[Dune] a problem with ALUGrid and Metis
Arya Fallahi
arya.fallahi at gmail.com
Mon Jul 5 18:05:25 CEST 2021
Hi Simon,
thanks a lot though for your help. the minimum required version on my clone
of alugrid was already 3.13, and I do not have any other installation that
may make a conflict. I am still trying to find out the problem but it is a
bit hopeless :-(.
Regards,
Arya
On Mon, Jul 5, 2021 at 5:02 PM Simon Praetorius <
simon.praetorius at tu-dresden.de> wrote:
> Hi Arya,
>
> actually it should be enough to set `-DMETIS_ROOT=[...]`. I just checked
> with a freshly downloaded metis 5.1, that was compiled and then I set the
> root dir to that installation of metis.
>
> In dune-alugrid I've found another glitch: it still sets the cmake version
> to 2.8. It should be set to the same as the other dune modules: 3.13 (I
> will upload a corresponding patch). In old cmake the package detection
> mechanism worked differently. For your local installation, modify the
> dune-alugrid/CMakeLists.txt file by changeing
> cmake_minimum_required(VERSION 2.8.12)
> to
> cmake_minimum_required(VERSION 3.13)
>
> Another idea what could go wrong in your case:
> - Do you have any other metis-wrapper library installed, like
> scotch-metis? This might conflict with your choice of metis library
> - You could manually disable all packages with scotch: in the cmake flags
> -DCMAKE_DISABLE_FIND_PACKAGE_PTScotch=1
>
> Unfortunately, I cannot test on a MacOS installation. Maybe this is the
> problem. You could always run your code inside a docker image for testing.
> There are some dune docker images in the container registry of dune:
>
> https://gitlab.dune-project.org/docker/ci/container_registry
>
> Best,
> Simon
> Am 05.07.21 um 15:34 schrieb Arya Fallahi:
>
> Hi again Simon,
>
> when I add the following lines to the opt file:
>
> -DMETIS_INCLUDE_DIR=/Users/afallahi/Documents/library/metis-5.1/include \
>
> -DMETIS_API_VERSION=5.1
>
> the message changes to the following:
>
> Could NOT find METIS (missing: METIS_LIBRARY) (found version "5.1")
>
> then I also tried giving the METIS_LIBRARY flag through the following line:
>
> -DMETIS_LIBRARY=/Users/afallahi/Documents/library/metis-5.1/lib
>
> that could not find metis message disappears but at the end I get the
> following error message when I want to build my module:
>
> [ 50%] Linking CXX executable leist-fedc
>
> ld: can't map file, errno=22 file
> '/Users/afallahi/Documents/library/metis-5.1/lib' for architecture x86_64
>
> collect2: error: ld returned 1 exit status
>
> make[2]: *** [src/leist-fedc] Error 1
>
> make[1]: *** [src/CMakeFiles/leist-fedc.dir/all] Error 2
>
> make: *** [all] Error 2
>
> --- Failed to build leist ---
>
>
> Does it help at all?
>
> Regards,
>
> Arya
>
>
> On Mon, Jul 5, 2021 at 3:26 PM Arya Fallahi <arya.fallahi at gmail.com>
> wrote:
>
>> Hi Simon,
>>
>> I already see the METIS Found when dune-common is configured. In the log
>> file, I see the following lines during configuring dune-common:
>>
>> -- Found METIS:
>> /Users/afallahi/Documents/library/metis-5.1/lib/libmetis.a (found version
>> "5.1")
>>
>> -- The following OPTIONAL packages have been found:
>>
>>
>> * LATEX
>>
>> * LatexMk
>>
>> * BLAS, fast linear algebra routines
>>
>> * LAPACK, fast linear algebra routines
>>
>> * QuadMath, GCC Quad-Precision Math Library, <
>> https://gcc.gnu.org/onlinedocs/libquadmath>
>>
>> * Inkscape, converts SVG images, <www.inkscape.org>
>>
>> To generate the documentation with LaTeX
>>
>> * Threads, Multi-threading library
>>
>> * PkgConfig, Unified interface for querying installed libraries
>>
>> To find Dune module dependencies
>>
>> * METIS, Serial Graph Partitioning
>>
>> * MPI, Message Passing Interface library
>>
>> Parallel programming on multiple processors
>>
>> * Python3
>>
>> Things go fine until dune-alugrid is being configured where I suddenly
>> see the following message:
>>
>> Could NOT find METIS (missing: METIS_LIBRARY METIS_INCLUDE_DIR
>> METIS_API_VERSION)
>>
>> I am using dune-common, dune-grid, dune-geometry and of course
>> dune-alugrid.
