[Dune] [Fwd: Re: ALUGrid-1.13 on Mac OS X, problems configuring]

Andreas Dedner dedner at mathematik.uni-freiburg.de
Fri Feb 6 22:19:36 CET 2009 

I am workling with Benedict on this and we have made some progress...

Sven Kaulmann wrote:
> Hi there,
>
> I am having exactly the same problem (also on Mac OS X 10.5.6) and for
> me removing the include was no solution, the error stays the same.
>
> Greetings,
> Sven Kaulmann
> Universitaet Muenster
>
>
> Am 06.02.2009 um 12:36 schrieb Rene Milk:
>
>>
>>
>> could you try, if the code compiles if you remove the
>>
>> #include <malloc.h>
>>
>> from the file alu2d/handle.h ?
>>
>> If g++ it seems to be ok.
>>
>> Regards
>>
>> Robert
>> -- =
>>
>>
>>   Robert Kl=F6fkorn           <robertk at mathematik.uni-freiburg.de>
>>
>>   Mathematisches Institut              Tel: +49 (0) 761 203 5631
>>   Abt. f=FCr Angewandte Mathematik       Fax: +49 (0) 761 203 5632
>>   Universit=E4t Freiburg
>>   Hermann-Herder-Str. 10
>>   79104 Freiburg
>>
>>   http://www.mathematik.uni-freiburg.de/IAM/homepages/robertk
>>
>> _______________________________________________
>> Dune mailing list
>> Dune at dune-project.org
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>>
>>
>>
>>
>>
>> although it might be slightly off-topic, I nevertheless would like
>> to ask for advice with compiling ALUGrid-1.13 on Mac OS X, 10.5.6:
>>
>> I have successfully managed to configure ALUGrid on mac os x,
>> with one problem:
>>
>> The configure only succeeded if the additional directory
>> /usr/include/malloc was given in the CPPFLAGS, without
>> this option it would not succeed. It seems that this is standard
>> on Mac, but the configure would not find it ?
>>
>> The second, more severe problem is:
>>
>>
>> seraphor-129129145087:ALUGrid-1.13 benediktoswald$ make
>> make  all-recursive
>> Making all in src
>> Making all in serial
>> make[3]: Nothing to be done for `all'.
>> Making all in parallel
>> make[3]: Nothing to be done for `all'.
>> Making all in duneinterface
>> make[3]: Nothing to be done for `all'.
>> Making all in alu2d
>> make[3]: Nothing to be done for `all'.
>> /bin/sh ../libtool --tag=CXX   --mode=compile gcc-4.2 -DHAVE_CONFIG_H 
>> -I. -I..  -I/usr/include/malloc   
>> -I/Users/benediktoswald/extlib/metis-4.0/Lib -I./serial -I./parallel 
>> -I./duneinterface -I./alu2d  -I/usr/include/malloc   -g -O2 -MT 
>> alugrid_serial.lo -MD -MP -MF .deps/alugrid_serial.Tpo -c -o 
>> alugrid_serial.lo alugrid_serial.cc
>> gcc-4.2 -DHAVE_CONFIG_H -I. -I.. -I/usr/include/malloc 
>> -I/Users/benediktoswald/extlib/metis-4.0/Lib -I./serial -I./parallel 
>> -I./duneinterface -I./alu2d -I/usr/include/malloc -g -O2 -MT 
>> alugrid_serial.lo -MD -MP -MF .deps/alugrid_serial.Tpo -c 
>> alugrid_serial.cc -o alugrid_serial.o
>> alugrid_serial.cc:33:2: warning: #warning -- Compiling ALUGrid code 
>> in debug mode!!! Use -DNDEBUG to get more optimized code!!!
