[Dune] [Fwd: Re: ALUGrid-1.13 on Mac OS X, problems configuring]

Fri Feb 6 14:41:27 CET 2009

Hi there,

I am having exactly the same problem (also on Mac OS X 10.5.6) and for
me removing the include was no solution, the error stays the same.

Greetings,
Sven Kaulmann
Universitaet Muenster

Am 06.02.2009 um 12:36 schrieb Rene Milk:

>
>
> could you try, if the code compiles if you remove the
>
> #include <malloc.h>
>
> from the file alu2d/handle.h ?
>
> If g++ it seems to be ok.
>
> Regards
>
> Robert
> -- =
>
>
>   Robert Kl=F6fkorn           <robertk at mathematik.uni-freiburg.de>
>
>   Mathematisches Institut              Tel: +49 (0) 761 203 5631
>   Abt. f=FCr Angewandte Mathematik       Fax: +49 (0) 761 203 5632
>   Universit=E4t Freiburg
>   Hermann-Herder-Str. 10
>   79104 Freiburg
>
>   http://www.mathematik.uni-freiburg.de/IAM/homepages/robertk
>
> _______________________________________________
> Dune mailing list
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>
>
>
>
>
> although it might be slightly off-topic, I nevertheless would like
> to ask for advice with compiling ALUGrid-1.13 on Mac OS X, 10.5.6:
>
> I have successfully managed to configure ALUGrid on mac os x,
> with one problem:
>
> The configure only succeeded if the additional directory
> /usr/include/malloc was given in the CPPFLAGS, without
> this option it would not succeed. It seems that this is standard
> on Mac, but the configure would not find it ?
>
> The second, more severe problem is:
>
>
> seraphor-129129145087:ALUGrid-1.13 benediktoswald$ make
> make  all-recursive
> Making all in src
> Making all in serial
> make[3]: Nothing to be done for `all'.
> Making all in parallel
> make[3]: Nothing to be done for `all'.
> Making all in duneinterface
> make[3]: Nothing to be done for `all'.
> Making all in alu2d
> make[3]: Nothing to be done for `all'.
> /bin/sh ../libtool --tag=CXX   --mode=compile gcc-4.2 - 
> DHAVE_CONFIG_H -I. -I..  -I/usr/include/malloc   -I/Users/ 
> benediktoswald/extlib/metis-4.0/Lib -I./serial -I./parallel -I./ 
> duneinterface -I./alu2d  -I/usr/include/malloc   -g -O2 -MT  
> alugrid_serial.lo -MD -MP -MF .deps/alugrid_serial.Tpo -c -o  
> alugrid_serial.lo alugrid_serial.cc
> gcc-4.2 -DHAVE_CONFIG_H -I. -I.. -I/usr/include/malloc -I/Users/ 
> benediktoswald/extlib/metis-4.0/Lib -I./serial -I./parallel -I./ 
> duneinterface -I./alu2d -I/usr/include/malloc -g -O2 -MT  
> alugrid_serial.lo -MD -MP -MF .deps/alugrid_serial.Tpo -c  
> alugrid_serial.cc -o alugrid_serial.o
> alugrid_serial.cc:33:2: warning: #warning -- Compiling ALUGrid code  
> in debug mode!!! Use -DNDEBUG to get more optimized code!!!
> mv -f .deps/alugrid_serial.Tpo .deps/alugrid_serial.Plo
> /bin/sh ../libtool --tag=CXX   --mode=compile gcc-4.2 - 
> DHAVE_CONFIG_H -I. -I..  -I/usr/include/malloc   -I/Users/ 
> benediktoswald/extlib/metis-4.0/Lib -I./serial -I./parallel -I./ 
> duneinterface -I./alu2d  -I/usr/include/malloc   -g -O2 -MT  
> alugrid_parallel.lo -MD -MP -MF .deps/alugrid_parallel.Tpo -c -o  
> alugrid_parallel.lo alugrid_parallel.cc
> gcc-4.2 -DHAVE_CONFIG_H -I. -I.. -I/usr/include/malloc -I/Users/ 
> benediktoswald/extlib/metis-4.0/Lib -I./serial -I./parallel -I./ 
> duneinterface -I./alu2d -I/usr/include/malloc -g -O2 -MT  
> alugrid_parallel.lo -MD -MP -MF .deps/alugrid_parallel.Tpo -c  
> alugrid_parallel.cc -o alugrid_parallel.o
> alugrid_parallel.cc:33:2: warning: #warning -- Compiling ALUGrid  
> code in debug mode!!! Use -DNDEBUG to get more optimized code!!!
