking for sys/mman.h - found
-- Performing Test HAVE_MPROTECT
-- Performing Test HAVE_MPROTECT - Success
-- Setting dune-common_INCLUDE_DIRS=/home/fomins/gitwork/hades-github-lspr-ag/dune-common
-- Setting dune-common_LIBRARIES=dunecommon
-- Performing tests specific to dune-istl from file /home/fomins/gitwork/hades-github-lspr-ag/dune-istl/cmake/modules/DuneIstlMacros.cmake.
-- Boost version: 1.55.0
-- Boost version: 1.55.0
-- Skipping check for Boost::FUSION as Boost is not available.
-- Looking for metis.h
-- Looking for metis.h - found
-- Looking for METIS_PartGraphKway
-- Looking for METIS_PartGraphKway - found
-- Found METIS: /opt/extlib/parmetis/4.0.3/openmpi/1.8.1/gcc/4.9.0/include
-- Looking for parmetis.h
-- Looking for parmetis.h - found
-- Looking for parmetis_v3_partkway
-- Looking for parmetis_v3_partkway - found
-- Found ParMETIS: /opt/extlib/parmetis/4.0.3/openmpi/1.8.1/gcc/4.9.0/include
-- Performing Test HAVE_MEM_USAGE_T_EXPANSIONS
-- Performing Test HAVE_MEM_USAGE_T_EXPANSIONS - Failed
-- Performing Test SUPERLU_MIN_VERSION_4_3
-- Performing Test SUPERLU_MIN_VERSION_4_3 - Failed
-- Could NOT find SuperLU (missing: SUPERLU_INCLUDE_DIR SUPERLU_LIBRARY)
-- Found UMFPack: /usr/include/suitesparse
-- Using scripts from /home/fomins/gitwork/hades-github-lspr-ag/dune-common/cmake/scripts for creating doxygen stuff.
-- Adding custom target for config.h generation
--
-- The following OPTIONAL packages have been found:
* PkgConfig
* LAPACK
* Inkscape
* Boost
* METIS
* ParMETIS
* UMFPack
* MPI
* Threads
-- The following REQUIRED packages have been found:
* dune-common
* BLAS
-- The following OPTIONAL packages have not been found:
* LATEX
* UnixCommands
* Doxygen
* GMP
* BoostFusion
* SuperLU
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
DUNE_GRID_EXPERIMENTAL_GRID_EXTENSIONS
USE_MPI
-- Build files have been written to: /home/fomins/gitwork/hades-github-lspr-ag/dune-istl/build-cmake
--- calling make for dune-istl ---
build directory: build-cmake
make
Scanning dependencies of target example
[100%] Building CXX object dune/istl/tutorial/CMakeFiles/example.dir/example.cc.o
Linking CXX executable example
[100%] Built target example
--- dune-istl done ---
--- calling all for dune-curvilineargrid ---
--- calling vcsetup for dune-curvilineargrid ---
--- calling autogen for dune-curvilineargrid ---
Skipping dune-autogen because of CMake
--- calling configure for dune-curvilineargrid ---
----- using default flags $CONFIGURE_FLAGS from /home/fomins/gitwork/hades-github-lspr-ag/af.debian7.lsprag.cmakebuild.minimalistic.opts -----
/home/fomins/gitwork/hades-github-lspr-ag/dune-geometry/lib/dunegeometryam2cmake.lib for converting options does not exist
/home/fomins/gitwork/hades-github-lspr-ag/dune-curvilineargeometry/lib/dunecurvilineargeometryam2cmake.lib for converting options does not exist
/home/fomins/gitwork/hades-github-lspr-ag/dune-curvilineargrid/lib/dunecurvilineargridam2cmake.lib for converting options does not exist
CXX=mpicxx CC=mpicc cmake -DCMAKE_MODULE_PATH="" -DUSE_MPI=ON "-Ddune-common_DIR=/home/fomins/gitwork/hades-github-lspr-ag/dune-common/build-cmake" "-Ddune-geometry_DIR=/home/fomins/gitwork/hades-github-lspr-ag/dune-geometry/build-cmake" "-Ddune-curvilineargeometry_DIR=/home/fomins/gitwork/hades-github-lspr-ag/dune-curvilineargeometry/build-cmake" -DENABLE_EXPERIMENTAL_GRID_EXTENSIONS:BOOL=TRUE "-Ddune-grid_DIR=/home/fomins/gitwork/hades-github-lspr-ag/dune-grid/build-cmake" "-Ddune-alugrid_DIR=/home/fomins/gitwork/hades-github-lspr-ag/dune-alugrid/build-cmake" CXXFLAGS="-Wall -pedantic -O0 -g2" -DPARMETIS_ROOT=/opt/extlib/parmetis/4.0.3/openmpi/1.8.1/gcc/4.9.0 -DCMAKE_PREFIX_PATH="/opt/extlib/boost/1.55.0/gcc/4.9.0;/opt/extlib/parmetis/4.0.3/openmpi/1.8.1/gcc/4.9.0;/opt/extlib/metis/5.1.0/gcc/4.9.0;" -DDUNE_GRID_EXPERIMENTAL_GRID_EXTENSIONS:BOOL=TRUE "/home/fomins/gitwork/hades-github-lspr-ag/dune-curvilineargrid"
