--- going to build dune-common dune-geometry dune-grid dune-istl dune-grid-howto dune-localfunctions --- No build directory provided. Defaulting to the sub directory build-cmake --- calling all for dune-common --- --- calling vcsetup for dune-common --- --- calling autogen for dune-common --- Skipping dune-autogen because of CMake --- calling configure for dune-common --- cmake -DBUILD_SHARED_LIBS:BOOL=OFF -DCMAKE_MODULE_PATH="" -DCMAKE_DISABLE_FIND_PACKAGE_MPI=TRUE --enable-experimental-grid-extensions -DCMAKE_CXX_COMPILER=/Users/oswald/extlib/gcc/4.8.1/gcc/4.8.1/bin/g++ -DCMAKE_C_COMPILER=/Users/oswald/extlib/gcc/4.8.1/gcc/4.8.1/bin/gcc -DCMAKE_PREFIX_PATH="/Users/oswald/extlib/alugrid/1.96/openmpi/1.6.5/gcc/4.8.1;/Users/oswald/extlib/metis/5.1.0/gcc/4.8.1;/Users/oswald/extlib/parmetis/4.0.3/openmpi/1.6.5/gcc/4.8.1" "/Users/oswald/gitwork/hades-github/dune-common" -- I could not find the latex2html command. -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Performing tests specific to dune-common from file /Users/oswald/gitwork/hades-github/dune-common/cmake/modules/DuneCommonMacros.cmake. -- A library with BLAS API found. -- A library with LAPACK API found. -- Could NOT find GMP (missing: GMP_INCLUDE_DIR GMP_LIB GMPXX_LIB GMP_HEADER_WORKS GMPXX_LIB_WORKS) -- Could NOT find Boost -- Dependencies for dune-common: -- Performing tests specific to dune-common from file /Users/oswald/gitwork/hades-github/dune-common/cmake/modules/DuneCommonMacros.cmake. -- A library with BLAS API found. -- A library with LAPACK API found. -- Could NOT find GMP (missing: GMP_INCLUDE_DIR GMP_LIB GMPXX_LIB GMP_HEADER_WORKS GMPXX_LIB_WORKS) -- Could NOT find Boost -- Using scripts from /Users/oswald/gitwork/hades-github/dune-common/cmake/scripts for creating doxygen stuff. -- Not adding custom target for config.h generation -- -- The following OPTIONAL packages have been found: * PkgConfig * BLAS * LAPACK * Threads -- The following OPTIONAL packages have not been found: * LATEX * UnixCommands * Doxygen * GMP * Inkscape * Boost -- Configuring done -- Generating done -- Build files have been written to: /Users/oswald/gitwork/hades-github/dune-common/build-cmake --- calling make for dune-common --- ----- using default flags $MAKE_FLAGS from /Users/oswald/gitwork/hades-github/blatt.opts ----- make -Wall [ 66%] Built target dunecommon [ 83%] Built target indexset [ 83%] Built target poosc08 [100%] Built target poosc08_test --- dune-common done --- No build directory provided. Defaulting to the sub directory build-cmake --- calling all for dune-geometry --- --- calling vcsetup for dune-geometry --- --- calling autogen for dune-geometry --- Skipping dune-autogen because of CMake --- calling configure for dune-geometry --- /Users/oswald/gitwork/hades-github/dune-geometry/lib/dunegeometryam2cmake.lib for converting options does not exist cmake -DBUILD_SHARED_LIBS:BOOL=OFF -DCMAKE_MODULE_PATH="" -DCMAKE_DISABLE_FIND_PACKAGE_MPI=TRUE "-Ddune-common_DIR=/Users/oswald/gitwork/hades-github/dune-common/build-cmake" --enable-experimental-grid-extensions -DCMAKE_CXX_COMPILER=/Users/oswald/extlib/gcc/4.8.1/gcc/4.8.1/bin/g++ -DCMAKE_C_COMPILER=/Users/oswald/extlib/gcc/4.8.1/gcc/4.8.1/bin/gcc -DCMAKE_PREFIX_PATH="/Users/oswald/extlib/alugrid/1.96/openmpi/1.6.5/gcc/4.8.1;/Users/oswald/extlib/metis/5.1.0/gcc/4.8.1;/Users/oswald/extlib/parmetis/4.0.3/openmpi/1.6.5/gcc/4.8.1" "/Users/oswald/gitwork/hades-github/dune-geometry" -- Dependencies: dune-common (versions: >= 2.3) dune-geometry_DEPENDS=dune-common (>= 2.3) -- I could not find the latex2html command. -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Performing tests specific to dune-common from file /Users/oswald/gitwork/hades-github/dune-common/cmake/modules/DuneCommonMacros.cmake. -- A library with BLAS API found. -- A library with LAPACK API found. -- Could NOT find GMP (missing: GMP_INCLUDE_DIR GMP_LIB GMPXX_LIB GMP_HEADER_WORKS GMPXX_LIB_WORKS) -- Could NOT find Boost -- Setting dune-common_INCLUDE_DIRS=/Users/oswald/gitwork/hades-github/dune-common -- Setting dune-common_LIBRARIES=dunecommon -- Dependencies for dune-common: -- Dependencies for dune-geometry: -- Performing tests specific to dune-common from file /Users/oswald/gitwork/hades-github/dune-common/cmake/modules/DuneCommonMacros.cmake. -- A library with BLAS API found. -- A library with