[Dune] Dune on cygwin

Thu Feb 5 13:55:42 CET 2015

Jo, Oliver-
Complete log is:
$ make check
Making check in cmake
make[1]: Entering directory
'C:/LocalApp/local/dune2.3.1/dune-common-2.3.1/cmake'
Making check in modules
make[2]: Entering directory
'C:/LocalApp/local/dune2.3.1/dune-common-2.3.1/cmake/modules'
make[2]: Nothing to be done for 'check'.
make[2]: Leaving directory
'C:/LocalApp/local/dune2.3.1/dune-common-2.3.1/cmake/modules'
Making check in pkg
make[2]: Entering directory
'C:/LocalApp/local/dune2.3.1/dune-common-2.3.1/cmake/pkg'
make[2]: Nothing to be done for 'check'.
make[2]: Leaving directory
'C:/LocalApp/local/dune2.3.1/dune-common-2.3.1/cmake/pkg'
Making check in scripts
make[2]: Entering directory
'C:/LocalApp/local/dune2.3.1/dune-common-2.3.1/cmake/scripts'
make[2]: Nothing to be done for 'check'.
make[2]: Leaving directory
'C:/LocalApp/local/dune2.3.1/dune-common-2.3.1/cmake/scripts'
make[2]: Entering directory
'C:/LocalApp/local/dune2.3.1/dune-common-2.3.1/cmake'
make[2]: Nothing to be done for 'check-am'.
make[2]: Leaving directory
'C:/LocalApp/local/dune2.3.1/dune-common-2.3.1/cmake'
make[1]: Leaving directory
'C:/LocalApp/local/dune2.3.1/dune-common-2.3.1/cmake'
Making check in dune
make[1]: Entering directory
'C:/LocalApp/local/dune2.3.1/dune-common-2.3.1/dune'
Making check in common
make[2]: Entering directory
'C:/LocalApp/local/dune2.3.1/dune-common-2.3.1/dune/common'
Making check in .
make[3]: Entering directory
'C:/LocalApp/local/dune2.3.1/dune-common-2.3.1/dune/common'
C:/localapp/local/cygwin64/bin/sh.exe ../../libtool  --tag=CXX
--mode=compile g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../..  -I../..   -g -O2
-Wall -MT debugallocator.lo -MD -MP -MF .deps/debugallocator.Tpo -c -o
debugallocator.lo debugallocator.cc
libtool: compile:  g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../.. -I../.. -g
-O2 -Wall -MT debugallocator.lo -MD -MP -MF .deps/debugallocator.Tpo -c
debugallocator.cc -o debugallocator.o
mv -f .deps/debugallocator.Tpo .deps/debugallocator.Plo
C:/localapp/local/cygwin64/bin/sh.exe ../../libtool  --tag=CXX
--mode=compile g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../..  -I../..   -g -O2
-Wall -MT fmatrixev.lo -MD -MP -MF .deps/fmatrixev.Tpo -c -o fmatrixev.lo
fmatrixev.cc
libtool: compile:  g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../.. -I../.. -g
-O2 -Wall -MT fmatrixev.lo -MD -MP -MF .deps/fmatrixev.Tpo -c fmatrixev.cc
-o fmatrixev.o
mv -f .deps/fmatrixev.Tpo .deps/fmatrixev.Plo
C:/localapp/local/cygwin64/bin/sh.exe ../../libtool  --tag=CXX
--mode=compile g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../..  -I../..   -g -O2
-Wall -MT dynmatrixev.lo -MD -MP -MF .deps/dynmatrixev.Tpo -c -o
dynmatrixev.lo dynmatrixev.cc
libtool: compile:  g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../.. -I../.. -g
-O2 -Wall -MT dynmatrixev.lo -MD -MP -MF .deps/dynmatrixev.Tpo -c
dynmatrixev.cc -o dynmatrixev.o
mv -f .deps/dynmatrixev.Tpo .deps/dynmatrixev.Plo
C:/localapp/local/cygwin64/bin/sh.exe ../../libtool  --tag=CXX
--mode=compile g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../..  -I../..   -g -O2
-Wall -MT ios_state.lo -MD -MP -MF .deps/ios_state.Tpo -c -o ios_state.lo
ios_state.cc
libtool: compile:  g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../.. -I../.. -g
-O2 -Wall -MT ios_state.lo -MD -MP -MF .deps/ios_state.Tpo -c ios_state.cc