> In file included from alugrid_parallel.cc:84:
> parallel/party_lib.c:31:2: warning: #warning -- Compiling parallel  
> version without PARTY_LIB !!!
> mv -f .deps/alugrid_parallel.Tpo .deps/alugrid_parallel.Plo
> /bin/sh ../libtool --tag=CXX   --mode=compile gcc-4.2 - 
> DHAVE_CONFIG_H -I. -I..  -I/usr/include/malloc   -I/Users/ 
> benediktoswald/extlib/metis-4.0/Lib -I./serial -I./parallel -I./ 
> duneinterface -I./alu2d  -I/usr/include/malloc   -g -O2 -MT  
> alugrid_2d.lo -MD -MP -MF .deps/alugrid_2d.Tpo -c -o alugrid_2d.lo  
> alugrid_2d.cc
> gcc-4.2 -DHAVE_CONFIG_H -I. -I.. -I/usr/include/malloc -I/Users/ 
> benediktoswald/extlib/metis-4.0/Lib -I./serial -I./parallel -I./ 
> duneinterface -I./alu2d -I/usr/include/malloc -g -O2 -MT  
> alugrid_2d.lo -MD -MP -MF .deps/alugrid_2d.Tpo -c alugrid_2d.cc -o  
> alugrid_2d.o
> alugrid_2d.cc:33:2: warning: #warning -- Compiling ALUGrid code in  
> debug mode!!! Use -DNDEBUG to get more optimized code!!!
> In file included from alugrid_2d.cc:39:
> alu2d/handle.cc: In function 'void  
> ALUGridSpace::get_memory(ALUGridSpace::mallinfo&)':
> alu2d/handle.cc:294: error: invalid use of incomplete type 'struct  
> ALUGridSpace::mallinfo'
> alu2d/handle.h:1044: error: forward declaration of 'struct  
> ALUGridSpace::mallinfo'
> alu2d/handle.cc: In function 'void  
> ALUGridSpace::get_memory_diff(ALUGridSpace::mallinfo&)':
> alu2d/handle.cc:298: error: variable 'ALUGridSpace::mallinfo  
> meminfo' has initializer but incomplete type
> alu2d/handle.cc:298: error: invalid use of incomplete type 'struct  
> ALUGridSpace::mallinfo'
> alu2d/handle.h:1044: error: forward declaration of 'struct  
> ALUGridSpace::mallinfo'
> alu2d/handle.cc:299: error: invalid use of incomplete type 'struct  
> ALUGridSpace::mallinfo'
> alu2d/handle.h:1044: error: forward declaration of 'struct  
> ALUGridSpace::mallinfo'
> alu2d/handle.cc:300: error: invalid use of incomplete type 'struct  
> ALUGridSpace::mallinfo'
> alu2d/handle.h:1044: error: forward declaration of 'struct  
> ALUGridSpace::mallinfo'
> alu2d/handle.cc:301: error: invalid use of incomplete type 'struct  
> ALUGridSpace::mallinfo'
> alu2d/handle.h:1044: error: forward declaration of 'struct  
> ALUGridSpace::mallinfo'
> alu2d/handle.cc:302: error: invalid use of incomplete type 'struct  
> ALUGridSpace::mallinfo'
> alu2d/handle.h:1044: error: forward declaration of 'struct  
> ALUGridSpace::mallinfo'
> alu2d/handle.cc:303: error: invalid use of incomplete type 'struct  
> ALUGridSpace::mallinfo'
> alu2d/handle.h:1044: error: forward declaration of 'struct  
> ALUGridSpace::mallinfo'
> alu2d/handle.cc:304: error: invalid use of incomplete type 'struct  
> ALUGridSpace::mallinfo'
> alu2d/handle.h:1044: error: forward declaration of 'struct  
> ALUGridSpace::mallinfo'
> alu2d/handle.cc:305: error: invalid use of incomplete type 'struct  
> ALUGridSpace::mallinfo'
> alu2d/handle.h:1044: error: forward declaration of 'struct  
> ALUGridSpace::mallinfo'