>>
>> I did a search and I have only one FindMetis.cmake which is in the
>> dune-common folder.
>>
>> Actually I was firstly using -DMETIS_DIR but later saw that in dune
>> website using -DMETIS_ROOT is advised and I changed to that and the correct
>> one is metis-5.1.
>>
>> I always run dunecontrol from scratch.
>>
>> My guess is that I should somehow give the above three variables manually
>> but I do not know how to do that.
>>
>> I just cloned the dune modules from git repository and I am running the
>> code on a mac.
>>
>> I hope it helps.
>>
>> Regards,
>>
>> Arya
>>
>> On Mon, Jul 5, 2021 at 1:52 PM Simon Praetorius <
>> simon.praetorius at tu-dresden.de> wrote:
>>
>>> ok, I think I need more information about your setup, to find the error.
>>> In your first cmake output log, it says: METIS Found (see the section "The
>>> following OPTIONAL packages have been found:...").
>>>
>>> - You should see this METIS Found output already when you configure
>>> dune-common.
>>> - If in the same cmake output it first says "Found" and then "Not
>>> found", then something is wrong.
>>> - Which dune modules are you using? The `FindMETIS.cmake` file comes
>>> from dune-common. Maybe there is another module conflicting with this?
>>> - In your first mail, you wrote something like
>>> "-DMETIS_DIR=/usr/local/Cellar/metis/5.1.0", in your last mail
>>> "-DMETIS_ROOT=/Users/afallahi/Documents/library/metis-5.1". Maybe something
>>> got mixed up?
>>> - You could try to make a clean rebuild, i.e., remove all build
>>> directories and run dunecontrol from the start:
>>>
>>> dunecontrol exec rm -rf build-cmake # to delete in ALL found dune
>>> modules the folder build-cmake (the default cmake build folder)
>>>
>>> Best, Simon
>>> Am 05.07.21 um 11:13 schrieb Arya Fallahi:
>>>
>>> Dear Simon,
>>>
>>> thank you very much for your email and answer to my question.
>>>
>>> I checked your branch and did exactly the same thing as your changes in
>>> my alugrid but it still does not work.
>>>
>>> The strange thing I see now is that during compilation, first metis is
>>> found:
>>>
>>> Found METIS: /Users/afallahi/Documents/library/metis-5.1/lib/libmetis.a
>>> (found version "5.1")
>>>
>>> but afterward I see the following message:
>>>
>>> -- Could NOT find METIS (missing: METIS_LIBRARY METIS_INCLUDE_DIR
>>> METIS_API_VERSION)
>>>
>>> I am now enabling the metis support in my opts file using
>>>
>>> -DMETIS_ROOT=/Users/afallahi/Documents/library/metis-5.1
>>>
>>> Is there anything else I should do?
>>>
>>> Again thanks a lot for your help and best regards,
>>>
>>> Arya
>>>
>>> On Sat, Jul 3, 2021 at 8:49 PM Simon Praetorius <
>>> simon.praetorius at tu-dresden.de> wrote:
>>>
>>>> Dear Arya,
>>>>
>>>> in ALUGrid, METIS is disabled additionally by a variable ALUGRID_DISABLE_METIS
>>>> that is set to true by default (I don't know why, maybe the developers can
>>>> answer) and also you have to set METIS flags on your cmake target to get it
>>>> properly enabled, by using `dune_add_mets_flags(<target>)`with `<target`
>>>> your cmake target name (e.g. an executable).