-o ios_state.o
mv -f .deps/ios_state.Tpo .deps/ios_state.Plo
C:/localapp/local/cygwin64/bin/sh.exe ../../libtool  --tag=CXX
--mode=compile g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../..  -I../..   -g -O2
-Wall -MT parametertree.lo -MD -MP -MF .deps/parametertree.Tpo -c -o
parametertree.lo parametertree.cc
libtool: compile:  g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../.. -I../.. -g
-O2 -Wall -MT parametertree.lo -MD -MP -MF .deps/parametertree.Tpo -c
parametertree.cc -o parametertree.o
mv -f .deps/parametertree.Tpo .deps/parametertree.Plo
C:/localapp/local/cygwin64/bin/sh.exe ../../libtool  --tag=CXX
--mode=compile g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../..  -I../..   -g -O2
-Wall -MT parametertreeparser.lo -MD -MP -MF .deps/parametertreeparser.Tpo
-c -o parametertreeparser.lo parametertreeparser.cc
libtool: compile:  g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../.. -I../.. -g
-O2 -Wall -MT parametertreeparser.lo -MD -MP -MF
.deps/parametertreeparser.Tpo -c parametertreeparser.cc -o
parametertreeparser.o
mv -f .deps/parametertreeparser.Tpo .deps/parametertreeparser.Plo
C:/localapp/local/cygwin64/bin/sh.exe ../../libtool  --tag=CXX
--mode=compile g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../..  -I../..   -g -O2
-Wall -MT path.lo -MD -MP -MF .deps/path.Tpo -c -o path.lo path.cc
libtool: compile:  g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../.. -I../.. -g
-O2 -Wall -MT path.lo -MD -MP -MF .deps/path.Tpo -c path.cc -o path.o
mv -f .deps/path.Tpo .deps/path.Plo
C:/localapp/local/cygwin64/bin/sh.exe ../../libtool  --tag=CXX
--mode=compile g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../..  -I../..   -g -O2
-Wall -MT exceptions.lo -MD -MP -MF .deps/exceptions.Tpo -c -o
exceptions.lo exceptions.cc
libtool: compile:  g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../.. -I../.. -g
-O2 -Wall -MT exceptions.lo -MD -MP -MF .deps/exceptions.Tpo -c
exceptions.cc -o exceptions.o
mv -f .deps/exceptions.Tpo .deps/exceptions.Plo
C:/localapp/local/cygwin64/bin/sh.exe ../../libtool  --tag=CXX
--mode=compile g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../..  -I../..   -g -O2
-Wall -MT stdstreams.lo -MD -MP -MF .deps/stdstreams.Tpo -c -o
stdstreams.lo stdstreams.cc
libtool: compile:  g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../.. -I../.. -g
-O2 -Wall -MT stdstreams.lo -MD -MP -MF .deps/stdstreams.Tpo -c
stdstreams.cc -o stdstreams.o
mv -f .deps/stdstreams.Tpo .deps/stdstreams.Plo
C:/localapp/local/cygwin64/bin/sh.exe ../../libtool  --tag=CXX
--mode=link g++ -std=c++11  -g -O2 -Wall   -o libcommon.la
debugallocator.lo fmatrixev.lo dynmatrixev.lo ios_state.lo parametertree.lo
parametertreeparser.lo path.lo exceptions.lo stdstreams.lo   -lm
-LC:/LocalApp/local/MinGW64/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/4.9.2
-LC:/LocalApp/local/MinGW64/mingw64/bin/../lib/gcc
-LC:/LocalApp/local/MinGW64/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/4.9.2/../../../../x86_64-w64-mingw32/lib/../lib
-LC:/LocalApp/local/MinGW64/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/4.9.2/../../../../lib
-LC:/LocalApp/local/MinGW64/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/4.9.2/../../../../x86_64-w64-mingw32/lib
-LC:/LocalApp/local/MinGW64/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/4.9.2/../../..
