<html><head></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">Dear Andreas,<div><br></div><div>I have compiled my code with both -g and -g3. However, I do not get anything more than before. The message I get is exactly like before. I would like to mention that the code was performing completely OK with no problem. I did not change anything on this code and only the Alugrid or Dune codes should have been changed to cause this problem.</div><div><br></div><div>Best</div><div>Arya</div><div><br><div><div>On Nov 2, 2010, at 4:00 PM, Andreas Dedner wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite">
<div text="#000000" bgcolor="#ffffff">
Hi,<br>
<br>
if you can not get a more meaningful backtrace of the problem, there is
no way I can<br>
help ypu. The problem is that your output does not tell me anything
about in which<br>
context the myvertex method in alugrid is called. Not even the dune
bindings. <br>
You will have to reconfigure all dune and alugrid using -g as compiler
flag and<br>
then rerun you code.<br>
<br>
Best<br>
Andreas<br>
<br>
On 02/11/10 14:41, arya fallahi wrote:
<blockquote cite="mid:6064DC78-4D05-4FC6-A4C9-8D5AC0C0A808@psi.ch" type="cite">Hi Andreas,
<div><br>
</div>
<div>Thank you for your consideration. The information you requested
are as the following:</div>
<div><br>
</div>
<div>
<div>pcp034701:dune-trunk fallahi$ svn info dune-common</div>
<div>Path: dune-common</div>
<div>URL: <a moz-do-not-send="true" href="https://svn.dune-project.org/svn/dune-common/trunk">https://svn.dune-project.org/svn/dune-common/trunk</a></div>
<div>Repository Root: <a moz-do-not-send="true" href="https://svn.dune-project.org/svn/dune-common">https://svn.dune-project.org/svn/dune-common</a></div>
<div>Repository UUID: 419231ca-4411-0410-aba2-fc6cf8c4f609</div>
<div>Revision: 6221</div>
<div>Node Kind: directory</div>
<div>Schedule: normal</div>
<div>Last Changed Author: christi</div>
<div>Last Changed Rev: 6221</div>
<div>Last Changed Date: 2010-10-31 23:26:39 +0100 (Sun, 31 Oct 2010)</div>
<div><br>
</div>
<div>
<div>pcp034701:dune-trunk fallahi$ svn info dune-grid</div>
<div>Path: dune-grid</div>
<div>URL: <a moz-do-not-send="true" href="https://svn.dune-project.org/svn/dune-grid/trunk">https://svn.dune-project.org/svn/dune-grid/trunk</a></div>
<div>Repository Root: <a moz-do-not-send="true" href="https://svn.dune-project.org/svn/dune-grid">https://svn.dune-project.org/svn/dune-grid</a></div>
<div>Repository UUID: f82f27de-4411-0410-b156-930a902cda50</div>
<div>Revision: 7057</div>
<div>Node Kind: directory</div>
<div>Schedule: normal</div>
<div>Last Changed Author: mnolte</div>
<div>Last Changed Rev: 7057</div>
<div>Last Changed Date: 2010-11-01 15:51:45 +0100 (Mon, 01 Nov 2010)</div>
</div>
<div><br>
</div>
<div>
<div>pcp034701:dune-trunk fallahi$ svn info dune-istl</div>
<div>Path: dune-istl</div>
<div>URL: <a moz-do-not-send="true" href="https://svn.dune-project.org/svn/dune-istl/trunk">https://svn.dune-project.org/svn/dune-istl/trunk</a></div>
<div>Repository Root: <a moz-do-not-send="true" href="https://svn.dune-project.org/svn/dune-istl">https://svn.dune-project.org/svn/dune-istl</a></div>
<div>Repository UUID: 8c7282f0-4411-0410-8e4f-cdd3e049afb8</div>
<div>Revision: 1339</div>
<div>Node Kind: directory</div>
<div>Schedule: normal</div>
<div>Last Changed Author: christi</div>
<div>Last Changed Rev: 1339</div>
<div>Last Changed Date: 2010-10-31 01:01:58 +0200 (Sun, 31 Oct 2010)</div>
</div>
<div><br>
</div>
<div>
<div>pcp034701:dune-trunk fallahi$ svn info dune-grid-howto</div>
<div>Path: dune-grid-howto</div>
<div>URL: <a moz-do-not-send="true" href="https://svn.dune-project.org/svn/dune-grid-howto/trunk">https://svn.dune-project.org/svn/dune-grid-howto/trunk</a></div>
<div>Repository Root: <a moz-do-not-send="true" href="https://svn.dune-project.org/svn/dune-grid-howto">https://svn.dune-project.org/svn/dune-grid-howto</a></div>
<div>Repository UUID: 971b7fa1-7d12-0410-b1b7-9c127676b1f7</div>
