<html><head><meta http-equiv="Content-Type" content="text/html charset=windows-1252"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;">Hello Markus, thanks,I just run a test, updating to the latest DUNE trunk.<div><br></div><div>Platform is: </div><div><br></div><div><div style="margin: 0px; font-size: 11px; font-family: Menlo; color: rgb(214, 214, 214); background-color: rgb(43, 43, 43);">dysseus:hades-pure-dune oswald$ uname -a</div><div style="margin: 0px; font-size: 11px; font-family: Menlo; color: rgb(214, 214, 214); background-color: rgb(43, 43, 43);">Darwin <a href="http://vpn-a-183-144.epfl.ch">vpn-a-183-144.epfl.ch</a> 13.1.0 Darwin Kernel Version 13.1.0: Wed Apr 2 23:52:02 PDT 2014; root:xnu-2422.92.1~2/RELEASE_X86_64 x86_64</div><div style="margin: 0px; font-size: 11px; font-family: Menlo; color: rgb(214, 214, 214); background-color: rgb(43, 43, 43);">odysseus:hades-pure-dune oswald$ mpicxx -v</div><div style="margin: 0px; font-size: 11px; font-family: Menlo; color: rgb(214, 214, 214); background-color: rgb(43, 43, 43);">Using built-in specs.</div><div style="margin: 0px; font-size: 11px; font-family: Menlo; color: rgb(214, 214, 214); background-color: rgb(43, 43, 43);">COLLECT_GCC=/Users/oswald/extlib/gcc/4.8.1/gcc/4.8.1/bin/g++</div><div style="margin: 0px; font-size: 11px; font-family: Menlo; color: rgb(214, 214, 214); background-color: rgb(43, 43, 43);">COLLECT_LTO_WRAPPER=/Users/oswald/extlib/gcc/4.8.1/gcc/4.8.1/libexec/gcc/x86_64-apple-darwin12.4.0/4.8.1/lto-wrapper</div><div style="margin: 0px; font-size: 11px; font-family: Menlo; color: rgb(214, 214, 214); background-color: rgb(43, 43, 43);">Target: x86_64-apple-darwin12.4.0</div><div style="margin: 0px; font-size: 11px; font-family: Menlo; color: rgb(214, 214, 214); background-color: rgb(43, 43, 43);">Configured with: ../gcc-4.8.1/configure --prefix=/Users/oswald/extlib/gcc/4.8.1/gcc/4.8.1 --with-gmp=/Users/oswald/extlib/gmp/5.1.2/gcc/4.8.1 --with-mpfr=/Users/oswald/extlib/mpfr/3.1.2/gcc/4.8.1 --with-mpc=/Users/oswald/extlib/mpc/1.0.1/gcc/4.8.1 --with-isl=/Users/oswald/extlib/isl/0.11.1/gcc/4.8.1 --with-cloog=/Users/oswald/extlib/cloog/0.18.0/gcc/4.8.1</div><div style="margin: 0px; font-size: 11px; font-family: Menlo; color: rgb(214, 214, 214); background-color: rgb(43, 43, 43);">Thread model: posix</div><div style="margin: 0px; font-size: 11px; font-family: Menlo; color: rgb(214, 214, 214); background-color: rgb(43, 43, 43);">gcc version 4.8.1 (GCC) </div></div><div><br></div><div><br></div><div><br></div><div>unfortunately, the error is still here:</div><div><br></div><div><div style="margin: 0px; font-size: 11px; font-family: Menlo; color: rgb(214, 214, 214); background-color: rgb(43, 43, 43);">In file included from /Users/oswald/gitwork/hades-pure-dune/dune-istl/dune/istl/matrixredistribute.hh:5:0,</div><div style="margin: 0px; font-size: 11px; font-family: Menlo; color: rgb(214, 214, 214); background-color: rgb(43, 43, 43);"> from /Users/oswald/gitwork/hades-pure-dune/dune-istl/dune/istl/paamg/transfer.hh:7,</div><div style="margin: 0px; font-size: 11px; font-family: Menlo; color: rgb(214, 214, 214); background-color: rgb(43, 43, 43);"> from /Users/oswald/gitwork/hades-pure-dune/dune-istl/dune/istl/paamg/amg.hh:10,</div><div style="margin: 0px; font-size: 11px; font-family: Menlo; color: rgb(214, 214, 214); background-color: rgb(43, 43, 43);"> from <a href="http://amgtest.cc">amgtest.cc</a>:41:</div><div style="margin: 0px; font-size: 11px; font-family: Menlo; color: rgb(214, 214, 214); background-color: rgb(43, 43, 43);">/Users/oswald/gitwork/hades-pure-dune/dune-istl/dune/istl/repartition.hh:14:19: fatal error: metis.h: No such file or directory</div><div style="margin: 0px; font-size: 11px; font-family: Menlo; color: rgb(214, 214, 214); background-color: rgb(43, 43, 43);"> #include <metis.h></div><div style="margin: 0px; font-size: 11px; font-family: Menlo; color: rgb(214, 214, 214); background-color: rgb(43, 43, 43);"> ^</div><div style="margin: 0px; font-size: 11px; font-family: Menlo; color: rgb(214, 214, 214); background-color: rgb(43, 43, 43);">compilation terminated.</div></div><div><br></div><div><br></div><div>the configure file for build with autotools is:</div><div><br></div><div><div style="margin: 0px; font-size: 11px; font-family: Monaco;">CONFIGURE_FLAGS="DUNE_LDFLAGS='-L$HOME/extlib/superludist/3.3/openmpi/1.6.5/gcc/4.8.1/lib -lsuperludist -L$HOME/extlib/parmetis/4.0.3/openmpi/1.6.5/gcc/4.8.1/lib -lparmetis -L$HOME/extlib/metis/5.1.0/gcc/4.8.1/lib -lmetis -framework vecLib '</div><div style="margin: 0px; font-size: 11px; font-family: Monaco;"> CXX='mpicxx' CC='mpicc' LD='mpicxx' F77='mpif77'</div><div style="margin: 0px; font-size: 11px; font-family: Monaco;"> CXXFLAGS='-DMPICH_IGNORE_CXX_SEEK -O2 -g0 --no-strict-aliasing '</div><div style="margin: 0px; font-size: 11px; font-family: Monaco;"> CPPFLAGS='-DMPICH_IGNORE_CXX_SEEK -O2 -g0 -DHAVE_SUPERLU_DIST -I$HOME/extlib/superludist/3.3/openmpi/1.6.5/gcc/4.8.1/SRC '</div><div style="margin: 0px; font-size: 11px; font-family: Monaco;"> CFLAGS='-DMPICH_IGNORE_CXX_SEEK -O2 -g0 -fomit-frame-pointer --no-strict-aliasing '</div><div style="margin: 0px; font-size: 11px; font-family: Monaco;"> --enable-hades3deltd</div><div style="margin: 0px; font-size: 11px; font-family: Monaco;"> --enable-hades3dfetd</div><div style="margin: 0px; font-size: 11px; font-family: Monaco;"> --enable-hades3ddges</div><div style="margin: 0px; font-size: 11px; font-family: Monaco;"> --enable-hades3ddgfd</div><div style="margin: 0px; font-size: 11px; font-family: Monaco;"> --enable-hades3dfeqs</div><div style="margin: 0px; font-size: 11px; font-family: Monaco;"> --enable-hades3dfefd</div><div style="margin: 0px; font-size: 11px; font-family: Monaco;"> --disable-documentation</div><div style="margin: 0px; font-size: 11px; font-family: Monaco;"> --enable-petsc</div><div style="margin: 0px; font-size: 11px; font-family: Monaco;"> --enable-parallel</div><div style="margin: 0px; font-size: 11px; font-family: Monaco;"> --enable-debug-output</div><div style="margin: 0px; font-size: 11px; font-family: Monaco;"> --enable-fieldvector-size-is-method</div><div style="margin: 0px; font-size: 11px; font-family: Monaco;"> --enable-experimental-grid-extensions</div><div style="margin: 0px; font-size: 11px; font-family: Monaco;"> --without-gmp</div><div style="margin: 0px; font-size: 11px; font-family: Monaco;"> --with-boost='$HOME/extlib/boost/1.55.0/gcc/4.8.1'</div><div style="margin: 0px; font-size: 11px; font-family: Monaco;"> --with-metis='$HOME/extlib/metis/5.1.0/gcc/4.8.1'</div><div style="margin: 0px; font-size: 11px; font-family: Monaco;"> --with-parmetis='$HOME/extlib/parmetis/4.0.3/openmpi/1.6.5/gcc/4.8.1'</div><div style="margin: 0px; font-size: 11px; font-family: Monaco;"> --with-alugrid='$HOME/extlib/alugrid/1.96/openmpi/1.6.5/gcc/4.8.1'</div><div style="margin: 0px; font-size: 11px; font-family: Monaco;"> --with-petsc='$HOME/extlib/petsc/3.4.2/openmpi/1.6.5/gcc/4.8.1'</div><div style="margin: 0px; font-size: 11px; font-family: Monaco;"> --prefix='$HOME/hades'</div><div style="margin: 0px; font-size: 11px; font-family: Monaco;"> "</div></div><div><br></div><div>I think that the error has to do with:</div><div><br></div><div><br></div><div><div style="margin: 0px; font-size: 11px; font-family: Menlo; color: rgb(214, 214, 214); background-color: rgb(43, 43, 43);">configure:36340: $? = 0</div><div style="margin: 0px; font-size: 11px; font-family: Menlo; color: rgb(214, 214, 214); background-color: rgb(43, 43, 43);">configure:36349: result: yes</div><div style="margin: 0px; font-size: 11px; font-family: Menlo; color: rgb(214, 214, 214); background-color: rgb(43, 43, 43);">configure:36628: PARMETIS: checking for /Users/oswald/extlib/par<span style="color: #2b2b2b; background-color: #d6d6d6">metis</span>/4.0.3/openmpi/1.6.5/gcc/4.8.1/include </div><div style="margin: 0px; font-size: 11px; font-family: Menlo; color: rgb(214, 214, 214); background-color: rgb(43, 43, 43);">configure:36657: checking for METIS library</div><div style="margin: 0px; font-size: 11px; font-family: Menlo; color: rgb(214, 214, 214); background-color: rgb(43, 43, 43);">configure:36673: result: yes</div><div style="margin: 0px; font-size: 11px; font-family: Menlo; color: rgb(214, 214, 214); background-color: rgb(43, 43, 43);">configure:36744: checking for METIS_PartGraphKway in -l<span style="color: #2b2b2b; background-color: #d6d6d6">metis</span></div><div style="margin: 0px; font-size: 11px; font-family: Menlo; color: rgb(214, 214, 214); background-color: rgb(43, 43, 43);">configure:36785: mpicc -o conftest -I/Users/oswald/extlib/<span style="color: #2b2b2b; background-color: #d6d6d6">metis</span>/5.1.0/gcc/4.8.1//include -DMPICH_IGNORE_CXX_SEEK -O2 -g0 -DHAVE_SUPERLU_DIST -I/Users/oswald/extlib/superludist/3.3/openmpi/1.6.5/gcc/4.8.1/SRC -L/Users/oswald/extlib/<span style="color: #2b2b2b; background-color: #d6d6d6">metis</span>/5.1.0/gcc/4.8.1//lib conftest.c -l<span style="color: #2b2b2b; background-color: #d6d6d6">metis</span> -lm -lm >&5</div><div style="margin: 0px; font-size: 11px; font-family: Menlo; color: rgb(214, 214, 214); background-color: rgb(43, 43, 43);">configure:36785: $? = 0</div><div style="margin: 0px; font-size: 11px; font-family: Menlo; color: rgb(214, 214, 214); background-color: rgb(43, 43, 43);">configure:36794: result: yes</div><div style="margin: 0px; font-size: 11px; font-family: Menlo; color: rgb(214, 214, 214); background-color: rgb(43, 43, 43);">configure:36804: checking for <span style="color: #2b2b2b; background-color: #d6d6d6">metis</span>.h</div><div style="margin: 0px; font-size: 11px; font-family: Menlo; color: rgb(214, 214, 214); background-color: rgb(43, 43, 43);">configure:36804: mpicc -c -I/Users/oswald/extlib/<span style="color: #2b2b2b; background-color: #d6d6d6">metis</span>/5.1.0/gcc/4.8.1//include -DMPICH_IGNORE_CXX_SEEK -O2 -g0 -DHAVE_SUPERLU_DIST -I/Users/oswald/extlib/superludist/3.3/openmpi/1.6.5/gcc/4.8.1/SRC conftest.c >&5</div><div style="margin: 0px; font-size: 11px; font-family: Menlo; color: rgb(214, 214, 214); background-color: rgb(43, 43, 43);">configure:36804: $? = 0</div><div style="margin: 0px; font-size: 11px; font-family: Menlo; color: rgb(214, 214, 214); background-color: rgb(43, 43, 43);">configure:36804: result: yes</div><div style="margin: 0px; font-size: 11px; font-family: Menlo; color: rgb(214, 214, 214); background-color: rgb(43, 43, 43);">configure:36825: checking METIS in /Users/oswald/extlib/<span style="color: #2b2b2b; background-color: #d6d6d6">metis</span>/5.1.0/gcc/4.8.1</div><div