>>>>
>>>> I suggest, you try out the branch bugfix/cmake-add-metis-flags that I
>>>> have uploaded quiet recently, so solve these shortcoming with METIS in
>>>> ALUGrid.
>>>>
>>>> Best regards,
>>>> Simon
>>>>
>>>>
>>>> Am 02.07.21 um 19:16 schrieb Arya Fallahi:
>>>>
>>>> Dear Dune,
>>>>
>>>> I am having a trouble with installing ALUGrid with support metis. In my
>>>> opts file I write the following to tell ALUGrid the location of metis:
>>>>
>>>> CMAKE_FLAGS="
>>>>
>>>> -DCMAKE_CXX_COMPILER=/Users/afallahi/Documents/library/gcc-9.2/bin/g++
>>>> \
>>>>
>>>> -DCMAKE_CXX_FLAGS='-O3' \
>>>>
>>>> -DCMAKE_C_COMPILER=/Users/afallahi/Documents/library/gcc-9.2/bin/gcc
>>>> \
>>>>
>>>> -DCMAKE_C_FLAGS='-O3' \
>>>>
>>>> -DDUNE_GRID_GRIDTYPE_SELECTOR=ON \
>>>>
>>>> -DMETIS_DIR=/usr/local/Cellar/metis/5.1.0
>>>>
>>>> "
>>>>
>>>> then, during the compilation it seems metis is found:
>>>>
>>>> --- calling all for dune-alugrid ---
>>>>
>>>> --- calling vcsetup for dune-alugrid ---
>>>>
>>>> --- calling cmake for dune-alugrid ---
>>>>
>>>> ----- using default flags $CMAKE_FLAGS from
>>>> /Users/afallahi/Documents/codes/leist.opts -----
>>>>
>>>> WARNING: could not find module 'dune-uggrid',
>>>>
>>>> module is also unknown to pkg-config.
>>>>
>>>> Maybe you need to adjust PKG_CONFIG_PATH!
>>>>
>>>> 'dune-uggrid' is suggested by dune-grid
>>>>
>>>> Skipping 'dune-uggrid'!
>>>>
>>>> cmake -DCMAKE_CXX_COMPILER=/Users/afallahi/Documents/library/gcc-9.2/bin/g++
>>>> -DCMAKE_CXX_FLAGS='-O3'
>>>> -DCMAKE_C_COMPILER=/Users/afallahi/Documents/library/gcc-9.2/bin/gcc
>>>> -DCMAKE_C_FLAGS='-O3' -DDUNE_GRID_GRIDTYPE_SELECTOR=ON
>>>> -DMETIS_DIR=/usr/local/Cellar/metis/5.1.0
>>>> "-Ddune-common_DIR=/Users/afallahi/Documents/codes/dune-common/build-cmake"
>>>> "-Ddune-geometry_DIR=/Users/afallahi/Documents/codes/dune-geometry/build-cmake"
>>>> "-Ddune-grid_DIR=/Users/afallahi/Documents/codes/dune-grid/build-cmake"
>>>> -DCMAKE_CXX_COMPILER=/Users/afallahi/Documents/library/gcc-9.2/bin/g++
>>>> -DCMAKE_CXX_FLAGS='-O3'
>>>> -DCMAKE_C_COMPILER=/Users/afallahi/Documents/library/gcc-9.2/bin/gcc
>>>> -DCMAKE_C_FLAGS='-O3' -DDUNE_GRID_GRIDTYPE_SELECTOR=ON
>>>> -DMETIS_DIR=/usr/local/Cellar/metis/5.1.0
>>>> "/Users/afallahi/Documents/codes/dune-alugrid"
>>>>
>>>> -- Dependencies for dune-alugrid: dune-grid (>= 2.8)
>>>>
>>>> -- Dependencies for dune-grid: dune-geometry (>= 2.8)
>>>>
>>>> -- Suggestions for dune-grid: dune-uggrid (>=2.8)
>>>>
>>>> -- Dependencies for dune-geometry: dune-common (>= 2.8)
>>>>
>>>> -- Could NOT find dune-uggrid (missing: dune-uggrid_DIR)
>>>>
>>>> -- No full CMake package configuration support available. Falling back
>>>> to pkg-config.