-- Dependencies for dune-curvilineargrid: dune-common;dune-geometry;dune-curvilineargeometry;dune-grid;dune-alugrid
-- Dependencies for dune-geometry: dune-common (>= 2.4)
-- Dependencies for dune-curvilineargeometry: dune-common;dune-geometry
-- Dependencies for dune-grid: dune-common (>= 2.4);dune-geometry (>= 2.4)
-- Dependencies for dune-alugrid: dune-grid (>= 2.3)
-- Dependencies for dune-grid: dune-common (>= 2.4);dune-geometry (>= 2.4)
-- Dependencies for dune-geometry: dune-common (>= 2.4)
-- Dependencies for dune-geometry: dune-common (>= 2.4)
-- Dependencies for dune-geometry: dune-common (>= 2.4)
-- I could not find the latex2html command.
-- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE)
-- Performing tests specific to dune-common from file /home/fomins/gitwork/hades-github-lspr-ag/dune-common/cmake/modules/DuneCommonMacros.cmake.
-- A library with BLAS API found.
-- A library with LAPACK API found.
-- Could NOT find GMP (missing: GMP_INCLUDE_DIR GMP_LIB GMPXX_LIB GMP_HEADER_WORKS GMPXX_LIB_WORKS)
-- Setting dune-common_INCLUDE_DIRS=/home/fomins/gitwork/hades-github-lspr-ag/dune-common
-- Setting dune-common_LIBRARIES=dunecommon
-- Setting dune-geometry_INCLUDE_DIRS=/home/fomins/gitwork/hades-github-lspr-ag/dune-geometry
-- Setting dune-geometry_LIBRARIES=dunegeometry
-- Performing tests specific to dune-grid from file /home/fomins/gitwork/hades-github-lspr-ag/dune-grid/cmake/modules/DuneGridMacros.cmake.
-- checking for module 'alugrid'
-- package 'alugrid' not found
-- checking for module 'alugrid'
-- package 'alugrid' not found
-- Could NOT find ALUGrid (missing: ALUGRID_VERSION ALUGRID_INCLUDE_PATH ALUGRID_LIB ALUGRID_LIB_PATH ALULIB_FUNCTIONAL HAVE_ALUGRID_SERIAL_H)
CMake Warning at /home/fomins/gitwork/hades-github-lspr-ag/dune-grid/cmake/modules/UseUG.cmake:27 (find_package):
Could not find a package configuration file provided by "UG" (requested
version 3.11.0) with any of the following names:
UGConfig.cmake
ug-config.cmake
Add the installation prefix of "UG" to CMAKE_PREFIX_PATH or set "UG_DIR" to
a directory containing one of the above files. If "UG" provides a separate
development package or SDK, be sure it has been installed.
Call Stack (most recent call first):
/home/fomins/gitwork/hades-github-lspr-ag/dune-grid/cmake/modules/DuneGridMacros.cmake:11 (include)
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/cmake/modules/DuneMacros.cmake:505 (include)
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/cmake/modules/DuneMacros.cmake:634 (dune_process_dependency_macros)
CMakeLists.txt:24 (dune_project)
-- Could NOT find UG (missing: UG_DIR HAVE_UG)
-- Could NOT find Grape (missing: GRAPE_INCLUDE_DIR GRAPE_LIBRARY _GRAPE_LIB_FUNCTIONAL _GRAPE_HEADER_USABLE)
-- checking for one of the modules 'psurface'
-- checking for module 'psurface'
-- package 'psurface' not found
-- Could NOT find psurface (missing: PSURFACE_INCLUDE_DIR PSURFACE_LIBRARY)
-- Could NOT find AmiraMesh (missing: AMIRAMESH_INCLUDE_DIR AMIRAMESH_LIBRARY)
-- Setting dune-grid_INCLUDE_DIRS=/home/fomins/gitwork/hades-github-lspr-ag/dune-grid
-- Setting dune-grid_LIBRARIES=dunegrid
-- Performing tests specific to dune-alugrid from file /home/fomins/gitwork/hades-github-lspr-ag/dune-alugrid/cmake/modules/DuneAlugridMacros.cmake.