style="margin: 0px; font-size: 11px; font-family: Menlo; color: rgb(214, 214, 214); background-color: rgb(43, 43, 43);">configure:36834: result: ok</div><div style="margin: 0px; font-size: 11px; font-family: Menlo; color: rgb(214, 214, 214); background-color: rgb(43, 43, 43);">configure:36904: checking par<span style="color: #2b2b2b; background-color: #d6d6d6">metis</span>.h usability</div><div style="margin: 0px; font-size: 11px; font-family: Menlo; color: rgb(214, 214, 214); background-color: rgb(43, 43, 43);">configure:36904: mpicc -c -DMPICH_IGNORE_CXX_SEEK -O2 -g0 -fomit-frame-pointer --no-strict-aliasing -DMPICH_IGNORE_CXX_SEEK -O2 -g0 -DHAVE_SUPERLU_DIST -I/Users/oswald/extlib/superludist/3.3/openmpi/1.6.5/gcc/4.8.1/SRC -I/Users/oswald/extlib/par<span style="color: #2b2b2b; background-color: #d6d6d6">metis</span>/4.0.3/openmpi/1.6.5/gcc/4.8.1/include -I/Users/oswald/extlib/<span style="color: #2b2b2b; background-color: #d6d6d6">metis</span>/5.1.0/gcc/4.8.1/include -I/Users/oswald/extlib/openmpi/1.6.5/gcc/4.8.1/include -DMPIPP_H -DENABLE_MPI=1 conftest.c >&5</div><div style="margin: 0px; font-size: 11px; font-family: Menlo; color: rgb(214, 214, 214); background-color: rgb(43, 43, 43);">configure:36904: $? = 0</div><div style="margin: 0px; font-size: 11px; font-family: Menlo; color: rgb(214, 214, 214); background-color: rgb(43, 43, 43);">configure:36904: result: yes</div><div style="margin: 0px; font-size: 11px; font-family: Menlo; color: rgb(214, 214, 214); background-color: rgb(43, 43, 43);">configure:36904: checking par<span style="color: #2b2b2b; background-color: #d6d6d6">metis</span>.h presence</div><div style="margin: 0px; font-size: 11px; font-family: Menlo; color: rgb(214, 214, 214); background-color: rgb(43, 43, 43);">configure:36904: mpicc -E -DMPICH_IGNORE_CXX_SEEK -O2 -g0 -DHAVE_SUPERLU_DIST -I/Users/oswald/extlib/superludist/3.3/openmpi/1.6.5/gcc/4.8.1/SRC -I/Users/oswald/extlib/par<span style="color: #2b2b2b; background-color: #d6d6d6">metis</span>/4.0.3/openmpi/1.6.5/gcc/4.8.1/include -I/Users/oswald/extlib/<span style="color: #2b2b2b; background-color: #d6d6d6">metis</span>/5.1.0/gcc/4.8.1/include -I/Users/oswald/extlib/openmpi/1.6.5/gcc/4.8.1/include -DMPIPP_H -DENABLE_MPI=1 conftest.c</div><div style="margin: 0px; font-size: 11px; font-family: Menlo; color: rgb(214, 214, 214); background-color: rgb(43, 43, 43);">configure:36904: $? = 0</div><div style="margin: 0px; font-size: 11px; font-family: Menlo; color: rgb(214, 214, 214); background-color: rgb(43, 43, 43);">configure:36904: result: yes</div><div style="margin: 0px; font-size: 11px; font-family: Menlo; color: rgb(214, 214, 214); background-color: rgb(43, 43, 43);">configure:36904: checking for par<span style="color: #2b2b2b; background-color: #d6d6d6">metis</span>.h</div><div style="margin: 0px; font-size: 11px; font-family: Menlo; color: rgb(214, 214, 214); background-color: rgb(43, 43, 43);">configure:36904: result: yes</div><div style="margin: 0px; font-size: 11px; font-family: Menlo; color: rgb(214, 214, 214); background-color: rgb(43, 43, 43);">configure:36929: checking for <span style="color: #2b2b2b; background-color: #d6d6d6">metis</span>_partgraphkway in -L/Users/oswald/extlib/par<span style="color: #2b2b2b; background-color: #d6d6d6">metis</span>/4.0.3/openmpi/1.6.5/gcc/4.8.1/lib -l<span style="color: #2b2b2b; background-color: #d6d6d6">metis</span></div><div style="margin: 0px; font-size: 11px; font-family: Menlo; color: rgb(214, 214, 214); background-color: rgb(43, 43, 43);">configure:36970: mpicc -o conftest -DMPICH_IGNORE_CXX_SEEK -O2 -g0 -fomit-frame-pointer --no-strict-aliasing -DMPICH_IGNORE_CXX_SEEK -O2 -g0 -DHAVE_SUPERLU_DIST -I/Users/oswald/extlib/superludist/3.3/openmpi/1.6.5/gcc/4.8.1/SRC -I/Users/oswald/extlib/par<span style="color: #2b2b2b; background-color: #d6d6d6">metis</span>/4.0.3/openmpi/1.6.5/gcc/4.8.1/include -I/Users/oswald/extlib/<span style="color: #2b2b2b; background-color: #d6d6d6">metis</span>/5.1.0/gcc/4.8.1/include -I/Users/oswald/extlib/openmpi/1.6.5/gcc/4.8.1/include -DMPIPP_H -DENABLE_MPI=1 conftest.c -L/Users/oswald/extlib/par<span style="color: #2b2b2b; background-color: #d6d6d6">metis</span>/4.0.3/openmpi/1.6.5/gcc/4.8.1/lib -l<span style="color: #2b2b2b; background-color: #d6d6d6">metis</span> -L/Users/oswald/extlib/openmpi/1.6.5/gcc/4.8.1/lib -lmpi -lm -lm -lm >&5</div><div style="margin: 0px; font-size: 11px; font-family: Menlo; color: rgb(214, 214, 214); background-color: rgb(43, 43, 43);">ld: library not found for -l<span style="color: #2b2b2b; background-color: #d6d6d6">metis</span></div><div style="margin: 0px; font-size: 11px; font-family: Menlo; color: rgb(214, 214, 214); background-color: rgb(43, 43, 43);">collect2: error: ld returned 1 exit status</div></div><div><br></div><div><br></div><div><br></div><div><br></div><div>Greetings, Benedikt</div><div><br></div><div><div apple-content-edited="true"><br>
</div>
<br><div><div>On 28 Apr 2014, at 11:43, Markus Blatt <<a href="mailto:markus@dr-blatt.de">markus@dr-blatt.de</a>> wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite">Hi,<br><br>I tried to fix this hickup. Please try the lastet master of dune-istl.<br><br>Markus<br><br>On Sun, Apr 27, 2014 at 12:31:19AM +0200, Benedikt Oswald wrote:<br><blockquote type="cite">Dear Dune,<br><br>I just stumbled over the problem that, all of a sudden, including metis and parmetis creates the problem that metis.h is<br>not found anymore:<br><br>although using totally valid directives as:<br><br> --with-metis='$HOME/extlib/metis/5.1.0/gcc/4.8.2'<br> --with-parmetis='$HOME/extlib/parmetis/4.0.3/openmpi/1.8/gcc/4.8.2’<br><br>eventually, the build process says:<br><br>/Users/oswald/gitwork/hades-pure-dune/dune-istl/dune/istl/repartition.hh:14:19: fatal error: metis.h: No such file or directory<br><br><br>interestingly,<br><br>1) this was not a problem a few days ago, I have used this literally for years<br><br>2) using --with-parmetis='$HOME/extlib/parmetis/4.0.3/openmpi/1.8/gcc/4.8.2’ runs through<br><br><br>platform is:<br><br>vpn-b-195-224:hades-pure-dune oswald$ uname -a<br>Darwin <a href="http://vpn-b-195-224.epfl.ch">vpn-b-195-224.epfl.ch</a> 13.1.0 Darwin Kernel Version 13.1.0: Thu Jan 16 19:40:37 PST 2014; root:xnu-2422.90.20~2/RELEASE_X86_64 x86_64<br><br>gcc 4.8.2<br><br>openmpi 1.8<br><br>very latest dune trunk from tonight<br><br><br>were there changes to including metis / parmetis ?<br>Or, did I include them in a wrong way ?<br><br>Greetings, Benedikt<br><br></blockquote><br><br><br><blockquote type="cite">_______________________________________________<br>Dune mailing list<br><a href="mailto:Dune@dune-project.org">Dune@dune-project.org</a><br>http://lists.dune-project.org/mailman/listinfo/dune<br></blockquote><br><br>-- <br>Do you need more support with DUNE or HPC in general? <br><br>Dr. Markus Blatt - HPC-Simulation-Software & Services <a href="http://www.dr-blatt.de">http://www.dr-blatt.de</a><br>Hans-Bunte-Str. 8-10, 69123 Heidelberg, Germany<br>Tel.: +49 (0) 160 97590858<br></blockquote></div><br></div></body></html>