[Dune] Dune-grid-howto build problem

Vogelbacher Florian Florian.Vogelbacher at psi.ch
Fri Sep 3 10:40:41 CEST 2010


Dear Dune,

Setting up a new dune installation I got problems in compiling the 
dune-grid-howto. I'm not totaly sure if it is related to dune or to 
ALUGrid, but maybe you can see more in the logs.

Thanks a lot in advance!
Florian

1.) dune-common version
URL: https://svn.dune-project.org/svn/dune-common/trunk
Repository Root: https://svn.dune-project.org/svn/dune-common
Repository UUID: 419231ca-4411-0410-aba2-fc6cf8c4f609
Revision: 6119
Node Kind: directory
Schedule: normal
Last Changed Author: sander
Last Changed Rev: 6119
Last Changed Date: 2010-09-02 08:47:05 +0200 (Thu, 02 Sep 2010)

2.) dune-grid version
URL: https://svn.dune-project.org/svn/dune-grid/trunk
Repository Root: https://svn.dune-project.org/svn/dune-grid
Repository UUID: f82f27de-4411-0410-b156-930a902cda50
Revision: 6928
Node Kind: directory
Schedule: normal
Last Changed Author: christi
Last Changed Rev: 6928
Last Changed Date: 2010-09-01 22:25:03 +0200 (Wed, 01 Sep 2010)

4.) dune-istl version
URL: https://svn.dune-project.org/svn/dune-istl/trunk
Repository Root: https://svn.dune-project.org/svn/dune-istl
Repository UUID: 8c7282f0-4411-0410-8e4f-cdd3e049afb8
Revision: 1286
Node Kind: directory
Schedule: normal
Last Changed Author: christi
Last Changed Rev: 1286
Last Changed Date: 2010-09-01 22:33:34 +0200 (Wed, 01 Sep 2010)

5.) dune-localfunction
URL: https://svn.dune-project.org/svn/dune-localfunctions/trunk
Repository Root: https://svn.dune-project.org/svn/dune-localfunctions
Repository UUID: 99935a23-074d-4cae-87b7-4e54ca08e5e1
Revision: 885
Node Kind: directory
Schedule: normal
Last Changed Author: sander
Last Changed Rev: 884
Last Changed Date: 2010-06-22 20:46:31 +0200 (Tue, 22 Jun 2010)
Now run ./configure to setup dune-grid-howto

6.) gcc and system
$ gcc --version
gcc (GCC) 4.3.1
$ uname -a
Linux felsim01 2.6.18-194.8.1.el5 #1 SMP Thu Jul 1 16:05:53 EDT 2010 
x86_64 x86_64 x86_64 GNU/Linux