>>>>
>>>> -- Checking for module 'dune-uggrid>=2.8'
>>>>
>>>> -- No package 'dune-uggrid' found
>>>>
>>>> -- Could NOT find Sphinx (missing: SPHINX_EXECUTABLE)
>>>>
>>>> -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE)
>>>>
>>>> -- Searching for macro file 'DuneCommonMacros' for module 'dune-common'.
>>>>
>>>> -- Performing tests specific to dune-common from file
>>>> /Users/afallahi/Documents/codes/dune-common/cmake/modules/DuneCommonMacros.cmake.
>>>>
>>>> -- Set Minimal Debug Level to 4
>>>>
>>>> -- Could NOT find GMP (missing: GMPXX_LIB GMPXX_INCLUDE_DIR
>>>> GMP_INCLUDE_DIR GMP_LIB)
>>>>
>>>> -- Found MPI_C:
>>>> /Users/afallahi/Documents/library/openmpi-4.0/lib/libmpi.dylib (found
>>>> suitable version "3.1", minimum required is "3.0")
>>>>
>>>> -- Found MPI: TRUE (found suitable version "3.1", minimum required is
>>>> "3.0") found components: C
>>>>
>>>> -- Could NOT find TBB (set TBB_DIR to path containing TBBConfig.cmake
>>>> or set PKG_CONFIG_PATH to include the location of the tbb.pc file)
>>>> (missing: PkgConfigTBB_LINK_LIBRARIES PkgConfigTBB_FOUND) (found version "")
>>>>
>>>> -- Could NOT find PTScotch (missing: SCOTCH_LIBRARY SCOTCHERR_LIBRARY
>>>> SCOTCH_INCLUDE_DIR)
>>>>
>>>> -- Found MPI_C:
>>>> /Users/afallahi/Documents/library/openmpi-4.0/lib/libmpi.dylib (found
>>>> version "3.1")
>>>>
>>>> -- Found MPI: TRUE (found version "3.1") found components: C
>>>>
>>>> -- Could NOT find ParMETIS (missing: PARMETIS_LIBRARY
>>>> PARMETIS_INCLUDE_DIR) (Required is at least version "4.0")
>>>>
>>>> -- Could NOT find Vc (missing: Vc_DIR)
>>>>
>>>> -- Setting
>>>> dune-common_INCLUDE_DIRS=/Users/afallahi/Documents/codes/dune-common
>>>>
>>>> -- Setting dune-common_LIBRARIES=dunecommon
>>>>
>>>> -- Searching for macro file 'DuneUggridMacros' for module 'dune-uggrid'.
>>>>
>>>> -- No module specific tests performed for module 'dune-uggrid' because
>>>> macro file 'DuneUggridMacros.cmake' not found in
>>>> /Users/afallahi/Documents/codes/dune-alugrid/cmake/modules;/Users/afallahi/Documents/codes/dune-grid/cmake/modules;/Users/afallahi/Documents/codes/dune-geometry/cmake/modules;/Users/afallahi/Documents/codes/dune-common/cmake/modules.
>>>>
>>>> -- Searching for macro file 'DuneGeometryMacros' for module
>>>> 'dune-geometry'.
>>>>
>>>> -- No module specific tests performed for module 'dune-geometry'
>>>> because macro file 'DuneGeometryMacros.cmake' not found in
>>>> /Users/afallahi/Documents/codes/dune-alugrid/cmake/modules;/Users/afallahi/Documents/codes/dune-grid/cmake/modules;/Users/afallahi/Documents/codes/dune-geometry/cmake/modules;/Users/afallahi/Documents/codes/dune-common/cmake/modules.
>>>>
>>>> -- Setting
>>>> dune-geometry_INCLUDE_DIRS=/Users/afallahi/Documents/codes/dune-geometry
>>>>
>>>> -- Setting dune-geometry_LIBRARIES=dunegeometry
>>>>
>>>> -- Searching for macro file 'DuneGridMacros' for module 'dune-grid'.