-- Could NOT find SIONlib (missing: SIONLIB_INCLUDE_DIR SIONLIB_LIBRARY SIONLIB_HEADER_USABLE SIONLIB_LIB_WORKS SIONLIB_LIB_SIONSER_WORKS)
-- Could NOT find DLMalloc (missing: DLMALLOC_INCLUDE_DIR DLMALLOC_SOURCE_USABLE)
Zoltan Dir: ZOLTAN_INCLUDE_DIR-NOTFOUND
-- Could NOT find ZOLTAN (missing: ZOLTAN_INCLUDE_DIR ZOLTAN_LIBRARY ZOLTAN_HEADER_USABLE)
CMake Warning (dev) at /home/fomins/gitwork/hades-github-lspr-ag/dune-alugrid/cmake/modules/DuneAlugridMacros.cmake:49 (message):
TODO: Improve module test.
Call Stack (most recent call first):
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/cmake/modules/DuneMacros.cmake:505 (include)
/home/fomins/gitwork/hades-github-lspr-ag/dune-common/cmake/modules/DuneMacros.cmake:634 (dune_process_dependency_macros)
CMakeLists.txt:24 (dune_project)
This warning is for project developers. Use -Wno-dev to suppress it.
-- Setting dune-alugrid_INCLUDE_DIRS=/home/fomins/gitwork/hades-github-lspr-ag/dune-alugrid
-- Setting dune-alugrid_LIBRARIES=dunealugrid
-- Performing tests specific to dune-curvilineargeometry from file /home/fomins/gitwork/hades-github-lspr-ag/dune-curvilineargeometry/cmake/modules/DuneCurvilineargeometryMacros.cmake.
-- Setting dune-curvilineargeometry_INCLUDE_DIRS=/home/fomins/gitwork/hades-github-lspr-ag/dune-curvilineargeometry
-- Performing tests specific to dune-curvilineargrid from file /home/fomins/gitwork/hades-github-lspr-ag/dune-curvilineargrid/cmake/modules/DuneCurvilineargridMacros.cmake.
-- Using scripts from /home/fomins/gitwork/hades-github-lspr-ag/dune-common/cmake/scripts for creating doxygen stuff.
-- Adding custom target for config.h generation
--
-- The following features have been enabled:
* Experimental grid extensions , Enables additional grid features.
-- The following OPTIONAL packages have been found:
* MPI
* PkgConfig
* BLAS
* Threads
* LAPACK
* Inkscape
* X11
* OpenGL
* ZLIB
-- The following REQUIRED packages have been found:
* dune-common
* dune-geometry
* dune-curvilineargeometry
* dune-grid
* dune-alugrid
-- The following OPTIONAL packages have not been found:
* LATEX
* UnixCommands
* Doxygen
* GMP
* ALUGrid
* Alberta
* UG (required version >= 3.11.0)
* Grape
* Psurface
* AmiraMesh
* SIONlib
* DLMalloc
* ZOLTAN
-- Configuring done
-- Generating done
-- Build files have been written to: /home/fomins/gitwork/hades-github-lspr-ag/dune-curvilineargrid/build-cmake
--- calling make for dune-curvilineargrid ---
build directory: build-cmake
make
Linking CXX executable dune_curvilineargrid
[ 50%] Built target dune_curvilineargrid
[100%] Building CXX object dune/curvilineargrid/io/file/test/CMakeFiles/curvilineargmshtest.dir/curvilineargmshtest.cc.o
In file included from /home/fomins/gitwork/hades-github-lspr-ag/dune-curvilineargrid/dune/curvilineargrid/io/file/curvilineargmshreader.hh:42:0,
from /home/fomins/gitwork/hades-github-lspr-ag/dune-curvilineargrid/dune/curvilineargrid/io/file/test/curvilineargmshtest.cc:43:
/home/fomins/gitwork/hades-github-lspr-ag/dune-curvilineargrid/dune/curvilineargrid/curvilineargrid/gridfactory.hh:45:22: fatal error: parmetis.h: No such file or directory
#include <parmetis.h>
^
compilation terminated.
make[2]: *** [dune/curvilineargrid/io/file/test/CMakeFiles/curvilineargmshtest.dir/curvilineargmshtest.cc.o] Error 1
make[1]: *** [dune/curvilineargrid/io/file/test/CMakeFiles/curvilineargmshtest.dir/all] Error 2
make: *** [all] Error 2
--- Failed to build dune-curvilineargrid ---
Terminating dunecontrol due to previous errors!
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