>> mv -f .deps/alugrid_serial.Tpo .deps/alugrid_serial.Plo
>> /bin/sh ../libtool --tag=CXX   --mode=compile gcc-4.2 -DHAVE_CONFIG_H 
>> -I. -I..  -I/usr/include/malloc   
>> -I/Users/benediktoswald/extlib/metis-4.0/Lib -I./serial -I./parallel 
>> -I./duneinterface -I./alu2d  -I/usr/include/malloc   -g -O2 -MT 
>> alugrid_parallel.lo -MD -MP -MF .deps/alugrid_parallel.Tpo -c -o 
>> alugrid_parallel.lo alugrid_parallel.cc
>> gcc-4.2 -DHAVE_CONFIG_H -I. -I.. -I/usr/include/malloc 
>> -I/Users/benediktoswald/extlib/metis-4.0/Lib -I./serial -I./parallel 
>> -I./duneinterface -I./alu2d -I/usr/include/malloc -g -O2 -MT 
>> alugrid_parallel.lo -MD -MP -MF .deps/alugrid_parallel.Tpo -c 
>> alugrid_parallel.cc -o alugrid_parallel.o
>> alugrid_parallel.cc:33:2: warning: #warning -- Compiling ALUGrid code 
>> in debug mode!!! Use -DNDEBUG to get more optimized code!!!
>> In file included from alugrid_parallel.cc:84:
>> parallel/party_lib.c:31:2: warning: #warning -- Compiling parallel 
>> version without PARTY_LIB !!!
>> mv -f .deps/alugrid_parallel.Tpo .deps/alugrid_parallel.Plo
>> /bin/sh ../libtool --tag=CXX   --mode=compile gcc-4.2 -DHAVE_CONFIG_H 
>> -I. -I..  -I/usr/include/malloc   
>> -I/Users/benediktoswald/extlib/metis-4.0/Lib -I./serial -I./parallel 
>> -I./duneinterface -I./alu2d  -I/usr/include/malloc   -g -O2 -MT 
>> alugrid_2d.lo -MD -MP -MF .deps/alugrid_2d.Tpo -c -o alugrid_2d.lo 
>> alugrid_2d.cc
>> gcc-4.2 -DHAVE_CONFIG_H -I. -I.. -I/usr/include/malloc 
>> -I/Users/benediktoswald/extlib/metis-4.0/Lib -I./serial -I./parallel 
>> -I./duneinterface -I./alu2d -I/usr/include/malloc -g -O2 -MT 
>> alugrid_2d.lo -MD -MP -MF .deps/alugrid_2d.Tpo -c alugrid_2d.cc -o 
>> alugrid_2d.o
>> alugrid_2d.cc:33:2: warning: #warning -- Compiling ALUGrid code in 
>> debug mode!!! Use -DNDEBUG to get more optimized code!!!
>> In file included from alugrid_2d.cc:39:
>> alu2d/handle.cc: In function 'void 
>> ALUGridSpace::get_memory(ALUGridSpace::mallinfo&)':
>> alu2d/handle.cc:294: error: invalid use of incomplete type 'struct 
>> ALUGridSpace::mallinfo'
>> alu2d/handle.h:1044: error: forward declaration of 'struct 
>> ALUGridSpace::mallinfo'
>> alu2d/handle.cc: In function 'void 
>> ALUGridSpace::get_memory_diff(ALUGridSpace::mallinfo&)':
>> alu2d/handle.cc:298: error: variable 'ALUGridSpace::mallinfo meminfo' 
>> has initializer but incomplete type
>> alu2d/handle.cc:298: error: invalid use of incomplete type 'struct 
>> ALUGridSpace::mallinfo'
>> alu2d/handle.h:1044: error: forward declaration of 'struct 
>> ALUGridSpace::mallinfo'
>> alu2d/handle.cc:299: error: invalid use of incomplete type 'struct 
>> ALUGridSpace::mallinfo'
>> alu2d/handle.h:1044: error: forward declaration of 'struct 
>> ALUGridSpace::mallinfo'
>> alu2d/handle.cc:300: error: invalid use of incomplete type 'struct 
>> ALUGridSpace::mallinfo'
>> alu2d/handle.h:1044: error: forward declaration of 'struct 
>> ALUGridSpace::mallinfo'
>> alu2d/handle.cc:301: error: invalid use of incomplete type 'struct 
>> ALUGridSpace::mallinfo'
>> alu2d/handle.h:1044: error: forward declaration of 'struct 
>> ALUGridSpace::mallinfo'
>> alu2d/handle.cc:302: error: invalid use of incomplete type 'struct 
>> ALUGridSpace::mallinfo'
>> alu2d/handle.h:1044: error: forward declaration of 'struct 
>> ALUGridSpace::mallinfo'