>>>>
>>>> -- Performing tests specific to dune-grid from file
>>>> /Users/afallahi/Documents/codes/dune-grid/cmake/modules/DuneGridMacros.cmake.
>>>>
>>>> -- Could NOT find ParMETIS (missing: PARMETIS_LIBRARY
>>>> PARMETIS_INCLUDE_DIR)
>>>>
>>>> -- Checking for module 'alberta-grid_1d>=3.0'
>>>>
>>>> -- No package 'alberta-grid_1d' found
>>>>
>>>> -- Checking for module 'alberta-grid_2d>=3.0'
>>>>
>>>> -- No package 'alberta-grid_2d' found
>>>>
>>>> -- Checking for module 'alberta-grid_3d>=3.0'
>>>>
>>>> -- No package 'alberta-grid_3d' found
>>>>
>>>> -- Checking for module 'alberta-grid_4d>=3.0'
>>>>
>>>> -- No package 'alberta-grid_4d' found
>>>>
>>>> -- Checking for module 'alberta-grid_5d>=3.0'
>>>>
>>>> -- No package 'alberta-grid_5d' found
>>>>
>>>> -- Checking for module 'alberta-grid_6d>=3.0'
>>>>
>>>> -- No package 'alberta-grid_6d' found
>>>>
>>>> -- Checking for module 'alberta-grid_7d>=3.0'
>>>>
>>>> -- No package 'alberta-grid_7d' found
>>>>
>>>> -- Checking for module 'alberta-grid_8d>=3.0'
>>>>
>>>> -- No package 'alberta-grid_8d' found
>>>>
>>>> -- Checking for module 'alberta-grid_9d>=3.0'
>>>>
>>>> -- No package 'alberta-grid_9d' found
>>>>
>>>> -- Could NOT find Alberta (set PKG_CONFIG_PATH to include the location
>>>> of the alberta-grid_[n]d.pc files) (missing: ALBERTA_GRID_PREFIX) (Required
>>>> is at least version "3.0")
>>>>
>>>> CMake Warning (dev) at
>>>> /Applications/CMake.app/Contents/share/cmake-3.20/Modules/FindPackageHandleStandardArgs.cmake:438
>>>> (message):
>>>>
>>>> The package name passed to `find_package_handle_standard_args`
>>>> (PkgConfig)
>>>>
>>>> does not match the name of the calling package (Psurface). This can
>>>> lead
>>>>
>>>> to problems in calling code that expects `find_package` result
>>>> variables
>>>>
>>>> (e.g., `_FOUND`) to follow a certain pattern.
>>>>
>>>> Call Stack (most recent call first):
>>>>
>>>> /Applications/CMake.app/Contents/share/cmake-3.20/Modules/FindPkgConfig.cmake:70
>>>> (find_package_handle_standard_args)
>>>>
>>>> /Users/afallahi/Documents/codes/dune-grid/cmake/modules/FindPsurface.cmake:63
>>>> (include)
>>>>
>>>> /Users/afallahi/Documents/codes/dune-grid/cmake/modules/DuneGridMacros.cmake:20
>>>> (find_package)
>>>>
>>>> /Users/afallahi/Documents/codes/dune-common/cmake/modules/DuneMacros.cmake:614
>>>> (include)
>>>>
>>>> /Users/afallahi/Documents/codes/dune-common/cmake/modules/DuneMacros.cmake:704
>>>> (dune_process_dependency_macros)
>>>>
>>>> CMakeLists.txt:48 (dune_project)
>>>>
>>>> This warning is for project developers. Use -Wno-dev to suppress it.
>>>>
>>>>
>>>> -- Checking for one of the modules 'psurface'
>>>>
>>>> -- Checking for module 'psurface'
>>>>
>>>> -- No package 'psurface' found
>>>>
>>>> -- Could NOT find Psurface (missing: PSURFACE_INCLUDE_DIR
>>>> PSURFACE_LIBRARY)
>>>>
>>>> -- Could NOT find AmiraMesh (missing: AMIRAMESH_INCLUDE_DIR
>>>> AMIRAMESH_LIBRARY)
>>>>
>>>> -- Setting
>>>> dune-grid_INCLUDE_DIRS=/Users/afallahi/Documents/codes/dune-grid
>>>>
>>>> -- Setting dune-grid_LIBRARIES=dunegrid
>>>>
>>>> -- Searching for macro file 'DuneAlugridMacros' for module
>>>> 'dune-alugrid'.