7.) finally my problem :-)
--- calling configure for dune-grid-howto ---
----- using default flags $CONFIGURE_FLAGS from 
/home4/vogelbacher_f/svnwork/dune-trunk/dune.felsim.opts -----
./configure CXX='mpicxx' CC='mpicc' LD='mpicxx' 
CXXFLAGS='-DMPICH_IGNORE_CXX_SEEK -O2' CPPFLAGS='-DMPICH_IGNORE_CXX_SEEK 
-O2' LDFLAGS=' ' --disable-documentation --enable-parallel 
--enable-debug-output --enable-experimental-hades3delectrostatic 
--with-boost='/home4/vogelbacher_f/extlib-scratch3-felsim/boost-trunk' 
--with-metis='/home4/vogelbacher_f/extlib-scratch3-felsim/metis-4.0' 
--with-rlog='/home4/vogelbacher_f/extlib-scratch3-felsim/rlog-1.4' 
--with-alugrid='/home4/vogelbacher_f/extlib-scratch3-felsim/ALUGrid-1.22' 
"--with-dune-common=/home4/vogelbacher_f/svnwork/dune-trunk/dune-common/" 
"--with-dune-grid=/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/" 
"--with-dune-istl=/home4/vogelbacher_f/svnwork/dune-trunk/dune-istl/" 
ACLOCAL_AMFLAGS="-I . -I 
/home4/vogelbacher_f/svnwork/dune-trunk/dune-common/m4 -I 
/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/m4 -I 
/home4/vogelbacher_f/svnwork/dune-trunk/dune-istl/m4"
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking how to create a pax tar archive... gnutar
checking how to create a pax tar archive... (cached) gnutar
checking for latex... latex
checking for bibtex... bibtex
checking for dvipdf... dvipdf
checking for dvips... dvips
checking for wml... no
checking for tex4ht... no
checking for mk4ht... no
checking for t4ht... no
checking for convert... convert
checking for inkscape... no
checking for doxygen... doxygen
checking for latex... (cached) latex
checking for bibtex... (cached) bibtex
checking for dvipdf... (cached) dvipdf
checking for dvips... (cached) dvips
checking for wml... true
checking for dot... dot
checking for perl... perl
checking for convert... (cached) convert
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for style of include used by make... GNU
checking for gcc... mpicc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether mpicc accepts -g... yes
checking for mpicc option to accept ANSI C... none needed
checking dependency style of mpicc... gcc3
checking dependency style of mpicc... (cached) gcc3
checking how to run the C preprocessor... mpicc -E
checking whether we are using the GNU C++ compiler... yes
checking whether mpicxx accepts -g... yes
checking dependency style of mpicxx... gcc3
checking dependency style of mpicxx... (cached) gcc3
checking how to run the C++ preprocessor... mpicxx -E
checking for g77... g77
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether g77 accepts -g... yes
checking build system type... x86_64-redhat-linux-gnu
checking host system type... x86_64-redhat-linux-gnu
checking for a sed that does not truncate output... /bin/sed
checking for egrep... grep -E
checking for ld used by mpicc... mpicxx
checking if the linker (mpicxx) is GNU ld... no
checking for mpicxx option to reload object files... -r
checking for BSD-compatible nm... /usr/bin/nm -B
checking whether ln -s works... yes
checking how to recognise dependent libraries... pass_all
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking dlfcn.h usability... yes
checking dlfcn.h presence... yes
checking for dlfcn.h... yes
checking how to run the C++ preprocessor... mpicxx -E
checking the maximum length of command line arguments... 32768
checking command to parse /usr/bin/nm -B output from mpicc object... ok
checking for objdir... .libs
checking for ar... ar
checking for ranlib... ranlib
checking for strip... strip
checking if mpicc supports -fno-rtti -fno-exceptions... no
checking for mpicc option to produce PIC... -fPIC
checking if mpicc PIC flag -fPIC works... yes
checking if mpicc static flag -static works... no
checking if mpicc supports -c -o file.o... yes
checking whether the mpicc linker (mpicxx -m elf_x86_64) supports shared 
libraries... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... unsupported
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... no
checking whether to build shared libraries... no
checking whether to build static libraries... yes
configure: creating libtool
appending configuration tag "CXX" to libtool
checking for ld used by mpicxx... mpicxx -m elf_x86_64
checking if the linker (mpicxx -m elf_x86_64) is GNU ld... no
checking whether the mpicxx linker (mpicxx -m elf_x86_64) supports 
shared libraries... yes
checking for mpicxx option to produce PIC... -fPIC
checking if mpicxx PIC flag -fPIC works... yes
checking if mpicxx static flag -static works... no
checking if mpicxx supports -c -o file.o... yes
checking whether the mpicxx linker (mpicxx -m elf_x86_64) supports 
shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... unsupported
appending configuration tag "F77" to libtool
checking if libtool supports shared libraries... no
checking whether to build shared libraries... no
checking whether to build static libraries... yes
checking for g77 option to produce PIC... -fPIC
checking if g77 PIC flag -fPIC works... yes
checking if g77 static flag -static works... yes
checking if g77 supports -c -o file.o... yes
checking whether the g77 linker (mpicxx -m elf_x86_64) supports shared 
libraries... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... unsupported
checking for ranlib... (cached) ranlib
checking whether compiler is officially supported by DUNE... yes
checking whether g++ accepts -std=c++0x... yes
checking whether static_assert is supported... yes
checking whether nullptr is supported... no
checking type_traits usability... yes
checking type_traits presence... yes
checking for type_traits... yes
checking tr1/type_traits usability... yes
checking tr1/type_traits presence... yes
checking for tr1/type_traits... yes
checking array usability... yes
checking array presence... yes
checking for array... yes
checking tr1/array usability... yes
checking tr1/array presence... yes
checking for tr1/array... yes
checking tuple usability... yes
checking tuple presence... yes
checking for tuple... yes
checking tr1/tuple usability... yes
checking tr1/tuple presence... yes
checking for tr1/tuple... yes
checking memory usability... yes
checking memory presence... yes
checking for memory... yes
checking tr1/memory usability... yes
checking tr1/memory presence... yes
checking for tr1/memory... yes
checking boost/shared_ptr.hpp usability... yes
checking boost/shared_ptr.hpp presence... yes
checking for boost/shared_ptr.hpp... yes