>> alu2d/handle.cc:303: error: invalid use of incomplete type 'struct 
>> ALUGridSpace::mallinfo'
>> alu2d/handle.h:1044: error: forward declaration of 'struct 
>> ALUGridSpace::mallinfo'
>> alu2d/handle.cc:304: error: invalid use of incomplete type 'struct 
>> ALUGridSpace::mallinfo'
>> alu2d/handle.h:1044: error: forward declaration of 'struct 
>> ALUGridSpace::mallinfo'
>> alu2d/handle.cc:305: error: invalid use of incomplete type 'struct 
>> ALUGridSpace::mallinfo'
>> alu2d/handle.h:1044: error: forward declaration of 'struct 
>> ALUGridSpace::mallinfo'
>> alu2d/handle.cc:306: error: invalid use of incomplete type 'struct 
>> ALUGridSpace::mallinfo'
>> alu2d/handle.h:1044: error: forward declaration of 'struct 
>> ALUGridSpace::mallinfo'
>> alu2d/handle.cc:307: error: invalid use of incomplete type 'struct 
>> ALUGridSpace::mallinfo'
>> alu2d/handle.h:1044: error: forward declaration of 'struct 
>> ALUGridSpace::mallinfo'
>> alu2d/handle.cc:308: error: invalid use of incomplete type 'struct 
>> ALUGridSpace::mallinfo'
>> alu2d/handle.h:1044: error: forward declaration of 'struct 
>> ALUGridSpace::mallinfo'
>> alu2d/handle.cc: In function 'void 
>> ALUGridSpace::write_memory(std::ostream&, char*)':
>> alu2d/handle.cc:312: error: variable 'ALUGridSpace::mallinfo meminfo' 
>> has initializer but incomplete type
>> alu2d/handle.cc:312: error: invalid use of incomplete type 'struct 
>> ALUGridSpace::mallinfo'
>> alu2d/handle.h:1044: error: forward declaration of 'struct 
>> ALUGridSpace::mallinfo'
>> alu2d/handle.cc: In function 'void 
>> ALUGridSpace::write_memory(std::ostream&, char*, 
>> ALUGridSpace::mallinfo&)':
>> alu2d/handle.cc:323: error: invalid use of incomplete type 'struct 
>> ALUGridSpace::mallinfo'
>> alu2d/handle.h:1044: error: forward declaration of 'struct 
>> ALUGridSpace::mallinfo'
>> alu2d/handle.cc:326: error: invalid use of incomplete type 'struct 
>> ALUGridSpace::mallinfo'
>> alu2d/handle.h:1044: error: forward declaration of 'struct 
>> ALUGridSpace::mallinfo'
>> alu2d/handle.cc:327: error: invalid use of incomplete type 'struct 
>> ALUGridSpace::mallinfo'
>> alu2d/handle.h:1044: error: forward declaration of 'struct 
>> ALUGridSpace::mallinfo'
>> alu2d/handle.cc:328: error: invalid use of incomplete type 'struct 
>> ALUGridSpace::mallinfo'
>> alu2d/handle.h:1044: error: forward declaration of 'struct 
>> ALUGridSpace::mallinfo'
>> alu2d/handle.cc:329: error: invalid use of incomplete type 'struct 
>> ALUGridSpace::mallinfo'
>> alu2d/handle.h:1044: error: forward declaration of 'struct 
>> ALUGridSpace::mallinfo'
>> alu2d/handle.cc: In function 'void 
>> ALUGridSpace::write_memory_diff(std::ostream&, char*, 
>> ALUGridSpace::mallinfo&)':
>> alu2d/handle.cc:334: error: variable 'ALUGridSpace::mallinfo meminfo' 
>> has initializer but incomplete type
>> alu2d/handle.cc:334: error: invalid use of incomplete type 'struct 
>> ALUGridSpace::mallinfo'
>> alu2d/handle.h:1044: error: forward declaration of 'struct 
>> ALUGridSpace::mallinfo'
>> alu2d/handle.cc:335: error: invalid use of incomplete type 'struct 
>> ALUGridSpace::mallinfo'
>> alu2d/handle.h:1044: error: forward declaration of 'struct 
>> ALUGridSpace::mallinfo'
>> alu2d/handle.cc:336: error: invalid use of incomplete type 'struct 
>> ALUGridSpace::mallinfo'
>> alu2d/handle.h:1044: error: forward declaration of 'struct 
