[Dune] Strange problem with MPI_Comm ?
Benedikt Oswald
benedikt.oswald at lspr.ch
Fri Mar 27 11:19:02 CET 2015
Hello Marks,
I am still plagued by the installation problem onthe CrayXC30,
namely that I have this same problem, cf. below.
I guess that somehow dunecontrol thinks that MPI is not really here
and thus MPI_Comm is not defined either ?
What do you think ?
Thanks for having a look, Benedikt
/scratch/daint/boswald/gitwork/hades/communicationinterface/globaluniqueindex.hh:101:58:
error: 'MPI_Comm' was not declared in this scope
typedef typename Dune::template CollectiveCommunication<MPI_Comm>
Collective;
^
/scratch/daint/boswald/gitwork/hades/communicationinterface/globaluniqueindex.hh:101:66:
error: template argument 1 is invalid
typedef typename Dune::template CollectiveCommunication<MPI_Comm>
Collective;
^
/scratch/daint/boswald/gitwork/hades/communicationinterface/globaluniqueindex.hh:101:68:
error: 'Collective' in namespace 'Dune' does not name a type
typedef typename Dune::template CollectiveCommunication<MPI_Comm>
Collective;
===========================================
this is what I get from the cmake Cache file on the Cray XC30:
# This is the CMakeCache file.
# For build in directory: /scratch/daint/boswald/gitwork/hades/build-cmake
# It was generated by CMake: /apps/daint/cmake/2.8.12.2/bin/cmake
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# If you do not want to change any of the values, simply exit the editor.
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Am 26/03/15 um 17:00 schrieb Benedikt Oswald:
> Hello Markus, thanks for the help, sorry for the late reply...we are a
> bit under pressure.
> I am right now trying out your suggestions. In fact, the MPI compile
> flags are added in
> the respective cmake file, cf. below, but when I run the compile with
> make VERBOSE=1
> then I see this:
>
> Greetings & thanks, Benedikt
>
>
> aint103 hades/3ddgfd> make VERBOSE=1
> cd /scratch/daint/boswald/gitwork/hades/build-cmake &&
> /apps/daint/cmake/2.8.12.2/bin/cmake
> -H/scratch/daint/boswald/gitwork/hades
> -B/scratch/daint/boswald/gitwork/hades/build-cmake
> --check-build-system CMakeFiles/Makefile.cmake 0
> cd /scratch/daint/boswald/gitwork/hades/build-cmake &&
> /apps/daint/cmake/2.8.12.2/bin/cmake -E cmake_progress_start
> /scratch/daint/boswald/gitwork/hades/build-cmake/CMakeFiles
> /scratch/daint/boswald/gitwork/hades/build-cmake/hades/3ddgfd/CMakeFiles/progress.marks
> cd /scratch/daint/boswald/gitwork/hades/build-cmake && make -f
> CMakeFiles/Makefile2 hades/3ddgfd/all
> make[1]: Entering directory
> `/scratch/daint/boswald/gitwork/hades/build-cmake'
> make -f hades/3ddgfd/CMakeFiles/hades3ddgfd.dir/build.make
> hades/3ddgfd/CMakeFiles/hades3ddgfd.dir/depend
> make[2]: Entering directory
> `/scratch/daint/boswald/gitwork/hades/build-cmake'
> cd /scratch/daint/boswald/gitwork/hades/build-cmake &&
> /apps/daint/cmake/2.8.12.2/bin/cmake -E cmake_depends "Unix Makefiles"
> /scratch/daint/boswald/gitwork/hades
> /scratch/daint/boswald/gitwork/hades/hades/3ddgfd
> /scratch/daint/boswald/gitwork/hades/build-cmake