checking the location of shared_ptr header file...
checking whether compiling C++ code works... yes
checking whether linking C++ objects works... yes
checking for __attribute__((deprecated))... yes
checking rpc/rpc.h usability... yes
checking rpc/rpc.h presence... yes
checking for rpc/rpc.h... yes
checking for mpicc... mpicc
checking for MPI_Init... yes
checking for mpi.h... yes
configure: Trying to identify the version of MPI compiler mpicc
checking for lam... no
checking for mpich... no
checking for OpenMPI... yes
checking whether compiling with OpenMPI works... yes
configure: WARNING: Disabled test whether running with OpenMPI works.
checking for MPI_Finalized in -lm... yes
checking for an ANSI C-conforming const... yes
checking for inline... inline
checking for size_t... yes
checking whether struct tm is in sys/time.h or time.h... time.h
checking for stdlib.h... (cached) yes
checking for GNU libc compatible malloc... yes
checking malloc.h usability... yes
checking malloc.h presence... yes
checking for malloc.h... yes
checking for string.h... (cached) yes
checking for pow in -lm... yes
checking for sqrt... yes
checking for strchr... yes
checking for dune-common installation or source tree... found in 
/home4/vogelbacher_f/svnwork/dune-trunk/dune-common
checking dune/common/stdstreams.hh usability... yes
checking dune/common/stdstreams.hh presence... yes
checking for dune/common/stdstreams.hh... yes
checking for libdunecommon... yes
checking for X... libraries /usr/lib64, headers
checking for gethostbyname... yes
checking for connect... yes
checking for remove... yes
checking for shmat... yes
checking for IceConnectionNumber in -lICE... yes
checking for the pthreads library -lpthreads... no
checking whether pthreads work without any flags... yes
checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE
checking if more special flags are required for pthreads... no
checking for cc_r... mpicc
checking whether we are using the Microsoft C compiler... no
checking windows.h usability... no
checking windows.h presence... no
checking for windows.h... no
checking for OpenGL library... -lGL
checking grape.h usability... no
checking grape.h presence... no
checking for grape.h... no
configure: searching for ALBERTA in /usr...
configure: searching for ALBERTA in /usr/local...
configure: searching for ALBERTA in /usr/local/alberta...
configure: searching for ALBERTA in /opt/alberta...
checking alberta.h usability... no
checking alberta.h presence... no
checking for alberta.h... no
configure: WARNING: alberta.h not found in -I/include/alberta
checking /usr/local/ug/include//gm.h usability... no
checking /usr/local/ug/include//gm.h presence... no
checking for /usr/local/ug/include//gm.h... no
configure: WARNING: gm.h not found in /usr/local/ug/include/
checking for amiramesh/AmiraMesh.h... no
configure: WARNING: AmiraMesh.h not found in 
/usr/local/amiramesh/include/amiramesh
checking psurface.h usability... no
checking psurface.h presence... no
checking for psurface.h... no
checking ALUGrid version >= 1.22... yes (ALUGrid-1.22)
checking alugrid_serial.h usability... yes
checking alugrid_serial.h presence... yes
checking for alugrid_serial.h... yes
checking alugrid_parallel.h usability... yes
checking alugrid_parallel.h presence... yes
checking for alugrid_parallel.h... yes
checking for malloc in -lalugrid... yes
configure: searching for GMP in /usr...
checking gmpxx.h usability... yes
checking gmpxx.h presence... yes
checking for gmpxx.h... yes
checking for __gmpz_abs in -L/usr/lib -lgmp... yes
checking for alglib4dune (>=1.0) via pkgconfig... no
checking for dune-grid installation or source tree... found in 
/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid
checking dune/grid/onedgrid.hh usability... yes
checking dune/grid/onedgrid.hh presence... yes
checking for dune/grid/onedgrid.hh... yes
checking for libdunegrid... yes
checking for ParMETIS library... failed
checking how to get verbose linking output from g77... -v
checking for Fortran libraries of g77... 
-L/usr/lib/gcc/x86_64-redhat-linux/3.4.6 
-L/usr/lib/gcc/x86_64-redhat-linux/3.4.6/../../../../lib64 
-L/usr/lib/gcc/x86_64-redhat-linux/3.4.6/../../.. -L/lib/../lib64 
-L/usr/lib/../lib64 -lfrtbegin -lg2c -lm -lgcc_s
checking for dummy main to link with Fortran libraries... none
checking for Fortran name-mangling scheme... lower case, underscore, 
extra underscore
checking for sgemm_... no
checking for ATL_xerbla in -latlas... no
checking for sgemm_ in -lblas... yes
checking for dgemm_ in -ldgemm... no
checking for sgemm_ in -lcxml... no
checking for sgemm_ in -ldxml... no
checking for sgemm_ in -lscs... no
checking for sgemm_ in -lcomplib.sgimath... no
checking for sgemm_ in -lblas... (cached) yes
checking for sgemm_ in -lessl... no
checking for sgemm_ in -lblas... (cached) yes
checking dsp_defs.h usability... no
checking dsp_defs.h presence... no
checking for dsp_defs.h... no
configure: WARNING: dsp_defs.h not found in /usr/local/SRC with 
-DMPICH_IGNORE_CXX_SEEK -O2 -I/usr/local/SRC -DENABLE_SUPERLU
checking SuperLU... no
checking for SuperLUDist library... checking superlu_ddefs.h usability... no
checking superlu_ddefs.h presence... no
checking for superlu_ddefs.h... no
configure: WARNING: superlu_ddefs.h not found in /usr/local/SRC with 
-DMPICH_IGNORE_CXX_SEEK -O2 -I/usr/local/SRC 
-I/opt/mpi/openmpi-1.3.3-gcc-4.3.1/include -pthread -DMPIPP_H -DENABLE_MPI=1
checking SuperLUDist in /usr/local... failed
checking for cheev_... no
checking for cheev_ in -llapack... yes
checking for METIS library... yes
checking for METIS_PartMeshDual in -lmetis... yes
checking for metis.h... yes
xyes
checking METIS in 
/home4/vogelbacher_f/extlib-scratch3-felsim/metis-4.0... ok
checking for boostlib >= 1.20.0... yes
checking whether the Boost::FUSION library is available... yes
checking for dune-istl installation or source tree... found in 
/home4/vogelbacher_f/svnwork/dune-trunk/dune-istl
checking dune/istl/istlexception.hh usability... yes
checking dune/istl/istlexception.hh presence... yes
checking for dune/istl/istlexception.hh... yes
configure: dune-istl does not provide libs
configure: creating ./config.status
config.status: creating Makefile
config.status: creating doc/Makefile
config.status: creating doc/config.tex
config.status: creating grids/Makefile
config.status: creating dune-grid-howto.pc
config.status: creating config.h
config.status: executing depfiles commands

