[Dune] Problem linking with Pametis / GMP

Sahai, Amal sahai2 at illinois.edu
Mon Jul 24 17:06:44 CEST 2017


Hi Christoph

Thank your for your reply. Yes, I misspoke and this is a Cmake configure issue. I did try deleting the build directory and re-running cmake, but it does not change the outcome. Won't the following command in the FindParMETIS module :

set(PARMETIS_LIBRARY ParMETIS_LIBRARY-NOTFOUND
    CACHE FILEPATH "Full path of the ParMETIS library")

result in ParMETIS_LIBRARY-NOTFOUND always being cached (which is what I am seeing)?. In any case, I tried looking at the Error.log for the different modules and there is no additional information printed for the check_include_file call. The following excerpt is from CMakeError.log for the dune-fem-dg module:

Determining if the include file metis.h exists failed with the following output:
Change Dir: /home/amal/LIB/dune/dune-project/build/dune-fem-dg/CMakeFiles/CMakeTmp

Run Build Command:/usr/bin/make "cmTryCompileExec588475723/fast"
/usr/bin/make -f CMakeFiles/cmTryCompileExec588475723.dir/build.make CMakeFiles/cmTryCompileExec588475723.dir/build
make[1]: Entering directory `/home/amal/LIB/dune/dune-project/build/dune-fem-dg/CMakeFiles/CMakeTmp'
/usr/bin/cmake -E cmake_progress_report /home/amal/LIB/dune/dune-project/build/dune-fem-dg/CMakeFiles/CMakeTmp/CMakeFiles 1
Building C object CMakeFiles/cmTryCompileExec588475723.dir/CheckIncludeFile.c.o
/home/amal/APPS/openmpi/openmpi-2.1.1-gcc-7.1.0/bin/mpicc    -o CMakeFiles/cmTryCompileExec588475723.dir/CheckIncludeFile.c.o   -c /home/amal/\
LIB/dune/dune-project/build/dune-fem-dg/CMakeFiles/CMakeTmp/CheckIncludeFile.c
/home/amal/LIB/dune/dune-project/build/dune-fem-dg/CMakeFiles/CMakeTmp/CheckIncludeFile.c:1:10: fatal error: metis.h: No such file or director\
y
 #include <metis.h>
          ^~~~~~~~~
compilation terminated.
make[1]: *** [CMakeFiles/cmTryCompileExec588475723.dir/CheckIncludeFile.c.o] Error 1
make[1]: Leaving directory `/home/amal/LIB/dune/dune-project/build/dune-fem-dg/CMakeFiles/CMakeTmp'
make: *** [cmTryCompileExec588475723/fast] Error 2

Determing location of METIS failed:
Include directory:
Library directory:

Determining if the include file parmetis.h exists failed with the following output:
Change Dir: /home/amal/LIB/dune/dune-project/build/dune-fem-dg/CMakeFiles/CMakeTmp

Run Build Command:/usr/bin/make "cmTryCompileExec1666024213/fast"
/usr/bin/make -f CMakeFiles/cmTryCompileExec1666024213.dir/build.make CMakeFiles/cmTryCompileExec1666024213.dir/build
make[1]: Entering directory `/home/amal/LIB/dune/dune-project/build/dune-fem-dg/CMakeFiles/CMakeTmp'
/usr/bin/cmake -E cmake_progress_report /home/amal/LIB/dune/dune-project/build/dune-fem-dg/CMakeFiles/CMakeTmp/CMakeFiles 1
Building C object CMakeFiles/cmTryCompileExec1666024213.dir/CheckIncludeFile.c.o
/home/amal/APPS/openmpi/openmpi-2.1.1-gcc-7.1.0/bin/mpicc   -I/home/amal/APPS/openmpi/openmpi-2.1.1-gcc-7.1.0/include -I/home/amal/LIB/paramet\
is/parmetis-4.0.3-gcc-7.1.0-openmpi-2.1.1/include    -o CMakeFiles/cmTryCompileExec1666024213.dir/CheckIncludeFile.c.o   -c /home/amal/LIB/dun\
e/dune-project/build/dune-fem-dg/CMakeFiles/CMakeTmp/CheckIncludeFile.c
In file included from /home/amal/LIB/dune/dune-project/build/dune-fem-dg/CMakeFiles/CMakeTmp/CheckIncludeFile.c:1:0:
/home/amal/LIB/parametis/parmetis-4.0.3-gcc-7.1.0-openmpi-2.1.1/include/parmetis.h:18:10: fatal error: metis.h: No such file or directory
 #include <metis.h>
          ^~~~~~~~~
compilation terminated.
make[1]: *** [CMakeFiles/cmTryCompileExec1666024213.dir/CheckIncludeFile.c.o] Error 1
make[1]: Leaving directory `/home/amal/LIB/dune/dune-project/build/dune-fem-dg/CMakeFiles/CMakeTmp'
make: *** [cmTryCompileExec1666024213/fast] Error 2


Regards
Amal

________________________________________
From: Dune [dune-bounces at lists.dune-project.org] on behalf of Christoph GrĂ¼ninger [foss at grueninger.de]
Sent: Sunday, July 23, 2017 4:48 PM
To: dune at lists.dune-project.org
Subject: Re: [Dune] Problem linking with Pametis / GMP

Hi Amal,
your issue is no linking problem, it's a CMake (configure) issue.

Your setup looks ok and our CMake doesn't smell neither. Have you
deleted your build directory and re-run CMake? CMake is caching a lot of
checks and maybe the first run was without GMP and ParMETIS?

> Also, the CMakeError.log contains the following message:
>
> Determining if the include file parmetis.h exists failed with the following output:
> Change Dir: /home/amal/LIB/dune/dune-project/dune-grid/CMakeFiles/CMakeTmp

Is there nothing else related to the check_include_file call? Usually
there is a compiler invokation and some error output. If this is not
there, it's another pointer to caching. I'd like to see the output
error.log right afer deleting the build dir and re-running CMake.

>
> I looked at FindParMETIS.cmake and "check_include_file(parmetis.h PARMETIS_FOUND)" fails, which results in  the "if(PARMETIS_FOUND)" not being executed.

Your analysis seems to be correct. I hope it's caching!

Bye
Christoph

--
[..] Mathematicians are like theologians: we regard
existence as the prime attribute of what we study.
But unlike theologians, we need not always rely upon
faith alone.                      [Lawrence Evans]



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