>>>>
>>>> -- Performing tests specific to dune-alugrid from file
>>>> /Users/afallahi/Documents/codes/dune-alugrid/cmake/modules/DuneAlugridMacros.cmake.
>>>>
>>>> -- Could NOT find SIONlib (missing: SIONLIB_INCLUDE_DIR SIONLIB_LIBRARY
>>>> SIONLIB_HEADER_USABLE SIONLIB_LIB_WORKS SIONLIB_LIB_SIONSER_WORKS)
>>>>
>>>> -- Could NOT find DLMalloc (missing: DLMALLOC_INCLUDE_DIR
>>>> DLMALLOC_SOURCE_INCLUDE)
>>>>
>>>> -- Could NOT find PTScotch (missing: SCOTCH_LIBRARY SCOTCHERR_LIBRARY
>>>> SCOTCH_INCLUDE_DIR)
>>>>
>>>> Found ZOLTAN_INCLUDE_DIRS-NOTFOUND
>>>>
>>>> Found ZOLTAN_LIBRARIES-NOTFOUND
>>>>
>>>> -- Not enabling torture-tests
>>>>
>>>> -- Using scripts from
>>>> /Users/afallahi/Documents/codes/dune-common/cmake/scripts for creating
>>>> doxygen stuff.
>>>>
>>>> CMake Deprecation Warning at
>>>> /Users/afallahi/Documents/codes/dune-common/cmake/modules/DuneMacros.cmake:168
>>>> (message):
>>>>
>>>> Calling target_link_libraries without the <scope> argument is
>>>> deprecated.
>>>>
>>>> Call Stack (most recent call first):
>>>>
>>>> /Users/afallahi/Documents/codes/dune-common/cmake/modules/DuneMacros.cmake:159
>>>> (target_link_libraries_helper)
>>>>
>>>> lib/CMakeLists.txt:28 (target_link_libraries)
>>>>
>>>>
>>>>
>>>> CMake Deprecation Warning at
>>>> /Users/afallahi/Documents/codes/dune-common/cmake/modules/DuneMacros.cmake:168
>>>> (message):
>>>>
>>>> Calling target_link_libraries without the <scope> argument is
>>>> deprecated.
>>>>
>>>> Call Stack (most recent call first):
>>>>
>>>> /Users/afallahi/Documents/codes/dune-common/cmake/modules/DuneMacros.cmake:159
>>>> (target_link_libraries_helper)
>>>>
>>>> lib/CMakeLists.txt:32 (target_link_libraries)
>>>>
>>>>
>>>>
>>>> CMake Deprecation Warning at
>>>> /Users/afallahi/Documents/codes/dune-common/cmake/modules/DuneMacros.cmake:168
>>>> (message):
>>>>
>>>> Calling target_link_libraries without the <scope> argument is
>>>> deprecated.