-lgfortran -lmingw32 -lmoldname -lmingwex -lmsvcrt -lquadmath -lm -lpthread
-ladvapi32 -lshell32 -luser32 -liconv -lm
libtool: link: rm -fr  .libs/libcommon.a .libs/libcommon.la
libtool: link: ar cru .libs/libcommon.a  debugallocator.o fmatrixev.o
dynmatrixev.o ios_state.o parametertree.o parametertreeparser.o path.o
exceptions.o stdstreams.o
libtool: link: ranlib .libs/libcommon.a
libtool: link: ( cd ".libs" && rm -f "libcommon.la" && ln -s "../
libcommon.la" "libcommon.la" )
make[3]: Leaving directory
'C:/LocalApp/local/dune2.3.1/dune-common-2.3.1/dune/common'
Making check in test
make[3]: Entering directory
'C:/LocalApp/local/dune2.3.1/dune-common-2.3.1/dune/common/test'
C:/LocalApp/local/MinGW64/mingw64/bin/make  arraylisttest.exe arraytest.exe
bigunsignedinttest.exe bitsetvectortest.exe check_fvector_size.exe
conversiontest.exe diagonalmatrixtest.exe dynmatrixtest.exe
dynvectortest.exe eigenvaluestest.exe enumsettest.exe fassigntest.exe
fmatrixtest.exe fvectortest.exe gcdlcmtest.exe iteratorfacadetest.exe
iteratorfacadetest2.exe lrutest.exe mpicollectivecommunication.exe
mpiguardtest.exe mpihelpertest.exe mpihelpertest2.exe nullptr-test.exe
pathtest.exe parametertreetest.exe poolallocatortest.exe
shared_ptrtest_config.exe shared_ptrtest_dune.exe singletontest.exe
static_assert_test.exe streamtest.exe testdebugallocator.exe
testdebugallocator_fail1.exe testdebugallocator_fail2.exe
testdebugallocator_fail3.exe testdebugallocator_fail4.exe
testdebugallocator_fail5.exe testfassign1.exe testfassign2.exe
testfassign3.exe testfassign4.exe testfassign_fail1.exe
testfassign_fail2.exe testfassign_fail3.exe testfassign_fail4.exe
testfassign_fail5.exe testfassign_fail6.exe testfconstruct.exe
testfloatcmp.exe tuplestest_dune.exe tuplestest_std.exe tuplestest_tr1.exe
tupleutilitytest.exe typetraitstest.exe utilitytest.exe
make[4]: Entering directory
'C:/LocalApp/local/dune2.3.1/dune-common-2.3.1/dune/common/test'
g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../../..  -I../../..   -g -O2 -Wall
-MT arraylisttest.o -MD -MP -MF .deps/arraylisttest.Tpo -c -o
arraylisttest.o arraylisttest.cc
mv -f .deps/arraylisttest.Tpo .deps/arraylisttest.Po
C:/localapp/local/cygwin64/bin/sh.exe ../../../libtool  --tag=CXX
--mode=link g++ -std=c++11  -g -O2 -Wall   -o arraylisttest.exe
arraylisttest.o ../../../lib/libdunecommon.la -lm
libtool: link: g++ -std=c++11 -g -O2 -Wall -o arraylisttest.exe
arraylisttest.o  ../../../lib/.libs/libdunecommon.a
-LC:/LocalApp/local/MinGW64/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/4.9.2
-LC:/LocalApp/local/MinGW64/mingw64/bin/../lib/gcc
-LC:/LocalApp/local/MinGW64/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/4.9.2/../../../../x86_64-w64-mingw32/lib/../lib
-LC:/LocalApp/local/MinGW64/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/4.9.2/../../../../lib
-LC:/LocalApp/local/MinGW64/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/4.9.2/../../../../x86_64-w64-mingw32/lib
-LC:/LocalApp/local/MinGW64/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/4.9.2/../../..