>> ALUGridSpace::mallinfo'
>> alu2d/handle.cc:337: error: invalid use of incomplete type 'struct 
>> ALUGridSpace::mallinfo'
>> alu2d/handle.h:1044: error: forward declaration of 'struct 
>> ALUGridSpace::mallinfo'
>> alu2d/handle.cc:338: error: invalid use of incomplete type 'struct 
>> ALUGridSpace::mallinfo'
>> alu2d/handle.h:1044: error: forward declaration of 'struct 
>> ALUGridSpace::mallinfo'
>> alu2d/handle.cc:339: error: invalid use of incomplete type 'struct 
>> ALUGridSpace::mallinfo'
>> alu2d/handle.h:1044: error: forward declaration of 'struct 
>> ALUGridSpace::mallinfo'
>> alu2d/handle.cc:340: error: invalid use of incomplete type 'struct 
>> ALUGridSpace::mallinfo'
>> alu2d/handle.h:1044: error: forward declaration of 'struct 
>> ALUGridSpace::mallinfo'
>> alu2d/handle.cc:341: error: invalid use of incomplete type 'struct 
>> ALUGridSpace::mallinfo'
>> alu2d/handle.h:1044: error: forward declaration of 'struct 
>> ALUGridSpace::mallinfo'
>> alu2d/handle.cc:342: error: invalid use of incomplete type 'struct 
>> ALUGridSpace::mallinfo'
>> alu2d/handle.h:1044: error: forward declaration of 'struct 
>> ALUGridSpace::mallinfo'
>> alu2d/handle.cc:343: error: invalid use of incomplete type 'struct 
>> ALUGridSpace::mallinfo'
>> alu2d/handle.h:1044: error: forward declaration of 'struct 
>> ALUGridSpace::mallinfo'
>> alu2d/handle.cc:344: error: invalid use of incomplete type 'struct 
>> ALUGridSpace::mallinfo'
>> alu2d/handle.h:1044: error: forward declaration of 'struct 
>> ALUGridSpace::mallinfo'
>> alu2d/handle.cc:347: error: invalid use of incomplete type 'struct 
>> ALUGridSpace::mallinfo'
>> alu2d/handle.h:1044: error: forward declaration of 'struct 
>> ALUGridSpace::mallinfo'
>> alu2d/handle.cc:348: error: invalid use of incomplete type 'struct 
>> ALUGridSpace::mallinfo'
>> alu2d/handle.h:1044: error: forward declaration of 'struct 
>> ALUGridSpace::mallinfo'
>> alu2d/handle.cc:349: error: invalid use of incomplete type 'struct 
>> ALUGridSpace::mallinfo'
>> alu2d/handle.h:1044: error: forward declaration of 'struct 
>> ALUGridSpace::mallinfo'
>> alu2d/handle.cc:350: error: invalid use of incomplete type 'struct 
>> ALUGridSpace::mallinfo'
>> alu2d/handle.h:1044: error: forward declaration of 'struct 
>> ALUGridSpace::mallinfo'
>> make[3]: *** [alugrid_2d.lo] Error 1
>> make[2]: *** [all-recursive] Error 1
>> make[1]: *** [all-recursive] Error 1
>> make: *** [all] Error 2
>> seraphor-129129145087:ALUGrid-1.13 benediktoswald$
>>
>>
>>
>> I would appreciate any ideas and suggestions on this.
>> Maybe, this problem is linked to the malloc.h header file ?
>>
>> Have a great day, Benedikt
>>
>>
>> ------------------------------------------------------------------------------------------------------------------ 
>>
>> Benedikt Oswald, Dr. sc. techn., dipl. El. Ing. ETH, www.psi.ch, 
>> Computational Accelerator Scientist
>> Paul Scherrer  Institute (PSI), CH-5232 Villigen, Suisse, 
>> benedikt.oswald at psi.ch, +41(0)56 310 32 12
>> quamquam sint sub aqua, sub aqua maledicere temptant. 
>> http://maxwell.psi.ch/amaswiki/index.php/User:BenediktOswald
>> ------------------------------------------------------------------------------------------------------------------ 
>>
>>
>>
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>>
>>
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