<div>Revision: 335</div>
<div>Node Kind: directory</div>
<div>Schedule: normal</div>
<div>Last Changed Author: sander</div>
<div>Last Changed Rev: 335</div>
<div>Last Changed Date: 2010-10-07 18:25:08 +0200 (Thu, 07 Oct 2010)</div>
</div>
<div><br>
</div>
<div>ALUGrid version 1.32 is being used.</div>
<div><br>
</div>
<div>The code is being run under the following system:</div>
<div><br>
</div>
<div>
<div style="margin: 0px 0px 0px 174.9px; text-indent: -174.9px; font-family: 'Lucida Grande'; font-style: normal; font-variant: normal; font-weight: normal; font-size: 11px; line-height: normal; font-size-adjust: none; font-stretch: normal; -x-system-font: none;">System
Version:<span class="Apple-tab-span" style="white-space: pre;"> </span>Mac
OS X 10.6.4 (10F569)</div>
<div style="margin: 0px 0px 0px 174.9px; text-indent: -174.9px; font-family: 'Lucida Grande'; font-style: normal; font-variant: normal; font-weight: normal; font-size: 11px; line-height: normal; font-size-adjust: none; font-stretch: normal; -x-system-font: none;">
Kernel Version:<span class="Apple-tab-span" style="white-space: pre;"> </span>Darwin
10.4.0</div>
<div style="margin: 0px 0px 0px 174.9px; text-indent: -174.9px; font-family: 'Lucida Grande'; font-style: normal; font-variant: normal; font-weight: normal; font-size: 11px; line-height: normal; font-size-adjust: none; font-stretch: normal; -x-system-font: none;">
Boot Volume:<span class="Apple-tab-span" style="white-space: pre;"> </span>Macintosh
HD</div>
<div style="margin: 0px 0px 0px 174.9px; text-indent: -174.9px; font-family: 'Lucida Grande'; font-style: normal; font-variant: normal; font-weight: normal; font-size: 11px; line-height: normal; font-size-adjust: none; font-stretch: normal; -x-system-font: none;">
Boot Mode:<span class="Apple-tab-span" style="white-space: pre;"> </span>Normal</div>
<div style="margin: 0px 0px 0px 174.9px; text-indent: -174.9px; font-family: 'Lucida Grande'; font-style: normal; font-variant: normal; font-weight: normal; font-size: 11px; line-height: normal; font-size-adjust: none; font-stretch: normal; -x-system-font: none;">
Computer Name:<span class="Apple-tab-span" style="white-space: pre;"> </span>arya
fallahi’s iMac</div>
<div style="margin: 0px 0px 0px 174.9px; text-indent: -174.9px; font-family: 'Lucida Grande'; font-style: normal; font-variant: normal; font-weight: normal; font-size: 11px; line-height: normal; font-size-adjust: none; font-stretch: normal; -x-system-font: none;">
User Name:<span class="Apple-tab-span" style="white-space: pre;"> </span>arya
fallahi (fallahi)</div>
<div style="margin: 0px 0px 0px 174.9px; text-indent: -174.9px; font-family: 'Lucida Grande'; font-style: normal; font-variant: normal; font-weight: normal; font-size: 11px; line-height: normal; font-size-adjust: none; font-stretch: normal; -x-system-font: none;">
Secure Virtual Memory:<span class="Apple-tab-span" style="white-space: pre;"> </span>Not Enabled</div>
<div style="margin: 0px 0px 0px 174.9px; text-indent: -174.9px; font-family: 'Lucida Grande'; font-style: normal; font-variant: normal; font-weight: normal; font-size: 11px; line-height: normal; font-size-adjust: none; font-stretch: normal; -x-system-font: none;">
64-bit Kernel and Extensions:<span class="Apple-tab-span" style="white-space: pre;"> </span>No</div>
<div style="margin: 0px 0px 0px 174.9px; text-indent: -174.9px; font-family: 'Lucida Grande'; font-style: normal; font-variant: normal; font-weight: normal; font-size: 11px; line-height: normal; font-size-adjust: none; font-stretch: normal; -x-system-font: none;">
Time since boot:<span class="Apple-tab-span" style="white-space: pre;">
</span>5:15</div>
</div>
<div><br>
</div>
<div>I hope the above informations are enough. The complete message I
receive is as follows:</div>
<div><br>
</div>
<div>
<div>2010-Nov-02 12:29:59.468911 ::: hades3deld.cc: 169 :::
PRODUCTION excitation data base initialized]</div>
<div><br>
</div>
<div>**WARNING (ignored) could'nt open file < alugrid.cfg > .