Found the following Dune-components:

----------------------------------------

dune-common.............: version 2.1-svn
dune-grid...............: version 2.1-svn
dune-istl...............: version 2.1-svn
ALBERTA.................: no
ALUGrid.................: version 1.22
AlgLib for DUNE.........: no
AmiraMesh...............: no
BLAS....................: yes
GMP.....................: yes
Grape...................: no
METIS...................: yes
MPI.....................: yes (OpenMPI)
OpenGL..................: yes
ParMETIS................: no
SuperLU-DIST............: no
SuperLU.................: no
UG......................: no
psurface................: no

----------------------------------------

See ./configure --help and config.log for reasons why a component wasn't 
found

--- calling make for dune-grid-howto ---
make
make  all-recursive
make[1]: Entering directory 
`/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid-howto'
Making all in doc
make[2]: Entering directory 
`/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid-howto/doc'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory 
`/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid-howto/doc'
Making all in grids
make[2]: Entering directory 
`/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid-howto/grids'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory 
`/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid-howto/grids'
make[2]: Entering directory 
`/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid-howto'
if mpicxx -std=c++0x -DHAVE_CONFIG_H -I. -I. -I. 
-I/home4/vogelbacher_f/svnwork/dune-trunk/dune-common 
-I/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid 
-I/home4/vogelbacher_f/svnwork/dune-trunk/dune-istl -I. 
-DMPICH_IGNORE_CXX_SEEK -O2 
-I/home4/vogelbacher_f/extlib-scratch3-felsim/boost-trunk/include 
-I/opt/mpi/openmpi-1.3.3-gcc-4.3.1/include -pthread -DMPIPP_H 
-DENABLE_MPI=1 -DMPICH_IGNORE_CXX_SEEK -O2 
-I/home4/vogelbacher_f/extlib-scratch3-felsim/boost-trunk/include 
-I/home4/vogelbacher_f/svnwork/dune-trunk/dune-common 
-I/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid 
-I/home4/vogelbacher_f/svnwork/dune-trunk/dune-istl 
-I/opt/mpi/openmpi-1.3.3-gcc-4.3.1/include -pthread -DMPIPP_H 
-DENABLE_MPI=1 -I/home4/vogelbacher_f/svnwork/dune-trunk/dune-common 
-DGRIDDIM=2 -DWORLDDIM=2 -DYASPGRID 
-I/opt/mpi/openmpi-1.3.3-gcc-4.3.1/include -pthread -DMPIPP_H 
-DENABLE_MPI=1 
-I/home4/vogelbacher_f/extlib-scratch3-felsim/ALUGrid-1.22/include 
-I/home4/vogelbacher_f/extlib-scratch3-felsim/ALUGrid-1.22/include/serial 
-I/home4/vogelbacher_f/extlib-scratch3-felsim/ALUGrid-1.22/include/duneinterface 
-DENABLE_ALUGRID 
-I/home4/vogelbacher_f/extlib-scratch3-felsim/ALUGrid-1.22/include/parallel 
-I/usr/include -DENABLE_GMP=1 
-I/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid 
-I/home4/vogelbacher_f/svnwork/dune-trunk/dune-istl 
-DMPICH_IGNORE_CXX_SEEK -O2 -MT gettingstarted-gettingstarted.o -MD -MP 
-MF ".deps/gettingstarted-gettingstarted.Tpo" -c -o 
gettingstarted-gettingstarted.o `test -f 'gettingstarted.cc' || echo 
'./'`gettingstarted.cc; \
         then mv -f ".deps/gettingstarted-gettingstarted.Tpo" 
".deps/gettingstarted-gettingstarted.Po"; else rm -f 
".deps/gettingstarted-gettingstarted.Tpo"; exit 1; fi
/bin/sh ./libtool --tag=CXX --mode=link mpicxx -std=c++0x 
-DMPICH_IGNORE_CXX_SEEK -O2 
-L/home4/vogelbacher_f/extlib-scratch3-felsim/boost-trunk/ -o 
gettingstarted  gettingstarted-gettingstarted.o 
-L/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/lib -ldunegrid 
-L/home4/vogelbacher_f/svnwork/dune-trunk/dune-common/lib -ldunecommon 
-L/home4/vogelbacher_f/extlib-scratch3-felsim/boost-trunk/ 
       -L/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/lib 
-ldunegrid -L/usr/lib -lgmpxx -lgmp 
-L/home4/vogelbacher_f/extlib-scratch3-felsim/ALUGrid-1.22/lib -lalugrid 
-pthread -L/opt/mpi/openmpi-1.3.3-gcc-4.3.1/lib -lmpi -lopen-rte 
-lopen-pal -ldl -Wl,--export-dynamic -lnsl -lutil -lm -ldl  -lGL 