> /scratch/daint/boswald/gitwork/hades/build-cmake/hades/3ddgfd
> /scratch/daint/boswald/gitwork/hades/build-cmake/hades/3ddgfd/CMakeFiles/hades3ddgfd.dir/DependInfo.cmake
> --color=
> make[2]: Leaving directory
> `/scratch/daint/boswald/gitwork/hades/build-cmake'
> make -f hades/3ddgfd/CMakeFiles/hades3ddgfd.dir/build.make
> hades/3ddgfd/CMakeFiles/hades3ddgfd.dir/build
> make[2]: Entering directory
> `/scratch/daint/boswald/gitwork/hades/build-cmake'
> /apps/daint/cmake/2.8.12.2/bin/cmake -E cmake_progress_report
> /scratch/daint/boswald/gitwork/hades/build-cmake/CMakeFiles 8
> [100%] Building CXX object
> hades/3ddgfd/CMakeFiles/hades3ddgfd.dir/hades3ddgfd.cc.o
> cd /scratch/daint/boswald/gitwork/hades/build-cmake/hades/3ddgfd &&
> /opt/cray/craype/2.2.1/bin/CC -DENABLE_BOOST -DHAVE_CONFIG_H -Wall
> -O2
> -I/users/boswald/extlib/superludist/3.3/cray-mpich/7.1.1/gcc/4.9.2/SRC
> -std=c++11 -I/scratch/daint/boswald/gitwork/hades/build-cmake
> -I/scratch/daint/boswald/gitwork/hades
> -I/scratch/daint/boswald/gitwork/dune-common
> -I/scratch/daint/boswald/gitwork/dune-geometry
> -I/scratch/daint/boswald/gitwork/dune-grid
> -I/scratch/daint/boswald/gitwork/dune-alugrid
> -I/scratch/daint/boswald/gitwork/dune-localfunctions
> -I/scratch/daint/boswald/gitwork/dune-istl
> -I/users/boswald/extlib/boost/1.57.0/gcc/4.9.2/include
> -DHAVE_SUPERLU_DIST -DCMAKE_SYSTEM_NAME=Linux -o
> CMakeFiles/hades3ddgfd.dir/hades3ddgfd.cc.o -c
> /scratch/daint/boswald/gitwork/hades/hades/3ddgfd/hades3ddgfd.cc
> /scratch/daint/boswald/gitwork/hades/hades/3ddgfd/hades3ddgfd.cc:41:2:
> warning: #warning "warning:::HAVE_MPI is def'd !!!" [-Wcpp]
> #warning "warning:::HAVE_MPI is def'd !!!"
> ^
>
>
>
>
>
>
> On 25/03/15 17:08, Markus Blatt wrote:
>> Hi,
>>
>> On Wed, Mar 25, 2015 at 05:01:12PM +0100, Benedikt Oswald wrote:
>>> it may be a silly mistake of mine, but I keep getting errors like this,
>>> cf. below, although I include the mpi helper class and mpi collective
>>> communication etc.
>>>
>>> Would you have any idea on what is going wrong ?
>>>
>>> /scratch/daint/boswald/gitwork/hades/communicationinterface/globaluniqueindex.hh:101:58:
>>> error: 'MPI_Comm' was not declared in this scope
>>> typedef typename Dune::template CollectiveCommunication<MPI_Comm>
>>> Collective;
>>>
>> Maybe the MPI compile flags are not added for this particular
>> executable? Can you see them with "make VERBOSE=1 <target>" ?
>>
>> Markus
>>
>>
>>
>> _______________________________________________
>> Dune mailing list
>> Dune at dune-project.org
>> http://lists.dune-project.org/mailman/listinfo/dune
>
>
>
> _______________________________________________
> Dune mailing list
> Dune at dune-project.org
> http://lists.dune-project.org/mailman/listinfo/dune
--
------------------------------------------------------------------------------------------------
Dr. sc. techn. Benedikt Oswald - first engineer - LSPR AG - phone - +41 43 366 90 74
Technoparkstrasse 1, CH-8005 Zürich, benedikt.oswald at lspr.ch - labor vincit omnia improbus
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