Using default values: </div>
<div>0 < [balance] < 1.2 partitioning method
"METIS_PartGraphKway"</div>
<div><br>
</div>
<div><br>
</div>
<div>Created parallel ALUSimplexGrid<3,3> from macro grid file
'../../../grids/standardSphereRadius1Unit.dgf'. </div>
<div><br>
</div>
<div>2010-Nov-02 12:29:59.575736 :::
../globaldatainterface/globaldatainterface.hh: 75 ::: PRODUCTION [
Get element tags from macro grid ... </div>
<div>2010-Nov-02 12:29:59.576929 :::
../globaldatainterface/globaldatainterface.hh: 134 ::: PRODUCTION
all element tags from macro grid are now available on cpu 0. ]</div>
<div>2010-Nov-02 12:29:59.576979 ::: hades3deld.cc: 211 :::
PRODUCTION global refinement = 0</div>
<div>2010-Nov-02 12:29:59.577014 ::: hades3deld.cc: 230 :::
PRODUCTION [parallel - initiate load balance</div>
<div>2010-Nov-02 12:29:59.577052 :::
../globaldatainterface/globaldatainterface.hh: 258 ::: PRODUCTION [
buffering volume tags from dgf file, better for performance</div>
<div>../globaldatainterface/globaldatainterface.hh: 285 :::
PRODUCTION DEBUG index set size = 3121</div>
<div>2010-Nov-02 12:29:59.596661 :::
../globaldatainterface/globaldatainterface.hh: 332 ::: PRODUCTION
buffered volume tags from dgf file, better for performance ]</div>
<div>2010-Nov-02 12:29:59.596921 :::
../globaldatainterface/globaldatainterface.hh: 343 ::: PRODUCTION
buffered volume tags from dgf file, better for performance ]</div>
<div>2010-Nov-02 12:29:59.596981 :::
../globaldatainterface/globaldatainterface.hh: 364 ::: PRODUCTION
buffered volume tags from dgf file, better for performance ]</div>
<div>2010-Nov-02 12:29:59.598642 :::
../globaldatainterface/globaldatainterface.hh: 399 ::: PRODUCTION
Data handling postLoadBalance begin.</div>
<div>2010-Nov-02 12:29:59.606623 :::
../globaldatainterface/globaldatainterface.hh: 462 ::: PRODUCTION
Data handling postLoadBalance begin.</div>
<div>2010-Nov-02 12:29:59.606669 ::: hades3deld.cc: 240 :::
PRODUCTION parallel - complete load balance]</div>
<div>2010-Nov-02 12:29:59.606704 ::: hades3deld.cc: 248 :::
PRODUCTION [parallel - #[remaining global refinement]=0</div>
<div>Assertion failed: (i == 0 || i == 1), function myvertex, file
/Users/fallahi/extlib/ALUGrid-1.23/include/serial/gitter_sti.h, line
2380.</div>
<div>[pcp034701:24075] *** Process received signal ***</div>
<div>[pcp034701:24075] Signal: Abort trap (6)</div>
<div>[pcp034701:24075] Signal code: (0)</div>
<div>[pcp034701:24075] [ 0] 2 libSystem.B.dylib
0x00007fff88db535a _sigtramp + 26</div>
<div>[pcp034701:24075] [ 1] 3 ???