-L/usr/lib64 -lX11  -lm 
-L/home4/vogelbacher_f/svnwork/dune-trunk/dune-common/lib -ldunecommon 
-pthread -L/opt/mpi/openmpi-1.3.3-gcc-4.3.1/lib -lmpi -lopen-rte 
-lopen-pal -ldl -Wl,--export-dynamic -lnsl -lutil -lm -ldl 
-L/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/lib -ldunegrid 
-L/home4/vogelbacher_f/svnwork/dune-trunk/dune-common/lib -ldunecommon 
-L/home4/vogelbacher_f/svnwork/dune-trunk/dune-common/lib -ldunecommon 
  -L/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/lib -ldunegrid 
-L/home4/vogelbacher_f/svnwork/dune-trunk/dune-common/lib -ldunecommon 
   -lm   -pthread -L/opt/mpi/openmpi-1.3.3-gcc-4.3.1/lib -lmpi 
-lopen-rte -lopen-pal -ldl -Wl,--export-dynamic -lnsl -lutil -lm -ldl -lm
mpicxx -std=c++0x -DMPICH_IGNORE_CXX_SEEK -O2 -o gettingstarted 
gettingstarted-gettingstarted.o -pthread -Wl,--export-dynamic -pthread 
-Wl,--export-dynamic -pthread -Wl,--export-dynamic 
-L/home4/vogelbacher_f/extlib-scratch3-felsim/boost-trunk/ 
-L/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/lib 
-L/home4/vogelbacher_f/svnwork/dune-trunk/dune-common/lib -L/usr/lib 
-lgmpxx -lgmp 
-L/home4/vogelbacher_f/extlib-scratch3-felsim/ALUGrid-1.22/lib 
-L/home4/vogelbacher_f/extlib-scratch3-felsim/metis-4.0 
-L/opt/mpi/openmpi-1.3.3-gcc-4.3.1/lib -lGL -L/usr/lib64 -lX11 
/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/lib/.libs/libdunegrid.a 
/home4/vogelbacher_f/extlib-scratch3-felsim/ALUGrid-1.22/lib/libalugrid.a 
-lmetis 
/home4/vogelbacher_f/svnwork/dune-trunk/dune-common/lib/.libs/libdunecommon.a 
/opt/mpi/openmpi-1.3.3-gcc-4.3.1/lib/libmpi_cxx.so 
/opt/gcc/gcc-4.3.1/lib/../lib64/libstdc++.so 
/opt/mpi/openmpi-1.3.3-gcc-4.3.1/lib/libmpi.so 
/opt/mpi/openmpi-1.3.3-gcc-4.3.1/lib/libopen-rte.so 
/opt/mpi/openmpi-1.3.3-gcc-4.3.1/lib/libopen-pal.so -lnsl -lutil -ldl -lm
if mpicxx -std=c++0x -DHAVE_CONFIG_H -I. -I. -I. 
-I/home4/vogelbacher_f/svnwork/dune-trunk/dune-common 
-I/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid 
-I/home4/vogelbacher_f/svnwork/dune-trunk/dune-istl -I. 
-DMPICH_IGNORE_CXX_SEEK -O2 
-I/home4/vogelbacher_f/extlib-scratch3-felsim/boost-trunk/include 
-I/opt/mpi/openmpi-1.3.3-gcc-4.3.1/include -pthread -DMPIPP_H 
-DENABLE_MPI=1 -DMPICH_IGNORE_CXX_SEEK -O2 
-I/home4/vogelbacher_f/extlib-scratch3-felsim/boost-trunk/include 
-I/home4/vogelbacher_f/svnwork/dune-trunk/dune-common 
-I/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid 
-I/home4/vogelbacher_f/svnwork/dune-trunk/dune-istl 
-I/opt/mpi/openmpi-1.3.3-gcc-4.3.1/include -pthread -DMPIPP_H 
-DENABLE_MPI=1 -I/home4/vogelbacher_f/svnwork/dune-trunk/dune-common 
-DGRIDDIM=2 -DWORLDDIM=2 -DYASPGRID 
-I/opt/mpi/openmpi-1.3.3-gcc-4.3.1/include -pthread -DMPIPP_H 
-DENABLE_MPI=1 
-I/home4/vogelbacher_f/extlib-scratch3-felsim/ALUGrid-1.22/include 
-I/home4/vogelbacher_f/extlib-scratch3-felsim/ALUGrid-1.22/include/serial 
-I/home4/vogelbacher_f/extlib-scratch3-felsim/ALUGrid-1.22/include/duneinterface 
-DENABLE_ALUGRID 
-I/home4/vogelbacher_f/extlib-scratch3-felsim/ALUGrid-1.22/include/parallel 
-I/usr/include -DENABLE_GMP=1 
-I/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid 
-I/home4/vogelbacher_f/svnwork/dune-trunk/dune-istl 
-DMPICH_IGNORE_CXX_SEEK -O2 -MT traversal-traversal.o -MD -MP -MF 
".deps/traversal-traversal.Tpo" -c -o traversal-traversal.o `test -f 
'traversal.cc' || echo './'`traversal.cc; \
         then mv -f ".deps/traversal-traversal.Tpo" 
".deps/traversal-traversal.Po"; else rm -f 
".deps/traversal-traversal.Tpo"; exit 1; fi
/bin/sh ./libtool --tag=CXX --mode=link mpicxx -std=c++0x 
-DMPICH_IGNORE_CXX_SEEK -O2 
-L/home4/vogelbacher_f/extlib-scratch3-felsim/boost-trunk/ -o traversal 
  traversal-traversal.o 
-L/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/lib -ldunegrid 
-L/home4/vogelbacher_f/svnwork/dune-trunk/dune-common/lib -ldunecommon 
-L/home4/vogelbacher_f/extlib-scratch3-felsim/boost-trunk/ 
       -L/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/lib 
-ldunegrid -L/usr/lib -lgmpxx -lgmp 