>>>>
>>>> Call Stack (most recent call first):
>>>>
>>>> /Users/afallahi/Documents/codes/dune-common/cmake/modules/DuneMacros.cmake:159
>>>> (target_link_libraries_helper)
>>>>
>>>> lib/CMakeLists.txt:44 (target_link_libraries)
>>>>
>>>>
>>>>
>>>> -- Adding custom target for config.h generation
>>>>
>>>> -- The following OPTIONAL packages have been found:
>>>>
>>>>
>>>> * LATEX
>>>>
>>>> * LatexMk
>>>>
>>>> * BLAS, fast linear algebra routines
>>>>
>>>> * LAPACK, fast linear algebra routines
>>>>
>>>> * QuadMath, GCC Quad-Precision Math Library, <
>>>> https://gcc.gnu.org/onlinedocs/libquadmath>
>>>>
>>>> * Inkscape, converts SVG images, <www.inkscape.org>
>>>>
>>>> To generate the documentation with LaTeX
>>>>
>>>> * Threads, Multi-threading library
>>>>
>>>> * Python3
>>>>
>>>> * PkgConfig, Unified interface for querying installed libraries
>>>>
>>>> To find Dune module dependencies
>>>>
>>>> * ZLIB
>>>>
>>>> * METIS, Serial Graph Partitioning
>>>>
>>>>
>>>> -- The following REQUIRED packages have been found:
>>>>
>>>>
>>>> * dune-common
>>>>
>>>> * dune-grid
>>>>
>>>> * dune-geometry
>>>>
>>>>
>>>> -- The following OPTIONAL packages have not been found:
>>>>
>>>>
>>>> * dune-uggrid
>>>>
>>>> * Sphinx, Documentation generator, <www.sphinx-doc.org>
>>>>
>>>> To generate the documentation from CMake and Python sources
>>>>
>>>> * Doxygen, Class documentation generator, <www.doxygen.org>
>>>>
>>>> To generate the class documentation from C++ sources
>>>>
>>>> * GMP, GNU multi-precision library, <https://gmplib.org>
>>>>
>>>> * TBB, Intel's Threading Building Blocks
>>>>
>>>> * Vc, C++ Vectorization library, <https://github.com/VcDevel/Vc>
>>>>
>>>> For use of SIMD instructions
>>>>
>>>> * ParMETIS, Parallel Graph Partitioning
>>>>
>>>> * Alberta (required version >= 3.0), An adaptive hierarchical finite
>>>> element toolbox and grid manager
>>>>
>>>> * Psurface, Piecewise linear bijections between triangulated surfaces
>>>>
>>>> * AmiraMesh
>>>>
>>>> * SIONlib
>>>>
>>>> * DLMalloc
>>>>
>>>> * PTScotch, Sequential and Parallel Graph Partitioning
>>>>
>>>> * ZOLTAN
>>>>
>>>>
>>>> -- Configuring done
>>>>
>>>> CMake Warning (dev) in CMakeLists.txt:
>>>>
>>>> Policy CMP0087 is not set: Install CODE|SCRIPT allow the use of
>>>> generator
>>>>
>>>> expressions. Run "cmake --help-policy CMP0087" for policy details.
>>>> Use
>>>>
>>>> the cmake_policy command to set the policy and suppress this warning.
>>>>
>>>> This warning is for project developers. Use -Wno-dev to suppress it.
>>>>
>>>>
>>>> -- Generating done
>>>>
>>>> -- Build files have been written to:
>>>> /Users/afallahi/Documents/codes/dune-alugrid/build-cmake
>>>>
>>>> --- calling make for dune-alugrid ---
>>>>
>>>> build directory: build-cmake
>>>>
>>>> cmake --build . --
>>>>
>>>> Consolidate compiler generated dependencies of target dunealugrid
>>>>
>>>> [ 4%] Building CXX object
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>>>> lib/CMakeFiles/dunealugrid.dir/__/dune/alugrid/impl/serial/ghost_elements.cc.o
>>>>
>>>> [ 56%] Building CXX object
>>>> lib/CMakeFiles/dunealugrid.dir/__/dune/alugrid/impl/duneinterface/gitter_dune_pll_impl.cc.o
>>>>
>>>> [ 60%] Building CXX object
>>>> lib/CMakeFiles/dunealugrid.dir/__/dune/alugrid/impl/parallel/mpAccess.cc.o
>>>>
>>>> [ 64%] Building CXX object
>>>> lib/CMakeFiles/dunealugrid.dir/__/dune/alugrid/impl/parallel/gitter_hexa_top_pll.cc.o