LAPACK API found. -- Could NOT find GMP (missing: GMP_INCLUDE_DIR GMP_LIB GMPXX_LIB GMP_HEADER_WORKS GMPXX_LIB_WORKS) -- Could NOT find Boost CMake Warning (dev) at dune/geometry/quadraturerules/CMakeLists.txt:32 (message): TODO in dune-geometry/dune/geometry/quadraturerules: Distribute jacobian.mac This warning is for project developers. Use -Wno-dev to suppress it. -- Using scripts from /Users/oswald/gitwork/hades-github/dune-common/cmake/scripts for creating doxygen stuff. -- Adding custom target for config.h generation -- -- The following OPTIONAL packages have been found: * PkgConfig * BLAS * Threads * LAPACK -- The following REQUIRED packages have been found: * dune-common -- The following OPTIONAL packages have not been found: * LATEX * UnixCommands * Doxygen * GMP * Inkscape * Boost -- Configuring done You have changed variables that require your cache to be deleted. Configure will be re-run and you may have to reset some variables. The following variables have changed: CMAKE_C_COMPILER= /Users/oswald/extlib/gcc/4.8.1/gcc/4.8.1/bin/gcc -- The C compiler identification is GNU 4.8.1 -- The CXX compiler identification is GNU 4.8.1 -- Checking whether C compiler has -isysroot -- Checking whether C compiler has -isysroot - yes -- Checking whether C compiler supports OSX deployment target flag -- Checking whether C compiler supports OSX deployment target flag - yes -- Check for working C compiler: /Users/oswald/extlib/gcc/4.8.1/gcc/4.8.1/bin/gcc -- Check for working C compiler: /Users/oswald/extlib/gcc/4.8.1/gcc/4.8.1/bin/gcc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Checking whether CXX compiler has -isysroot -- Checking whether CXX compiler has -isysroot - yes -- Checking whether CXX compiler supports OSX deployment target flag -- Checking whether CXX compiler supports OSX deployment target flag - yes -- Check for working CXX compiler: /Users/oswald/extlib/gcc/4.8.1/gcc/4.8.1/bin/c++ -- Check for working CXX compiler: /Users/oswald/extlib/gcc/4.8.1/gcc/4.8.1/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Dependencies: dune-common (versions: >= 2.3) dune-geometry_DEPENDS=dune-common (>= 2.3) -- The Fortran compiler identification is GNU -- Check for working Fortran compiler: /Users/oswald/extlib/gcc/4.8.1/gcc/4.8.1/bin/gfortran -- Check for working Fortran compiler: /Users/oswald/extlib/gcc/4.8.1/gcc/4.8.1/bin/gfortran -- works -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - done -- Checking whether /Users/oswald/extlib/gcc/4.8.1/gcc/4.8.1/bin/gfortran supports Fortran 90 -- Checking whether /Users/oswald/extlib/gcc/4.8.1/gcc/4.8.1/bin/gfortran supports Fortran 90 -- yes -- Checking to see if CXX compiler accepts flag -std=c++11 -- Checking to see if CXX compiler accepts flag -std=c++11 - yes -- Performing Test HAVE_NULLPTR -- Performing Test HAVE_NULLPTR - Success -- Performing Test HAVE_ARRAY -- Performing Test HAVE_ARRAY - Success -- Looking for C++ include tuple -- Looking for C++ include tuple - found -- Looking for C++ include tr1/tuple -- Looking for C++ include tr1/tuple - found -- Looking for C++ include type_traits -- Looking for C++ include type_traits - found -- Looking for C++ include tr1/type_traits -- Looking for C++ include tr1/type_traits - found -- Looking for C++ include functional -- Looking for C++ include functional - found -- Performing Test HAVE_STD_HASH -- Performing Test HAVE_STD_HASH - Success -- Performing Test HAVE_INTEGRAL_CONSTANT -- Performing Test HAVE_INTEGRAL_CONSTANT - Success -- Performing Test HAS_ATTRIBUTE_UNUSED -- Performing Test HAS_ATTRIBUTE_UNUSED - Success -- Performing Test HAS_ATTRIBUTE_DEPRECATED -- Performing Test HAS_ATTRIBUTE_DEPRECATED - Success -- Performing Test HAS_ATTRIBUTE_DEPRECATED_MSG -- Performing Test HAS_ATTRIBUTE_DEPRECATED_MSG - Success -- Performing Test HAVE_STATIC_ASSERT -- Performing Test HAVE_STATIC_ASSERT - Success -- Performing Test HAVE_VARIADIC_TEMPLATES -- Performing Test HAVE_VARIADIC_TEMPLATES - Success -- Performing Test HAVE_VARIADIC_CONSTRUCTOR_SFINAE -- Performing Test HAVE_VARIADIC_CONSTRUCTOR_SFINAE - Success -- Performing Test HAVE_RVALUE_REFERENCES -- Performing Test HAVE_RVALUE_REFERENCES - Success -- Performing Test HAVE_STD_CONDITIONAL -- Performing Test HAVE_STD_CONDITIONAL - Success -- Performing Test HAVE_INITIALIZER_LIST -- Performing Test HAVE_INITIALIZER_LIST - Success -- Performing Test HAVE_CXA_DEMANGLE -- Performing Test HAVE_CXA_DEMANGLE - Success -- Looking for malloc.h -- Looking for malloc.h - not found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for C++ include memory -- Looking for C++ include memory - found -- Found MPI_C: /Users/oswald/extlib/openmpi/1.6.5/gcc/4.8.1/lib/libmpi.dylib;/usr/lib/libm.dylib -- Found MPI_CXX: /Users/oswald/extlib/openmpi/1.6.5/gcc/4.8.1/lib/libmpi_cxx.dylib;/Users/oswald/extlib/openmpi/1.6.5/gcc/4.8.1/lib/libmpi.dylib;/usr/lib/libm.dylib -- Found MPI_Fortran: /Users/oswald/extlib/openmpi/1.6.5/gcc/4.8.1/lib/libmpi_f90.a;/Users/oswald/extlib/openmpi/1.6.5/gcc/4.8.1/lib/libmpi_f77.dylib;/Users/oswald/extlib/openmpi/1.6.5/gcc/4.8.1/lib/libmpi.dylib;/usr/lib/libm.dylib -- Looking for include file pthread.h -- Looking for include file pthread.h - found -- Looking for pthread_create -- Looking for pthread_create - found -- Found Threads: TRUE -- Looking for MPI_Finalized -- Looking for MPI_Finalized - found -- Performing Test MPI_VERSION_SUPPORTED -- Performing Test MPI_VERSION_SUPPORTED - Success -- Detecting Fortran/C Interface -- Detecting Fortran/C Interface - Found GLOBAL and MODULE mangling -- Verifying Fortran/CXX Compiler Compatibility -- Verifying Fortran/CXX Compiler Compatibility - Success -- I could not find the latex2html command. -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Found PkgConfig: /Users/oswald/extlib/pkg-config/0.28/gcc/4.8.1/bin/pkg-config (found version "0.28") -- Performing tests specific to dune-common from file /Users/oswald/gitwork/hades-github/dune-common/cmake/modules/DuneCommonMacros.cmake. -- Performing Test SHARED_PTR_NAMESPACE_FOUND -- Performing Test SHARED_PTR_NAMESPACE_FOUND - Success -- Performing Test SHARED_PTR_HEADER_FOUND -- Performing Test SHARED_PTR_HEADER_FOUND - Success -- Looking for C++ include boost/shared_ptr.hpp -- Looking for C++ include boost/shared_ptr.hpp - not found -- Performing Test HAVE_MAKE_SHARED -- Performing Test HAVE_MAKE_SHARED - Success -- Looking for Fortran dgemm -- Looking for Fortran dgemm - found -- A library with BLAS API found. -- Looking for Fortran cheev -- Looking for Fortran cheev - found -- A library with LAPACK API found. -- Looking for C++ include gmpxx.h -- Looking for C++ include gmpxx.h - not found -- Could NOT find GMP (missing: GMP_INCLUDE_DIR GMP_LIB GMPXX_LIB GMP_HEADER_WORKS GMPXX_LIB_WORKS) -- Looking for sys/mman.h -- Looking for sys/mman.h - found -- Performing Test HAVE_MPROTECT -- Performing Test HAVE_MPROTECT - Success -- Could NOT find Boost -- Setting dune-common_INCLUDE_DIRS=/Users/oswald/gitwork/hades-github/dune-common -- Setting dune-common_LIBRARIES=dunecommon -- Dependencies for dune-common: -- Dependencies for dune-geometry: -- Performing tests specific to dune-common from file /Users/oswald/gitwork/hades-github/dune-common/cmake/modules/DuneCommonMacros.cmake. -- A library with BLAS API found. -- A library with LAPACK API found. -- Could NOT find GMP (missing: GMP_INCLUDE_DIR GMP_LIB GMPXX_LIB GMP_HEADER_WORKS GMPXX_LIB_WORKS) -- Could NOT find Boost CMake Warning (dev) at dune/geometry/quadraturerules/CMakeLists.txt:32 (message): TODO in dune-geometry/dune/geometry/quadraturerules: Distribute jacobian.mac This warning is for project developers. Use -Wno-dev to suppress it. -- Using scripts from /Users/oswald/gitwork/hades-github/dune-common/cmake/scripts for creating doxygen stuff. -- Adding custom target for config.h generation -- -- The following OPTIONAL packages have been found: * MPI * PkgConfig * BLAS * Threads * LAPACK -- The following REQUIRED packages have been found: * dune-common -- The following OPTIONAL packages have not been found: * LATEX * UnixCommands * Doxygen * GMP * Inkscape * Boost -- Configuring done -- Generating done -- Build files have been written to: /Users/oswald/gitwork/hades-github/dune-geometry/build-cmake --- calling make for dune-geometry --- ----- using default flags $MAKE_FLAGS from /Users/oswald/gitwork/hades-github/blatt.opts ----- make -Wall Scanning dependencies of target dunegeometry [ 14%] Building CXX object lib/CMakeFiles/dunegeometry.dir/__/dune/geometry/genericgeometry/referencedomain.cc.o [ 28%] Building CXX object lib/CMakeFiles/dunegeometry.dir/__/dune/geometry/genericgeometry/subtopologies.cc.o [ 42%] Building