> alu2d/handle.cc:306: error: invalid use of incomplete type 'struct  
> ALUGridSpace::mallinfo'
> alu2d/handle.h:1044: error: forward declaration of 'struct  
> ALUGridSpace::mallinfo'
> alu2d/handle.cc:307: error: invalid use of incomplete type 'struct  
> ALUGridSpace::mallinfo'
> alu2d/handle.h:1044: error: forward declaration of 'struct  
> ALUGridSpace::mallinfo'
> alu2d/handle.cc:308: error: invalid use of incomplete type 'struct  
> ALUGridSpace::mallinfo'
> alu2d/handle.h:1044: error: forward declaration of 'struct  
> ALUGridSpace::mallinfo'
> alu2d/handle.cc: In function 'void  
> ALUGridSpace::write_memory(std::ostream&, char*)':
> alu2d/handle.cc:312: error: variable 'ALUGridSpace::mallinfo  
> meminfo' has initializer but incomplete type
> alu2d/handle.cc:312: error: invalid use of incomplete type 'struct  
> ALUGridSpace::mallinfo'
> alu2d/handle.h:1044: error: forward declaration of 'struct  
> ALUGridSpace::mallinfo'
> alu2d/handle.cc: In function 'void  
> ALUGridSpace::write_memory(std::ostream&, char*,  
> ALUGridSpace::mallinfo&)':
> alu2d/handle.cc:323: error: invalid use of incomplete type 'struct  
> ALUGridSpace::mallinfo'
> alu2d/handle.h:1044: error: forward declaration of 'struct  
> ALUGridSpace::mallinfo'
> alu2d/handle.cc:326: error: invalid use of incomplete type 'struct  
> ALUGridSpace::mallinfo'
> alu2d/handle.h:1044: error: forward declaration of 'struct  
> ALUGridSpace::mallinfo'
> alu2d/handle.cc:327: error: invalid use of incomplete type 'struct  
> ALUGridSpace::mallinfo'
> alu2d/handle.h:1044: error: forward declaration of 'struct  
> ALUGridSpace::mallinfo'
> alu2d/handle.cc:328: error: invalid use of incomplete type 'struct  
> ALUGridSpace::mallinfo'
> alu2d/handle.h:1044: error: forward declaration of 'struct  
> ALUGridSpace::mallinfo'
> alu2d/handle.cc:329: error: invalid use of incomplete type 'struct  
> ALUGridSpace::mallinfo'
> alu2d/handle.h:1044: error: forward declaration of 'struct  
> ALUGridSpace::mallinfo'
> alu2d/handle.cc: In function 'void  
> ALUGridSpace::write_memory_diff(std::ostream&, char*,  
> ALUGridSpace::mallinfo&)':
> alu2d/handle.cc:334: error: variable 'ALUGridSpace::mallinfo  
> meminfo' has initializer but incomplete type
> alu2d/handle.cc:334: error: invalid use of incomplete type 'struct  
> ALUGridSpace::mallinfo'
> alu2d/handle.h:1044: error: forward declaration of 'struct  
> ALUGridSpace::mallinfo'
> alu2d/handle.cc:335: error: invalid use of incomplete type 'struct  
> ALUGridSpace::mallinfo'
> alu2d/handle.h:1044: error: forward declaration of 'struct  
> ALUGridSpace::mallinfo'
> alu2d/handle.cc:336: error: invalid use of incomplete type 'struct  
> ALUGridSpace::mallinfo'
> alu2d/handle.h:1044: error: forward declaration of 'struct  
> ALUGridSpace::mallinfo'
> alu2d/handle.cc:337: error: invalid use of incomplete type 'struct  
> ALUGridSpace::mallinfo'
> alu2d/handle.h:1044: error: forward declaration of 'struct  
> ALUGridSpace::mallinfo'