0x00000001023b18f0 0x0 + 4332394736</div>
<div>[pcp034701:24075] [ 2] 4 libSystem.B.dylib
0x00007fff88e309b4 __pthread_markcancel + 0</div>
<div>[pcp034701:24075] [ 3] 5 hades3deld
0x000000010015c2a6
_ZN7Hades3d14MeshStatisticsIN4Dune14ALUSimplexGridILi3ELi3EEELj3EE7analyzeEv
+ 2470</div>
<div>[pcp034701:24075] [ 4] 6 hades3deld
0x00000001000091c2 main + 6082</div>
<div>[pcp034701:24075] [ 5] 7 hades3deld
0x0000000100006da8 start + 52</div>
<div>[pcp034701:24075] *** End of error message ***</div>
<div>Abort trap</div>
</div>
<div><br>
</div>
<div>Thank you again for your help,</div>
<div>Arya</div>
<div><br>
</div>
<div><br>
</div>
<div>
<div>On Nov 2, 2010, at 1:22 PM, Andreas Dedner wrote:</div>
<br class="Apple-interchange-newline">
<blockquote type="cite">
<div>Hi,<br>
<br>
as far as I am concerned, this bug report gives no information what so
ever!<br>
<br>
You seem to be in some function of your own which at some point wants to<br>
have some geometry information from alu (needs some vertex of grid at<br>
least)...<br>
There must be a lot of stuff going on between these two facts which is<br>
not available from your output<br>
and makes finding the error (as far as I can see) impossible.<br>
<br>
Please always provide as much information as possible, if you want an<br>
answer.<br>
Starting from the version of dune and alugrid you are using, which gcc<br>
under which operating system and so...<br>
Finally run everything without optimization and give a complete stack
trace.<br>
<br>
Best<br>
Andreas<br>
<br>
On 02/11/10 11:36, arya fallahi wrote:<br>
<blockquote type="cite">Dear DUNE team,<br>
</blockquote>
<blockquote type="cite"><br>
</blockquote>
<blockquote type="cite">I have got a problem with running my code.
I think it is originated from the ALUGrid usage. Would you please take
a look at the following message and let me know how I can remove the
bugg?<br>
</blockquote>
<blockquote type="cite"><br>
</blockquote>
<blockquote type="cite">Thank you in advance for your assistance<br>
</blockquote>
<blockquote type="cite">Best,<br>
</blockquote>
<blockquote type="cite">Arya<br>
</blockquote>
<blockquote type="cite"><br>
</blockquote>
<blockquote type="cite">Assertion failed: (i == 0 || i == 1),
function myvertex, file
/Users/fallahi/extlib/ALUGrid-1.23/include/serial/gitter_sti.h, line
2380.<br>
</blockquote>
<blockquote type="cite">[pcp034701:24075] *** Process received
signal ***<br>
</blockquote>
<blockquote type="cite">[pcp034701:24075] Signal: Abort trap (6)<br>
</blockquote>
<blockquote type="cite">[pcp034701:24075] Signal code: (0)<br>
</blockquote>
<blockquote type="cite">[pcp034701:24075] [ 0] 2
libSystem.B.dylib 0x00007fff88db535a _sigtramp + 26<br>
</blockquote>
<blockquote type="cite">[pcp034701:24075] [ 1] 3 ???
0x00000001023b18f0 0x0 + 4332394736<br>
</blockquote>
<blockquote type="cite">[pcp034701:24075] [ 2] 4
libSystem.B.dylib 0x00007fff88e309b4
__pthread_markcancel + 0<br>
</blockquote>
<blockquote type="cite">[pcp034701:24075] [ 3] 5 hades3deld
0x000000010015c2a6
_ZN7Hades3d14MeshStatisticsIN4Dune14ALUSimplexGridILi3ELi3EEELj3EE7analyzeEv
+ 2470<br>
</blockquote>
<blockquote type="cite">[pcp034701:24075] [ 4] 6 hades3deld
0x00000001000091c2 main + 6082<br>
</blockquote>
<blockquote type="cite">[pcp034701:24075] [ 5] 7 hades3deld
0x0000000100006da8 start + 52<br>
</blockquote>
<blockquote type="cite">[pcp034701:24075] *** End of error message
***<br>
</blockquote>
<blockquote type="cite">Abort trap<br>
</blockquote>
<blockquote type="cite"><br>
</blockquote>
<blockquote type="cite"><br>
</blockquote>
<blockquote type="cite">_______________________________________________<br>
</blockquote>
<blockquote type="cite">Dune mailing list<br>
</blockquote>
<blockquote type="cite"><a moz-do-not-send="true" href="mailto:Dune@dune-project.org">Dune@dune-project.org</a><br>
</blockquote>
<blockquote type="cite"><a moz-do-not-send="true" href="http://lists.dune-project.org/mailman/listinfo/dune">http://lists.dune-project.org/mailman/listinfo/dune</a><br>
</blockquote>
<blockquote type="cite"><br>
</blockquote>
<br>
</div>
</blockquote>
</div>
<br>
</div>
</blockquote>
<br>
</div>
</blockquote></div><br></div></body></html>