CXX object lib/CMakeFiles/dunegeometry.dir/__/dune/geometry/quadraturerules/gauss.cc.o [ 57%] Building CXX object lib/CMakeFiles/dunegeometry.dir/__/dune/geometry/quadraturerules/jacobi_1_0.cc.o [ 71%] Building CXX object lib/CMakeFiles/dunegeometry.dir/__/dune/geometry/quadraturerules/jacobi_2_0.cc.o [ 85%] Building CXX object lib/CMakeFiles/dunegeometry.dir/__/dune/geometry/quadraturerules/quadraturerules.cc.o [100%] Building CXX object lib/CMakeFiles/dunegeometry.dir/__/dune/geometry/quadraturerules/gausslobatto.cc.o Linking CXX shared library libdunegeometry.dylib [100%] Built target dunegeometry --- dune-geometry done --- No build directory provided. Defaulting to the sub directory build-cmake --- calling all for dune-grid --- --- calling vcsetup for dune-grid --- --- calling autogen for dune-grid --- Skipping dune-autogen because of CMake --- calling configure for dune-grid --- /Users/oswald/gitwork/hades-github/dune-geometry/lib/dunegeometryam2cmake.lib for converting options does not exist cmake -DBUILD_SHARED_LIBS:BOOL=OFF -DCMAKE_MODULE_PATH="" -DCMAKE_DISABLE_FIND_PACKAGE_MPI=TRUE "-Ddune-common_DIR=/Users/oswald/gitwork/hades-github/dune-common/build-cmake" "-Ddune-geometry_DIR=/Users/oswald/gitwork/hades-github/dune-geometry/build-cmake" --enable-experimental-grid-extensions -DCMAKE_CXX_COMPILER=/Users/oswald/extlib/gcc/4.8.1/gcc/4.8.1/bin/g++ -DCMAKE_C_COMPILER=/Users/oswald/extlib/gcc/4.8.1/gcc/4.8.1/bin/gcc -DCMAKE_PREFIX_PATH="/Users/oswald/extlib/alugrid/1.96/openmpi/1.6.5/gcc/4.8.1;/Users/oswald/extlib/metis/5.1.0/gcc/4.8.1;/Users/oswald/extlib/parmetis/4.0.3/openmpi/1.6.5/gcc/4.8.1" "/Users/oswald/gitwork/hades-github/dune-grid" -- Dependencies: dune-common;dune-geometry (versions: >= 2.3;>= 2.3) dune-grid_DEPENDS=dune-common (>= 2.3);dune-geometry (>= 2.3) -- Dependencies: dune-common (versions: >= 2.3) dune-geometry_DEPENDS=dune-common (>= 2.3) -- I could not find the latex2html command. -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Performing tests specific to dune-common from file /Users/oswald/gitwork/hades-github/dune-common/cmake/modules/DuneCommonMacros.cmake. -- A library with BLAS API found. -- A library with LAPACK API found. -- Could NOT find GMP (missing: GMP_INCLUDE_DIR GMP_LIB GMPXX_LIB GMP_HEADER_WORKS GMPXX_LIB_WORKS) -- Could NOT find Boost -- Setting dune-common_INCLUDE_DIRS=/Users/oswald/gitwork/hades-github/dune-common -- Setting dune-common_LIBRARIES=dunecommon -- Dependencies for dune-common: -- Setting dune-geometry_INCLUDE_DIRS=/Users/oswald/gitwork/hades-github/dune-geometry -- Setting dune-geometry_LIBRARIES=dunegeometry -- Dependencies for dune-geometry: -- Performing tests specific to dune-grid from file /Users/oswald/gitwork/hades-github/dune-grid/cmake/modules/DuneGridMacros.cmake. -- checking for module 'alugrid' -- package 'alugrid' not found -- checking for module 'alugrid' -- found alugrid, version 1.96 -- Looking for malloc in alugrid -- Looking for malloc in alugrid - found -- Looking for C++ include stlheaders.h -- Looking for C++ include stlheaders.h - found -- Found ALUGrid: /Users/oswald/extlib/alugrid/1.96/openmpi/1.6.5/gcc/4.8.1/bin/alugridversion CMake Warning at cmake/modules/UseUG.cmake:24 (find_package): By not providing "FindUG.cmake" in CMAKE_MODULE_PATH this project has asked CMake to find a package configuration file provided by "UG", but CMake did not find one. Could not find a package configuration file provided by "UG" (requested version 3.9.1) with any of the following names: UGConfig.cmake ug-config.cmake Add the installation prefix of "UG" to CMAKE_PREFIX_PATH or set "UG_DIR" to a directory containing one of the above files. If "UG" provides a separate development package or SDK, be sure it has been installed. Call Stack (most recent call first): cmake/modules/DuneGridMacros.cmake:11 (include) /Users/oswald/gitwork/hades-github/dune-common/cmake/modules/DuneMacros.cmake:494 (include) /Users/oswald/gitwork/hades-github/dune-common/cmake/modules/DuneMacros.cmake:627 (dune_process_dependency_tree) CMakeLists.txt:22 (dune_project) CMake Warning at cmake/modules/UseUG.cmake:27 (message): UG was not configured for DUNE. Did pass --enable-dune to its configure? Call Stack (most recent call first): cmake/modules/DuneGridMacros.cmake:11 (include) /Users/oswald/gitwork/hades-github/dune-common/cmake/modules/DuneMacros.cmake:494 (include) /Users/oswald/gitwork/hades-github/dune-common/cmake/modules/DuneMacros.cmake:627 (dune_process_dependency_tree) CMakeLists.txt:22 (dune_project) CMake Warning at cmake/modules/UseUG.cmake:32 (message): CMake will only find UG 3.9.1-patch10 or newer. Maybe you need to upgrade? Call Stack (most recent call first): cmake/modules/DuneGridMacros.cmake:11 (include) /Users/oswald/gitwork/hades-github/dune-common/cmake/modules/DuneMacros.cmake:494 (include) /Users/oswald/gitwork/hades-github/dune-common/cmake/modules/DuneMacros.cmake:627 (dune_process_dependency_tree) CMakeLists.txt:22 (dune_project) -- Could NOT find Grape (missing: X11_FOUND GRAPE_INCLUDE_DIR GRAPE_LIBRARY _GRAPE_LIB_FUNCTIONAL _GRAPE_HEADER_USABLE) CMake Warning (dev) at cmake/modules/FindPsurface.cmake:13 (message): TODO: Implement Amiramesh support for PSurface test Call Stack (most recent call first): cmake/modules/DuneGridMacros.cmake:14 (find_package) /Users/oswald/gitwork/hades-github/dune-common/cmake/modules/DuneMacros.cmake:494 (include) /Users/oswald/gitwork/hades-github/dune-common/cmake/modules/DuneMacros.cmake:627 (dune_process_dependency_tree) CMakeLists.txt:22 (dune_project) This warning is for project developers. Use -Wno-dev to suppress it. -- checking for one of the modules 'psurface' -- Could NOT find psurface (missing: PSURFACE_INCLUDE_DIR PSURFACE_LIBRARY) -- Could NOT find AmiraMesh (missing: AMIRAMESH_INCLUDE_DIR AMIRAMESH_LIBRARY) -- Dependencies for dune-grid: -- Performing tests specific to dune-common from file /Users/oswald/gitwork/hades-github/dune-common/cmake/modules/DuneCommonMacros.cmake. -- A library with BLAS API found. -- A library with LAPACK API found. -- Could NOT find GMP (missing: GMP_INCLUDE_DIR GMP_LIB GMPXX_LIB GMP_HEADER_WORKS GMPXX_LIB_WORKS) -- Could NOT find Boost -- Using scripts from /Users/oswald/gitwork/hades-github/dune-common/cmake/scripts for creating doxygen stuff. -- Adding custom target for config.h generation -- -- The following OPTIONAL packages have been found: * PkgConfig * ALUGrid * OpenGL * BLAS * Threads * LAPACK -- The following REQUIRED packages have been found: * dune-common * dune-geometry (required version >= 2.3.0) -- The following features have been disabled: * Experimental grid extensions , Enables additional grid features. -- The following OPTIONAL packages have not been found: * LATEX * UnixCommands * Doxygen * Alberta * UG (required version >= 3.9.1) * X11 * Grape * Psurface * AmiraMesh * GMP * Inkscape * Boost -- Configuring done You have changed variables that require your cache to be deleted. Configure will be re-run and you may have to reset some variables. The following variables have changed: CMAKE_C_COMPILER= /Users/oswald/extlib/gcc/4.8.1/gcc/4.8.1/bin/gcc -- The C compiler identification is GNU 4.8.1 -- The CXX compiler identification is GNU 4.8.1 -- Checking whether C compiler has -isysroot -- Checking whether C compiler has -isysroot - yes -- Checking whether C compiler supports OSX deployment target flag -- Checking whether C compiler supports OSX deployment target flag - yes -- Check for working C compiler: /Users/oswald/extlib/gcc/4.8.1/gcc/4.8.1/bin/gcc -- Check for working C compiler: /Users/oswald/extlib/gcc/4.8.1/gcc/4.8.1/bin/gcc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Checking whether CXX compiler has -isysroot -- Checking whether CXX compiler has -isysroot - yes -- Checking whether CXX compiler supports OSX deployment target flag -- Checking whether CXX compiler supports OSX deployment target flag - yes -- Check for working CXX compiler: /Users/oswald/extlib/gcc/4.8.1/gcc/4.8.1/bin/c++ -- Check for working CXX compiler: /Users/oswald/extlib/gcc/4.8.1/gcc/4.8.1/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Dependencies: dune-common;dune-geometry (versions: >= 2.3;>= 2.3) dune-grid_DEPENDS=dune-common (>= 2.3);dune-geometry (>= 2.3) -- Dependencies: dune-common (versions: >= 2.3) dune-geometry_DEPENDS=dune-common (>= 2.3) -- The Fortran compiler identification is GNU -- Check for working Fortran compiler: /Users/oswald/extlib/gcc/4.8.1/gcc/4.8.1/bin/gfortran -- Check for working Fortran compiler: /Users/oswald/extlib/gcc/4.8.1/gcc/4.8.1/bin/gfortran -- works -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - done -- Checking whether /Users/oswald/extlib/gcc/4.8.1/gcc/4.8.1/bin/gfortran supports Fortran 90 -- Checking whether /Users/oswald/extlib/gcc/4.8.1/gcc/4.8.1/bin/gfortran supports Fortran 90 -- yes -- Checking to see if CXX compiler accepts flag -std=c++11 -- Checking to see if CXX compiler accepts flag -std=c++11 - yes -- Performing Test HAVE_NULLPTR -- Performing Test HAVE_NULLPTR - Success -- Performing Test HAVE_ARRAY -- Performing Test HAVE_ARRAY - Success -- Looking for C++ include tuple -- Looking for C++ include tuple - found -- Looking for C++ include tr1/tuple -- Looking for C++ include tr1/tuple - found -- Looking for C++ include type_traits -- Looking for C++ include type_traits - found -- Looking for C++ include tr1/type_traits -- Looking for C++ include tr1/type_traits - found -- Looking for C++ include functional -- Looking for C++ include functional - found -- Performing Test HAVE_STD_HASH -- Performing Test HAVE_STD_HASH - Success -- Performing Test HAVE_INTEGRAL_CONSTANT -- Performing Test HAVE_INTEGRAL_CONSTANT - Success -- Performing Test HAS_ATTRIBUTE_UNUSED -- Performing Test HAS_ATTRIBUTE_UNUSED - Success -- Performing Test HAS_ATTRIBUTE_DEPRECATED -- Performing Test HAS_ATTRIBUTE_DEPRECATED - Success -- Performing Test HAS_ATTRIBUTE_DEPRECATED_MSG -- Performing Test HAS_ATTRIBUTE_DEPRECATED_MSG - Success -- Performing Test HAVE_STATIC_ASSERT -- Performing Test HAVE_STATIC_ASSERT - Success -- Performing Test HAVE_VARIADIC_TEMPLATES -- Performing Test HAVE_VARIADIC_TEMPLATES - Success -- Performing Test HAVE_VARIADIC_CONSTRUCTOR_SFINAE -- Performing Test HAVE_VARIADIC_CONSTRUCTOR_SFINAE - Success -- Performing Test HAVE_RVALUE_REFERENCES -- Performing Test HAVE_RVALUE_REFERENCES - Success -- Performing Test HAVE_STD_CONDITIONAL -- Performing Test HAVE_STD_CONDITIONAL - Success -- Performing Test HAVE_INITIALIZER_LIST -- Performing Test HAVE_INITIALIZER_LIST - Success -- Performing Test HAVE_CXA_DEMANGLE -- Performing Test HAVE_CXA_DEMANGLE - Success -- Looking for malloc.h -- Looking for malloc.h - not found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for C++ include memory -- Looking for C++ include memory - found -- Found MPI_C: /Users/oswald/extlib/openmpi/1.6.5/gcc/4.8.1/lib/libmpi.dylib;/usr/lib/libm.dylib -- Found MPI_CXX: /Users/oswald/extlib/openmpi/1.6.5/gcc/4.8.1/lib/libmpi_cxx.dylib;/Users/oswald/extlib/openmpi/1.6.5/gcc/4.8.1/lib/libmpi.dylib;/usr/lib/libm.dylib -- Found MPI_Fortran: /Users/oswald/extlib/openmpi/1.6.5/gcc/4.8.1/lib/libmpi_f90.a;/Users/oswald/extlib/openmpi/1.6.5/gcc/4.8.1/lib/libmpi_f77.dylib;/Users/oswald/extlib/openmpi/1.6.5/gcc/4.8.1/lib/libmpi.dylib;/usr/lib/libm.dylib -- Looking for include file pthread.h -- Looking for include file pthread.h - found -- Looking for pthread_create -- Looking for pthread_create - found -- Found Threads: TRUE -- Looking for MPI_Finalized -- Looking for MPI_Finalized - found -- Performing Test MPI_VERSION_SUPPORTED -- Performing Test MPI_VERSION_SUPPORTED - Success -- Detecting Fortran/C Interface -- Detecting Fortran/C Interface - Found GLOBAL and MODULE mangling -- Verifying Fortran/CXX Compiler Compatibility -- Verifying Fortran/CXX Compiler Compatibility - Success -- I could not find the latex2html command. -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Found PkgConfig: /Users/oswald/extlib/pkg-config/0.28/gcc/4.8.1/bin/pkg-config (found version "0.28") -- Performing tests specific to dune-common from file /Users/oswald/gitwork/hades-github/dune-common/cmake/modules/DuneCommonMacros.cmake. -- Performing Test SHARED_PTR_NAMESPACE_FOUND -- Performing Test SHARED_PTR_NAMESPACE_FOUND - Success -- Performing Test SHARED_PTR_HEADER_FOUND -- Performing Test SHARED_PTR_HEADER_FOUND - Success -- Looking for C++ include boost/shared_ptr.hpp -- Looking for C++ include boost/shared_ptr.hpp - not found -- Performing Test HAVE_MAKE_SHARED -- Performing Test HAVE_MAKE_SHARED - Success -- Looking for Fortran dgemm -- Looking for Fortran dgemm - found -- A library with BLAS API found. -- Looking for Fortran cheev -- Looking for Fortran cheev - found -- A library with LAPACK API found. -- Looking for C++ include gmpxx.h -- Looking for C++ include gmpxx.h - not found -- Could NOT find GMP (missing: GMP_INCLUDE_DIR GMP_LIB GMPXX_LIB GMP_HEADER_WORKS GMPXX_LIB_WORKS) -- Looking for sys/mman.h -- Looking for sys/mman.h - found -- Performing Test HAVE_MPROTECT -- Performing Test HAVE_MPROTECT - Success -- Could NOT find Boost -- Setting dune-common_INCLUDE_DIRS=/Users/oswald/gitwork/hades-github/dune-common -- Setting dune-common_LIBRARIES=dunecommon -- Dependencies for dune-common: -- Setting dune-geometry_INCLUDE_DIRS=/Users/oswald/gitwork/hades-github/dune-geometry -- Setting dune-geometry_LIBRARIES=dunegeometry -- Dependencies for dune-geometry: -- Performing tests specific to dune-grid from file /Users/oswald/gitwork/hades-github/dune-grid/cmake/modules/DuneGridMacros.cmake. -- checking for module 'alugrid' -- package 'alugrid' not found -- checking for module 'alugrid' -- package 'alugrid' not found -- Could NOT find ALUGrid (missing: ALUGRID_VERSION_CMD ALUGRID_INCLUDE_PATH ALUGRID_LIB ALUGRID_LIB_PATH ALULIB_FUNCTIONAL HAVE_ALUGRID_SERIAL_H) CMake Warning at cmake/modules/UseUG.cmake:24 (find_package): By not providing "FindUG.cmake" in CMAKE_MODULE_PATH this project has asked CMake to find a package configuration file provided by "UG", but CMake did not find one. Could not find a package configuration file provided by "UG" (requested version 3.9.1) with any of the following names: UGConfig.cmake ug-config.cmake Add the installation prefix of "UG" to CMAKE_PREFIX_PATH or set "UG_DIR" to a directory containing one of the above files. If "UG" provides a separate development package or SDK, be sure it has been installed. Call Stack (most recent call first): cmake/modules/DuneGridMacros.cmake:11 (include) /Users/oswald/gitwork/hades-github/dune-common/cmake/modules/DuneMacros.cmake:494 (include) /Users/oswald/gitwork/hades-github/dune-common/cmake/modules/DuneMacros.cmake:627 (dune_process_dependency_tree) CMakeLists.txt:22 (dune_project) CMake Warning at cmake/modules/UseUG.cmake:27 (message): UG was not configured for DUNE. Did pass --enable-dune to its configure? Call Stack (most recent call first): cmake/modules/DuneGridMacros.cmake:11 (include) /Users/oswald/gitwork/hades-github/dune-common/cmake/modules/DuneMacros.cmake:494 (include) /Users/oswald/gitwork/hades-github/dune-common/cmake/modules/DuneMacros.cmake:627 (dune_process_dependency_tree) CMakeLists.txt:22 (dune_project) CMake Warning at cmake/modules/UseUG.cmake:32 (message): CMake will only find UG 3.9.1-patch10 or newer. Maybe you need to upgrade? Call Stack (most recent call first): cmake/modules/DuneGridMacros.cmake:11 (include) /Users/oswald/gitwork/hades-github/dune-common/cmake/modules/DuneMacros.cmake:494 (include) /Users/oswald/gitwork/hades-github/dune-common/cmake/modules/DuneMacros.cmake:627 (dune_process_dependency_tree) CMakeLists.txt:22 (dune_project) -- Found OpenGL: /System/Library/Frameworks/OpenGL.framework -- Could NOT find Grape (missing: X11_FOUND GRAPE_INCLUDE_DIR GRAPE_LIBRARY _GRAPE_LIB_FUNCTIONAL _GRAPE_HEADER_USABLE) CMake Warning (dev) at cmake/modules/FindPsurface.cmake:13 (message): TODO: Implement Amiramesh support for PSurface test Call Stack (most recent call first): cmake/modules/DuneGridMacros.cmake:14 (find_package) /Users/oswald/gitwork/hades-github/dune-common/cmake/modules/DuneMacros.cmake:494 (include) /Users/oswald/gitwork/hades-github/dune-common/cmake/modules/DuneMacros.cmake:627 (dune_process_dependency_tree) CMakeLists.txt:22 (dune_project) This warning is for project developers. Use -Wno-dev to suppress it. -- Performing Test PSURFACE_MIN_VERSION_1_3 -- Performing Test PSURFACE_MIN_VERSION_1_3 - Failed -- checking for one of the modules 'psurface' -- Could NOT find psurface (missing: PSURFACE_INCLUDE_DIR PSURFACE_LIBRARY) -- Could NOT find AmiraMesh (missing: AMIRAMESH_INCLUDE_DIR AMIRAMESH_LIBRARY) -- Dependencies for dune-grid: -- Performing tests specific to dune-common from file /Users/oswald/gitwork/hades-github/dune-common/cmake/modules/DuneCommonMacros.cmake. -- A library with BLAS API found. -- A library with LAPACK API found. -- Could NOT find GMP (missing: GMP_INCLUDE_DIR GMP_LIB GMPXX_LIB GMP_HEADER_WORKS GMPXX_LIB_WORKS) -- Could NOT find Boost -- Using scripts from /Users/oswald/gitwork/hades-github/dune-common/cmake/scripts for creating doxygen stuff. -- Adding custom target for config.h generation -- -- The following OPTIONAL packages have been found: * MPI * PkgConfig * OpenGL * BLAS * Threads * LAPACK -- The following REQUIRED packages have been found: * dune-common * dune-geometry (required version >= 2.3.0) -- The following features have been disabled: * Experimental grid extensions , Enables additional grid features. -- The following OPTIONAL packages have not been found: * LATEX * UnixCommands * Doxygen * ALUGrid * Alberta * UG (required version >= 3.9.1) * X11 * Grape * Psurface * AmiraMesh * GMP * Inkscape * Boost -- Configuring done -- Generating done -- Build files have been written to: /Users/oswald/gitwork/hades-github/dune-grid/build-cmake --- calling make for dune-grid --- ----- using default flags $MAKE_FLAGS from /Users/oswald/gitwork/hades-github/blatt.opts ----- make -Wall Scanning dependencies of target dunegrid [ 14%] Building CXX object lib/CMakeFiles/dunegrid.dir/__/dune/grid/onedgrid/onedgrid.cc.o [ 14%] Building CXX object lib/CMakeFiles/dunegrid.dir/__/dune/grid/onedgrid/onedgridfactory.cc.o [ 14%] Building CXX object lib/CMakeFiles/dunegrid.dir/__/dune/grid/onedgrid/nulliteratorfactory.cc.o [ 28%] Building CXX object lib/CMakeFiles/dunegrid.dir/__/dune/grid/io/file/dgfparser/dgfparser.cc.o /Users/oswald/gitwork/hades-github/dune-grid/dune/grid/io/file/dgfparser/dgfparser.cc: In static member function ‘static std::string Dune::DuneGridFormatParser::temporaryFileName()’: /Users/oswald/gitwork/hades-github/dune-grid/dune/grid/io/file/dgfparser/dgfparser.cc:1090:30: warning: ‘char* tmpnam(char*)’ is deprecated (declared at /usr/include/stdio.h:274): This function is provided for compatibility reasons only. Due to security concerns inherent in the design of tmpnam(3), it is highly recommended that you use mkstemp(3) instead. [-Wdeprecated-declarations] return std::string( std::tmpnam( buffer ) ); ^ /Users/oswald/gitwork/hades-github/dune-grid/dune/grid/io/file/dgfparser/dgfparser.cc:1090:45: warning: ‘char* tmpnam(char*)’ is deprecated (declared at /usr/include/stdio.h:274): This function is provided for compatibility reasons only. Due to security concerns inherent in the design of tmpnam(3), it is highly recommended that you use mkstemp(3) instead. [-Wdeprecated-declarations] return std::string( std::tmpnam( buffer ) ); ^ [ 28%] Building CXX object lib/CMakeFiles/dunegrid.dir/__/dune/grid/io/file/dgfparser/dgfug.cc.o [ 42%] Building CXX object lib/CMakeFiles/dunegrid.dir/__/dune/grid/io/file/dgfparser/blocks/basic.cc.o [ 42%] Building CXX object lib/CMakeFiles/dunegrid.dir/__/dune/grid/io/file/dgfparser/blocks/boundarydom.cc.o [ 42%] Building CXX object lib/CMakeFiles/dunegrid.dir/__/dune/grid/io/file/dgfparser/blocks/boundaryseg.cc.o [ 57%] Building CXX object lib/CMakeFiles/dunegrid.dir/__/dune/grid/io/file/dgfparser/blocks/cube.cc.o [ 57%] Building CXX object lib/CMakeFiles/dunegrid.dir/__/dune/grid/io/file/dgfparser/blocks/dim.cc.o [ 71%] Building CXX object lib/CMakeFiles/dunegrid.dir/__/dune/grid/io/file/dgfparser/blocks/general.cc.o [ 71%] Building CXX object lib/CMakeFiles/dunegrid.dir/__/dune/grid/io/file/dgfparser/blocks/gridparameter.cc.o [ 71%] Building CXX object lib/CMakeFiles/dunegrid.dir/__/dune/grid/io/file/dgfparser/blocks/interval.cc.o [ 85%] Building CXX object lib/CMakeFiles/dunegrid.dir/__/dune/grid/io/file/dgfparser/blocks/periodicfacetrans.cc.o [ 85%] Building CXX object lib/CMakeFiles/dunegrid.dir/__/dune/grid/io/file/dgfparser/blocks/projection.cc.o [ 85%] Building CXX object lib/CMakeFiles/dunegrid.dir/__/dune/grid/io/file/dgfparser/blocks/simplex.cc.o [100%] Building CXX object lib/CMakeFiles/dunegrid.dir/__/dune/grid/io/file/dgfparser/blocks/simplexgeneration.cc.o [100%] Building CXX object lib/CMakeFiles/dunegrid.dir/__/dune/grid/io/file/dgfparser/blocks/vertex.cc.o Linking CXX shared library libdunegrid.dylib Undefined symbols for architecture x86_64: "toupper(int)", referenced from: Dune::dgf::makeupcase(std::basic_string, std::allocator >&) in dgfparser.cc.o Dune::dgf::makeupcase(std::basic_string, std::allocator >&) in dgfug.cc.o Dune::dgf::makeupcase(std::basic_string, std::allocator >&) in basic.cc.o Dune::dgf::makeupcase(std::basic_string, std::allocator >&) in gridparameter.cc.o ld: symbol(s) not found for architecture x86_64 collect2: error: ld returned 1 exit status make[2]: *** [lib/libdunegrid.dylib] Error 1 make[1]: *** [lib/CMakeFiles/dunegrid.dir/all] Error 2 make: *** [all] Error 2 --- Failed to build dune-grid --- Terminating dunecontrol due to previous errors!