> alu2d/handle.cc:338: error: invalid use of incomplete type 'struct  
> ALUGridSpace::mallinfo'
> alu2d/handle.h:1044: error: forward declaration of 'struct  
> ALUGridSpace::mallinfo'
> alu2d/handle.cc:339: error: invalid use of incomplete type 'struct  
> ALUGridSpace::mallinfo'
> alu2d/handle.h:1044: error: forward declaration of 'struct  
> ALUGridSpace::mallinfo'
> alu2d/handle.cc:340: error: invalid use of incomplete type 'struct  
> ALUGridSpace::mallinfo'
> alu2d/handle.h:1044: error: forward declaration of 'struct  
> ALUGridSpace::mallinfo'
> alu2d/handle.cc:341: error: invalid use of incomplete type 'struct  
> ALUGridSpace::mallinfo'
> alu2d/handle.h:1044: error: forward declaration of 'struct  
> ALUGridSpace::mallinfo'
> alu2d/handle.cc:342: error: invalid use of incomplete type 'struct  
> ALUGridSpace::mallinfo'
> alu2d/handle.h:1044: error: forward declaration of 'struct  
> ALUGridSpace::mallinfo'
> alu2d/handle.cc:343: error: invalid use of incomplete type 'struct  
> ALUGridSpace::mallinfo'
> alu2d/handle.h:1044: error: forward declaration of 'struct  
> ALUGridSpace::mallinfo'
> alu2d/handle.cc:344: error: invalid use of incomplete type 'struct  
> ALUGridSpace::mallinfo'
> alu2d/handle.h:1044: error: forward declaration of 'struct  
> ALUGridSpace::mallinfo'
> alu2d/handle.cc:347: error: invalid use of incomplete type 'struct  
> ALUGridSpace::mallinfo'
> alu2d/handle.h:1044: error: forward declaration of 'struct  
> ALUGridSpace::mallinfo'
> alu2d/handle.cc:348: error: invalid use of incomplete type 'struct  
> ALUGridSpace::mallinfo'
> alu2d/handle.h:1044: error: forward declaration of 'struct  
> ALUGridSpace::mallinfo'
> alu2d/handle.cc:349: error: invalid use of incomplete type 'struct  
> ALUGridSpace::mallinfo'
> alu2d/handle.h:1044: error: forward declaration of 'struct  
> ALUGridSpace::mallinfo'
> alu2d/handle.cc:350: error: invalid use of incomplete type 'struct  
> ALUGridSpace::mallinfo'
> alu2d/handle.h:1044: error: forward declaration of 'struct  
> ALUGridSpace::mallinfo'
> make[3]: *** [alugrid_2d.lo] Error 1
> make[2]: *** [all-recursive] Error 1
> make[1]: *** [all-recursive] Error 1
> make: *** [all] Error 2
> seraphor-129129145087:ALUGrid-1.13 benediktoswald$
>
>
>
> I would appreciate any ideas and suggestions on this.
> Maybe, this problem is linked to the malloc.h header file ?
>
> Have a great day, Benedikt
>
>
> ------------------------------------------------------------------------------------------------------------------
> Benedikt Oswald, Dr. sc. techn., dipl. El. Ing. ETH, www.psi.ch,  
> Computational Accelerator Scientist
> Paul Scherrer  Institute (PSI), CH-5232 Villigen, Suisse, benedikt.oswald at psi.ch 
> , +41(0)56 310 32 12
> quamquam sint sub aqua, sub aqua maledicere temptant. http://maxwell.psi.ch/amaswiki/index.php/User:BenediktOswald
> ------------------------------------------------------------------------------------------------------------------
>
>
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