-lgfortran -lmingw32 -lmoldname -lmingwex -lmsvcrt -lquadmath -lpthread
-liconv
arraylisttest.o: In function `operator<< <std::char_traits<char> >':
/usr/lib/gcc/x86_64-pc-cygwin/4.9.2/include/c++/ostream:535: undefined
reference to `std::basic_ostream<char, std::char_traits<char> >&
std::__ostream_insert<char, std::char_traits<char>
>(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc/x86_64-pc-cygwin/4.9.2/include/c++/ostream:535:(.text+0x181):
relocation truncated to fit: R_X86_64_PC32 against undefined symbol
`std::basic_ostream<char, std::char_traits<char> >&
std::__ostream_insert<char, std::char_traits<char>
>(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc/x86_64-pc-cygwin/4.9.2/include/c++/ostream:535: undefined
reference to `std::basic_ostream<char, std::char_traits<char> >&
std::__ostream_insert<char, std::char_traits<char>
>(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc/x86_64-pc-cygwin/4.9.2/include/c++/ostream:535:(.text+0x19a):
relocation truncated to fit: R_X86_64_PC32 against undefined symbol
`std::basic_ostream<char, std::char_traits<char> >&
std::__ostream_insert<char, std::char_traits<char>
>(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc/x86_64-pc-cygwin/4.9.2/include/c++/ostream:535: undefined
reference to `std::basic_ostream<char, std::char_traits<char> >&
std::__ostream_insert<char, std::char_traits<char>
>(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc/x86_64-pc-cygwin/4.9.2/include/c++/ostream:535:(.text+0x1b3):
relocation truncated to fit: R_X86_64_PC32 against undefined symbol
`std::basic_ostream<char, std::char_traits<char> >&
std::__ostream_insert<char, std::char_traits<char>
>(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc/x86_64-pc-cygwin/4.9.2/include/c++/ostream:535: undefined
reference to `std::basic_ostream<char, std::char_traits<char> >&
std::__ostream_insert<char, std::char_traits<char>
>(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc/x86_64-pc-cygwin/4.9.2/include/c++/ostream:535:(.text+0x377):
relocation truncated to fit: R_X86_64_PC32 against undefined symbol
`std::basic_ostream<char, std::char_traits<char> >&
std::__ostream_insert<char, std::char_traits<char>
>(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc/x86_64-pc-cygwin/4.9.2/include/c++/ostream:535: undefined
reference to `std::basic_ostream<char, std::char_traits<char> >&
std::__ostream_insert<char, std::char_traits<char>
>(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc/x86_64-pc-cygwin/4.9.2/include/c++/ostream:535:(.text+0x390):
relocation truncated to fit: R_X86_64_PC32 against undefined symbol
`std::basic_ostream<char, std::char_traits<char> >&
std::__ostream_insert<char, std::char_traits<char>
>(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
arraylisttest.o:/usr/lib/gcc/x86_64-pc-cygwin/4.9.2/include/c++/ostream:535:
more undefined references to `std::basic_ostream<char,
std::char_traits<char> >& std::__ostream_insert<char,
std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char>
>&, char const*, long)' follow
arraylisttest.o: In function `operator<< <std::char_traits<char> >':
/usr/lib/gcc/x86_64-pc-cygwin/4.9.2/include/c++/ostream:535:(.text+0x3a9):
relocation truncated to fit: R_X86_64_PC32 against undefined symbol
`std::basic_ostream<char, std::char_traits<char> >&
std::__ostream_insert<char, std::char_traits<char>
>(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc/x86_64-pc-cygwin/4.9.2/include/c++/ostream:535:(.text+0x45a):
relocation truncated to fit: R_X86_64_PC32 against undefined symbol
`std::basic_ostream<char, std::char_traits<char> >&
std::__ostream_insert<char, std::char_traits<char>