>>>>
>>>> [ 68%] Building CXX object
>>>> lib/CMakeFiles/dunealugrid.dir/__/dune/alugrid/impl/parallel/gitter_pll_impl.cc.o
>>>>
>>>> [ 68%] Building CXX object
>>>> lib/CMakeFiles/dunealugrid.dir/__/dune/alugrid/impl/parallel/gitter_pll_idn.cc.o
>>>>
>>>> [ 72%] Building CXX object
>>>> lib/CMakeFiles/dunealugrid.dir/__/dune/alugrid/impl/parallel/gitter_pll_ldb.cc.o
>>>>
>>>> [ 76%] Building CXX object
>>>> lib/CMakeFiles/dunealugrid.dir/__/dune/alugrid/impl/parallel/gitter_pll_mgb.cc.o
>>>>
>>>> [ 80%] Building CXX object
>>>> lib/CMakeFiles/dunealugrid.dir/__/dune/alugrid/impl/parallel/gitter_pll_sti.cc.o
>>>>
>>>> [ 84%] Building CXX object
>>>> lib/CMakeFiles/dunealugrid.dir/__/dune/alugrid/impl/parallel/gitter_tetra_top_pll.cc.o
>>>>
>>>> [ 88%] Building CXX object
>>>> lib/CMakeFiles/dunealugrid.dir/__/dune/alugrid/3d/faceutility.cc.o
>>>>
>>>> [ 92%] Building CXX object
>>>> lib/CMakeFiles/dunealugrid.dir/__/dune/alugrid/3d/mappings.cc.o
>>>>
>>>> [ 96%] Building CXX object
>>>> lib/CMakeFiles/dunealugrid.dir/__/dune/alugrid/3d/topology.cc.o
>>>>
>>>> [100%] Linking CXX static library libdunealugrid.a
>>>>
>>>> [100%] Built target dunealugrid
>>>>
>>>> --- dune-alugrid done ---
>>>>
>>>> but when I run my code at the point I call loadBalance(), I still get
>>>> the following error message:
>>>>
>>>> **ERROR The use of METIS_PartGraphRecursive is not supported, when the
>>>> METIS library is missing! in:
>>>> /Users/afallahi/Documents/codes/dune-alugrid/dune/alugrid/impl/parallel/alumetis.hh
>>>> line: 137
>>>>
>>>> **INFO Due to license reasons the library METIS is
>>>>
>>>> not part of the ALUGrid library distribution.
>>>>
>>>> To use this feature get a copy of the METIS library
>>>>
>>>> (see http://www-users.cs.umn.edu/~karypis/metis/metis/ )
>>>>
>>>> and re-configure the ALUGrid library with the
>>>>
>>>> --with-metis=PATH_TO_METIS option,
>>>>
>>>> or choose another Graph partitioning method.
>>>>
>>>> Exiting program, bye!
>>>>
>>>> I am stuck since several days in the problem, I will be thankful if you
>>>> give me a hint how to resolve the issue.
>>>>
>>>> Best regards
>>>>
>>>> _______________________________________________
>>>> Dune mailing listDune at lists.dune-project.orghttps://lists.dune-project.org/mailman/listinfo/dune
>>>>
>>>> --
>>>> Dr. Simon Praetorius
>>>> Technische Universität Dresden
>>>> Institute of Scientific Computing
>>>> phone: +49 351 463-34432
>>>> mail: simon.praetorius at tu-dresden.de
>>>> web: https://tu-dresden.de/mn/math/wir/das-institut/beschaeftigte/simon-praetorius
>>>>
>>>> _______________________________________________
>>>> Dune mailing list
>>>> Dune at lists.dune-project.org
>>>> https://lists.dune-project.org/mailman/listinfo/dune
>>>
>>> --
>>> Dr. Simon Praetorius
>>> Technische Universität Dresden
>>> Institute of Scientific Computing
>>> phone: +49 351 463-34432
>>> mail: simon.praetorius at tu-dresden.de
>>> web: https://tu-dresden.de/mn/math/wir/das-institut/beschaeftigte/simon-praetorius
>>>
>>> --
> Dr. Simon Praetorius
> Technische Universität Dresden
> Institute of Scientific Computing
> phone: +49 351 463-34432
> mail: simon.praetorius at tu-dresden.de
> web: https://tu-dresden.de/mn/math/wir/das-institut/beschaeftigte/simon-praetorius
>
>
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