-L/home4/vogelbacher_f/extlib-scratch3-felsim/ALUGrid-1.22/lib -lalugrid 
-pthread -L/opt/mpi/openmpi-1.3.3-gcc-4.3.1/lib -lmpi -lopen-rte 
-lopen-pal -ldl -Wl,--export-dynamic -lnsl -lutil -lm -ldl  -lGL 
-L/usr/lib64 -lX11  -lm 
-L/home4/vogelbacher_f/svnwork/dune-trunk/dune-common/lib -ldunecommon 
-pthread -L/opt/mpi/openmpi-1.3.3-gcc-4.3.1/lib -lmpi -lopen-rte 
-lopen-pal -ldl -Wl,--export-dynamic -lnsl -lutil -lm -ldl 
-L/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/lib -ldunegrid 
-L/home4/vogelbacher_f/svnwork/dune-trunk/dune-common/lib -ldunecommon 
-L/home4/vogelbacher_f/svnwork/dune-trunk/dune-common/lib -ldunecommon 
  -L/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/lib -ldunegrid 
-L/home4/vogelbacher_f/svnwork/dune-trunk/dune-common/lib -ldunecommon 
   -lm   -pthread -L/opt/mpi/openmpi-1.3.3-gcc-4.3.1/lib -lmpi 
-lopen-rte -lopen-pal -ldl -Wl,--export-dynamic -lnsl -lutil -lm -ldl -lm
mpicxx -std=c++0x -DMPICH_IGNORE_CXX_SEEK -O2 -o traversal 
traversal-traversal.o -pthread -Wl,--export-dynamic -pthread 
-Wl,--export-dynamic -pthread -Wl,--export-dynamic 
-L/home4/vogelbacher_f/extlib-scratch3-felsim/boost-trunk/ 
-L/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/lib 
-L/home4/vogelbacher_f/svnwork/dune-trunk/dune-common/lib -L/usr/lib 
-lgmpxx -lgmp 
-L/home4/vogelbacher_f/extlib-scratch3-felsim/ALUGrid-1.22/lib 
-L/home4/vogelbacher_f/extlib-scratch3-felsim/metis-4.0 
-L/opt/mpi/openmpi-1.3.3-gcc-4.3.1/lib -lGL -L/usr/lib64 -lX11 
/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/lib/.libs/libdunegrid.a 
/home4/vogelbacher_f/extlib-scratch3-felsim/ALUGrid-1.22/lib/libalugrid.a 
-lmetis 
/home4/vogelbacher_f/svnwork/dune-trunk/dune-common/lib/.libs/libdunecommon.a 
/opt/mpi/openmpi-1.3.3-gcc-4.3.1/lib/libmpi_cxx.so 
/opt/gcc/gcc-4.3.1/lib/../lib64/libstdc++.so 
/opt/mpi/openmpi-1.3.3-gcc-4.3.1/lib/libmpi.so 
/opt/mpi/openmpi-1.3.3-gcc-4.3.1/lib/libopen-rte.so 
/opt/mpi/openmpi-1.3.3-gcc-4.3.1/lib/libopen-pal.so -lnsl -lutil -ldl -lm
if mpicxx -std=c++0x -DHAVE_CONFIG_H -I. -I. -I. 
-I/home4/vogelbacher_f/svnwork/dune-trunk/dune-common 
-I/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid 
-I/home4/vogelbacher_f/svnwork/dune-trunk/dune-istl -I. 
-DMPICH_IGNORE_CXX_SEEK -O2 
-I/home4/vogelbacher_f/extlib-scratch3-felsim/boost-trunk/include 
-I/opt/mpi/openmpi-1.3.3-gcc-4.3.1/include -pthread -DMPIPP_H 
-DENABLE_MPI=1 -DMPICH_IGNORE_CXX_SEEK -O2 
-I/home4/vogelbacher_f/extlib-scratch3-felsim/boost-trunk/include 
-I/home4/vogelbacher_f/svnwork/dune-trunk/dune-common 
-I/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid 
-I/home4/vogelbacher_f/svnwork/dune-trunk/dune-istl 
-I/opt/mpi/openmpi-1.3.3-gcc-4.3.1/include -pthread -DMPIPP_H 
-DENABLE_MPI=1 -I/home4/vogelbacher_f/svnwork/dune-trunk/dune-common 
-DGRIDDIM=2 -DWORLDDIM=2 -DYASPGRID 
-I/opt/mpi/openmpi-1.3.3-gcc-4.3.1/include -pthread -DMPIPP_H 
-DENABLE_MPI=1 
-I/home4/vogelbacher_f/extlib-scratch3-felsim/ALUGrid-1.22/include 
-I/home4/vogelbacher_f/extlib-scratch3-felsim/ALUGrid-1.22/include/serial 
-I/home4/vogelbacher_f/extlib-scratch3-felsim/ALUGrid-1.22/include/duneinterface 
-DENABLE_ALUGRID 
-I/home4/vogelbacher_f/extlib-scratch3-felsim/ALUGrid-1.22/include/parallel 
-I/usr/include -DENABLE_GMP=1 
-I/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid 
-I/home4/vogelbacher_f/svnwork/dune-trunk/dune-istl 
-DMPICH_IGNORE_CXX_SEEK -O2 -MT integration-integration.o -MD -MP -MF 
".deps/integration-integration.Tpo" -c -o integration-integration.o 
`test -f 'integration.cc' || echo './'`integration.cc; \
         then mv -f ".deps/integration-integration.Tpo" 
".deps/integration-integration.Po"; else rm -f 
".deps/integration-integration.Tpo"; exit 1; fi
/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/dune/grid/io/file/dgfparser/dgfyasp.hh: 
In member function ‘int Dune::DGFGridFactory<Dune::YaspGrid<dim> 
 >::boundaryId(const Intersection&) const [with Intersection = 
Dune::Intersection<const Dune::YaspGrid<2>, Dune::YaspIntersection>, int 
dim = 2]’:
/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/dune/grid/io/file/dgfparser/dgfparser.hh:539: 
   instantiated from ‘void 
Dune::GridPtr<GridType>::initialize(Dune::DGFGridFactory<GridType>&) 
[with GridType = Dune::YaspGrid<2>]’
/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/dune/grid/io/file/dgfparser/dgfparser.hh:355: 
   instantiated from ‘Dune::GridPtr<GridType>::GridPtr(const 
std::string&, ompi_communicator_t*) [with GridType = Dune::YaspGrid<2>]’
integration.cc:73:   instantiated from here
/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/dune/grid/io/file/dgfparser/dgfyasp.hh:104: 
warning: ‘int Dune::Intersection<GridImp, IntersectionImp>::boundaryId() 
const [with GridImp = const Dune::YaspGrid<2>, IntersectionImp = 
Dune::YaspIntersection]’ is deprecated (declared at 
/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/dune/grid/common/intersection.hh:231)
/bin/sh ./libtool --tag=CXX --mode=link mpicxx -std=c++0x 
-DMPICH_IGNORE_CXX_SEEK -O2 
-L/home4/vogelbacher_f/extlib-scratch3-felsim/boost-trunk/ -o 
integration  integration-integration.o 
-L/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/lib -ldunegrid 
-L/home4/vogelbacher_f/svnwork/dune-trunk/dune-common/lib -ldunecommon 
-L/home4/vogelbacher_f/extlib-scratch3-felsim/boost-trunk/ 
       -L/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/lib 
-ldunegrid -L/usr/lib -lgmpxx -lgmp 
-L/home4/vogelbacher_f/extlib-scratch3-felsim/ALUGrid-1.22/lib -lalugrid 
-pthread -L/opt/mpi/openmpi-1.3.3-gcc-4.3.1/lib -lmpi -lopen-rte 
-lopen-pal -ldl -Wl,--export-dynamic -lnsl -lutil -lm -ldl  -lGL 
-L/usr/lib64 -lX11  -lm 
-L/home4/vogelbacher_f/svnwork/dune-trunk/dune-common/lib -ldunecommon 
-pthread -L/opt/mpi/openmpi-1.3.3-gcc-4.3.1/lib -lmpi -lopen-rte 
-lopen-pal -ldl -Wl,--export-dynamic -lnsl -lutil -lm -ldl 
-L/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/lib -ldunegrid 
-L/home4/vogelbacher_f/svnwork/dune-trunk/dune-common/lib -ldunecommon 
-L/home4/vogelbacher_f/svnwork/dune-trunk/dune-common/lib -ldunecommon 
  -L/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/lib -ldunegrid 
-L/home4/vogelbacher_f/svnwork/dune-trunk/dune-common/lib -ldunecommon 
   -lm   -pthread -L/opt/mpi/openmpi-1.3.3-gcc-4.3.1/lib -lmpi 
-lopen-rte -lopen-pal -ldl -Wl,--export-dynamic -lnsl -lutil -lm -ldl -lm
mpicxx -std=c++0x -DMPICH_IGNORE_CXX_SEEK -O2 -o integration 
integration-integration.o -pthread -Wl,--export-dynamic -pthread 
-Wl,--export-dynamic -pthread -Wl,--export-dynamic 
-L/home4/vogelbacher_f/extlib-scratch3-felsim/boost-trunk/ 
-L/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/lib 
-L/home4/vogelbacher_f/svnwork/dune-trunk/dune-common/lib -L/usr/lib 
-lgmpxx -lgmp 
-L/home4/vogelbacher_f/extlib-scratch3-felsim/ALUGrid-1.22/lib 
-L/home4/vogelbacher_f/extlib-scratch3-felsim/metis-4.0 
-L/opt/mpi/openmpi-1.3.3-gcc-4.3.1/lib -lGL -L/usr/lib64 -lX11 
/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/lib/.libs/libdunegrid.a 
/home4/vogelbacher_f/extlib-scratch3-felsim/ALUGrid-1.22/lib/libalugrid.a 
-lmetis 
/home4/vogelbacher_f/svnwork/dune-trunk/dune-common/lib/.libs/libdunecommon.a 
/opt/mpi/openmpi-1.3.3-gcc-4.3.1/lib/libmpi_cxx.so 
/opt/gcc/gcc-4.3.1/lib/../lib64/libstdc++.so 
/opt/mpi/openmpi-1.3.3-gcc-4.3.1/lib/libmpi.so 
/opt/mpi/openmpi-1.3.3-gcc-4.3.1/lib/libopen-rte.so 
/opt/mpi/openmpi-1.3.3-gcc-4.3.1/lib/libopen-pal.so -lnsl -lutil -ldl -lm
if mpicxx -std=c++0x -DHAVE_CONFIG_H -I. -I. -I. 
-I/home4/vogelbacher_f/svnwork/dune-trunk/dune-common 
-I/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid 
-I/home4/vogelbacher_f/svnwork/dune-trunk/dune-istl -I. 
-DMPICH_IGNORE_CXX_SEEK -O2 
-I/home4/vogelbacher_f/extlib-scratch3-felsim/boost-trunk/include 
-I/opt/mpi/openmpi-1.3.3-gcc-4.3.1/include -pthread -DMPIPP_H 
-DENABLE_MPI=1 -DMPICH_IGNORE_CXX_SEEK -O2 
-I/home4/vogelbacher_f/extlib-scratch3-felsim/boost-trunk/include 
-I/home4/vogelbacher_f/svnwork/dune-trunk/dune-common 
-I/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid 