>(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc/x86_64-pc-cygwin/4.9.2/include/c++/ostream:535:(.text+0x473):
relocation truncated to fit: R_X86_64_PC32 against undefined symbol
`std::basic_ostream<char, std::char_traits<char> >&
std::__ostream_insert<char, std::char_traits<char>
>(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc/x86_64-pc-cygwin/4.9.2/include/c++/ostream:535:(.text+0x48c):
relocation truncated to fit: R_X86_64_PC32 against undefined symbol
`std::basic_ostream<char, std::char_traits<char> >&
std::__ostream_insert<char, std::char_traits<char>
>(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc/x86_64-pc-cygwin/4.9.2/include/c++/ostream:535:(.text+0x529):
relocation truncated to fit: R_X86_64_PC32 against undefined symbol
`std::basic_ostream<char, std::char_traits<char> >&
std::__ostream_insert<char, std::char_traits<char>
>(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc/x86_64-pc-cygwin/4.9.2/include/c++/ostream:535:(.text+0x542):
additional relocation overflows omitted from the output
/usr/lib/gcc/x86_64-pc-cygwin/4.9.2/../../../../lib/libcygwin.a(_cygwin_crt0_common.o):_cygwin_crt0_common.cc:(.data+0x0):
undefined reference to `operator new(unsigned long)'
collect2: error: ld returned 1 exit status
makefile:1285: recipe for target 'arraylisttest.exe' failed
make[4]: *** [arraylisttest.exe] Error 1
make[4]: Leaving directory
'C:/LocalApp/local/dune2.3.1/dune-common-2.3.1/dune/common/test'
makefile:2721: recipe for target 'check-am' failed
make[3]: *** [check-am] Error 2
make[3]: Leaving directory
'C:/LocalApp/local/dune2.3.1/dune-common-2.3.1/dune/common/test'
makefile:699: recipe for target 'check-recursive' failed
make[2]: *** [check-recursive] Error 1
make[2]: Leaving directory
'C:/LocalApp/local/dune2.3.1/dune-common-2.3.1/dune/common'
makefile:468: recipe for target 'check-recursive' failed
make[1]: *** [check-recursive] Error 1
make[1]: Leaving directory
'C:/LocalApp/local/dune2.3.1/dune-common-2.3.1/dune'
makefile:630: recipe for target 'check-recursive' failed
make: *** [check-recursive] Error 1

On Wed, Feb 4, 2015 at 9:12 PM, Oliver Sander <sander at igpm.rwth-aachen.de>
wrote:

> Am 04.02.2015 um 21:36 schrieb Jö Fahlke:
> > Am Wed,  4. Feb 2015, 19:21:24 +0000 schrieb Ganesh Diwan:
> >> I don't think it is able to perform this test successfully, here is the
> >> output:
> >>
> >> Thanks
> >> Ganesh
> >>
> >>
> /usr/lib/gcc/x86_64-pc-cygwin/4.9.2/../../../../lib/libcygwin.a(_cygwin_crt0_common.o):_cygwin_crt0_common.cc:(.data+0x0):
> >> undefined reference to `operator new(unsigned long)'
> >> collect2: error: ld returned 1 exit status
> >> makefile:1285: recipe for target 'arraylisttest.exe' failed
> >> make[4]: *** [arraylisttest.exe] Error 1
> >> make[4]: Leaving directory
> >
> > We will probably need some more of the log from before that, in
> particular
> > how the linker was called.
>
> This looks very much like the error from the test for dune-geometry.
>
> >
> > (This looks like the linker was trying to link without the C++ standard
> > library.  Might be that the C-compiler was used for linking instead of
> the
> > C++-compiler.)
>
> This was the first thing that I thought, but his dune-grid config.log
> shows that
> g++ is called instead of gcc (which is correct).  Ganesh, please post the
> complete
> log for the failing arraylisttest.exe.
>
> Plus: Ganesh, can you build an run a simple 'Hello World' programm in c++?
> Something like
>
> #include <iostream>
> int main()
> {
>   std::cout << "Hello world!" << std::endl;
> }
>
> Cheers,
> Oliver
>
>
> >
> > Regards,
> > Jö.
> >
>
>
>
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