-I/home4/vogelbacher_f/svnwork/dune-trunk/dune-istl 
-I/opt/mpi/openmpi-1.3.3-gcc-4.3.1/include -pthread -DMPIPP_H 
-DENABLE_MPI=1 -I/home4/vogelbacher_f/svnwork/dune-trunk/dune-common 
-DGRIDDIM=2 -DWORLDDIM=2 -DYASPGRID 
-I/opt/mpi/openmpi-1.3.3-gcc-4.3.1/include -pthread -DMPIPP_H 
-DENABLE_MPI=1 
-I/home4/vogelbacher_f/extlib-scratch3-felsim/ALUGrid-1.22/include 
-I/home4/vogelbacher_f/extlib-scratch3-felsim/ALUGrid-1.22/include/serial 
-I/home4/vogelbacher_f/extlib-scratch3-felsim/ALUGrid-1.22/include/duneinterface 
-DENABLE_ALUGRID 
-I/home4/vogelbacher_f/extlib-scratch3-felsim/ALUGrid-1.22/include/parallel 
-I/usr/include -DENABLE_GMP=1 
-I/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid 
-I/home4/vogelbacher_f/svnwork/dune-trunk/dune-istl 
-DMPICH_IGNORE_CXX_SEEK -O2 -MT othergrids-othergrids.o -MD -MP -MF 
".deps/othergrids-othergrids.Tpo" -c -o othergrids-othergrids.o `test -f 
'othergrids.cc' || echo './'`othergrids.cc; \
         then mv -f ".deps/othergrids-othergrids.Tpo" 
".deps/othergrids-othergrids.Po"; else rm -f 
".deps/othergrids-othergrids.Tpo"; exit 1; fi
/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/dune/grid/utility/structuredgridfactory.hh: 
In constructor 
‘Dune::StructuredGridFactory<GridType>::MultiIndex::MultiIndex(const 
std::array<unsigned int, Dune::StructuredGridFactory<GridType>::dim>&) 
[with GridType = Dune::ALUCubeGrid<3, 3>]’:
/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/dune/grid/utility/structuredgridfactory.hh:149: 
   instantiated from ‘static std::shared_ptr<_Tp> 
Dune::StructuredGridFactory<GridType>::createCubeGrid(const 
Dune::FieldVector<typename GridType::ctype, 
Dune::StructuredGridFactory<GridType>::dimworld>&, const 
Dune::FieldVector<typename GridType::ctype, 
Dune::StructuredGridFactory<GridType>::dimworld>&, const 
std::array<unsigned int, Dune::StructuredGridFactory<GridType>::dim>&) 
[with GridType = Dune::ALUCubeGrid<3, 3>]’
unitcube_alugrid.hh:55:   instantiated from here
/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/dune/grid/utility/structuredgridfactory.hh:40: 
error: ‘class Dune::StructuredGridFactory<Dune::ALUCubeGrid<3, 3> 
 >::MultiIndex’ has no member named ‘fill’
/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/dune/grid/utility/structuredgridfactory.hh: 
In constructor 
‘Dune::StructuredGridFactory<GridType>::MultiIndex::MultiIndex(const 
std::array<unsigned int, Dune::StructuredGridFactory<GridType>::dim>&) 
[with GridType = Dune::OneDGrid]’:
/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/dune/grid/utility/structuredgridfactory.hh:149: 
   instantiated from ‘static std::shared_ptr<_Tp> 
Dune::StructuredGridFactory<GridType>::createCubeGrid(const 
Dune::FieldVector<typename GridType::ctype, 
Dune::StructuredGridFactory<GridType>::dimworld>&, const 
Dune::FieldVector<typename GridType::ctype, 
Dune::StructuredGridFactory<GridType>::dimworld>&, const 
std::array<unsigned int, Dune::StructuredGridFactory<GridType>::dim>&) 
[with GridType = Dune::OneDGrid]’
unitcube.hh:27:   instantiated from ‘UnitCube<T, variant>::UnitCube() 
[with T = Dune::OneDGrid, int variant = 1]’
othergrids.cc:20:   instantiated from here
/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/dune/grid/utility/structuredgridfactory.hh:40: 
error: ‘class Dune::StructuredGridFactory<Dune::OneDGrid>::MultiIndex’ 
has no member named ‘fill’
make[2]: *** [othergrids-othergrids.o] Error 1
make[2]: Leaving directory 
`/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid-howto'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory 
`/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid-howto'
make: *** [all] Error 2
--- Failed to build dune-grid-howto ---
Terminating dunecontrol due to previous errors!


-- 
---------------------------
Paul Scherrer Institut
Florian Vogelbacher
WBCA/004
5232 Villigen PSI
Switzerland

Mail: 	Florian.Vogelbacher at psi.ch
Phone:	+41 (0) 563105019
Web:	www.psi.ch
---------------------------



More information about the Dune mailing list