[Dune] Dune-grid-howto build problem
Oliver Sander
sander at mi.fu-berlin.de
Fri Sep 3 10:47:49 CEST 2010
fixed.
O
Am 2010-09-03 10:40, schrieb Vogelbacher Florian:
> Dear Dune,
>
> Setting up a new dune installation I got problems in compiling the
> dune-grid-howto. I'm not totaly sure if it is related to dune or to
> ALUGrid, but maybe you can see more in the logs.
>
> Thanks a lot in advance!
> Florian
>
> 1.) dune-common version
> URL: https://svn.dune-project.org/svn/dune-common/trunk
> Repository Root: https://svn.dune-project.org/svn/dune-common
> Repository UUID: 419231ca-4411-0410-aba2-fc6cf8c4f609
> Revision: 6119
> Node Kind: directory
> Schedule: normal
> Last Changed Author: sander
> Last Changed Rev: 6119
> Last Changed Date: 2010-09-02 08:47:05 +0200 (Thu, 02 Sep 2010)
>
> 2.) dune-grid version
> URL: https://svn.dune-project.org/svn/dune-grid/trunk
> Repository Root: https://svn.dune-project.org/svn/dune-grid
> Repository UUID: f82f27de-4411-0410-b156-930a902cda50
> Revision: 6928
> Node Kind: directory
> Schedule: normal
> Last Changed Author: christi
> Last Changed Rev: 6928
> Last Changed Date: 2010-09-01 22:25:03 +0200 (Wed, 01 Sep 2010)
>
> 4.) dune-istl version
> URL: https://svn.dune-project.org/svn/dune-istl/trunk
> Repository Root: https://svn.dune-project.org/svn/dune-istl
> Repository UUID: 8c7282f0-4411-0410-8e4f-cdd3e049afb8
> Revision: 1286
> Node Kind: directory
> Schedule: normal
> Last Changed Author: christi
> Last Changed Rev: 1286
> Last Changed Date: 2010-09-01 22:33:34 +0200 (Wed, 01 Sep 2010)
>
> 5.) dune-localfunction
> URL: https://svn.dune-project.org/svn/dune-localfunctions/trunk
> Repository Root: https://svn.dune-project.org/svn/dune-localfunctions
> Repository UUID: 99935a23-074d-4cae-87b7-4e54ca08e5e1
> Revision: 885
> Node Kind: directory
> Schedule: normal
> Last Changed Author: sander
> Last Changed Rev: 884
> Last Changed Date: 2010-06-22 20:46:31 +0200 (Tue, 22 Jun 2010)
> Now run ./configure to setup dune-grid-howto
>
> 6.) gcc and system
> $ gcc --version
> gcc (GCC) 4.3.1
> $ uname -a
> Linux felsim01 2.6.18-194.8.1.el5 #1 SMP Thu Jul 1 16:05:53 EDT 2010
> x86_64 x86_64 x86_64 GNU/Linux
>
> 7.) finally my problem :-)
> --- calling configure for dune-grid-howto ---
> ----- using default flags $CONFIGURE_FLAGS from
> /home4/vogelbacher_f/svnwork/dune-trunk/dune.felsim.opts -----
> ./configure CXX='mpicxx' CC='mpicc' LD='mpicxx'
> CXXFLAGS='-DMPICH_IGNORE_CXX_SEEK -O2'
> CPPFLAGS='-DMPICH_IGNORE_CXX_SEEK -O2' LDFLAGS=' '
> --disable-documentation --enable-parallel --enable-debug-output
> --enable-experimental-hades3delectrostatic
> --with-boost='/home4/vogelbacher_f/extlib-scratch3-felsim/boost-trunk'
> --with-metis='/home4/vogelbacher_f/extlib-scratch3-felsim/metis-4.0'
> --with-rlog='/home4/vogelbacher_f/extlib-scratch3-felsim/rlog-1.4'
> --with-alugrid='/home4/vogelbacher_f/extlib-scratch3-felsim/ALUGrid-1.22'
> "--with-dune-common=/home4/vogelbacher_f/svnwork/dune-trunk/dune-common/"
> "--with-dune-grid=/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/"
> "--with-dune-istl=/home4/vogelbacher_f/svnwork/dune-trunk/dune-istl/"
> ACLOCAL_AMFLAGS="-I . -I
> /home4/vogelbacher_f/svnwork/dune-trunk/dune-common/m4 -I
> /home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/m4 -I
> /home4/vogelbacher_f/svnwork/dune-trunk/dune-istl/m4"
> checking for a BSD-compatible install... /usr/bin/install -c
> checking whether build environment is sane... yes
> checking for gawk... gawk
> checking whether make sets $(MAKE)... yes
> checking how to create a pax tar archive... gnutar
> checking how to create a pax tar archive... (cached) gnutar
> checking for latex... latex
> checking for bibtex... bibtex
> checking for dvipdf... dvipdf
> checking for dvips... dvips
> checking for wml... no
> checking for tex4ht... no
> checking for mk4ht... no
> checking for t4ht... no
> checking for convert... convert
> checking for inkscape... no
> checking for doxygen... doxygen
> checking for latex... (cached) latex
> checking for bibtex... (cached) bibtex
> checking for dvipdf... (cached) dvipdf
> checking for dvips... (cached) dvips
> checking for wml... true
> checking for dot... dot
> checking for perl... perl
> checking for convert... (cached) convert
> checking for pkg-config... /usr/bin/pkg-config
> checking pkg-config is at least version 0.9.0... yes
> checking for style of include used by make... GNU
> checking for gcc... mpicc
> checking for C compiler default output file name... a.out
> checking whether the C compiler works... yes
> checking whether we are cross compiling... no
> checking for suffix of executables...
> checking for suffix of object files... o
> checking whether we are using the GNU C compiler... yes
> checking whether mpicc accepts -g... yes
> checking for mpicc option to accept ANSI C... none needed
> checking dependency style of mpicc... gcc3
> checking dependency style of mpicc... (cached) gcc3
> checking how to run the C preprocessor... mpicc -E
> checking whether we are using the GNU C++ compiler... yes
> checking whether mpicxx accepts -g... yes
> checking dependency style of mpicxx... gcc3
> checking dependency style of mpicxx... (cached) gcc3
> checking how to run the C++ preprocessor... mpicxx -E
> checking for g77... g77
> checking whether we are using the GNU Fortran 77 compiler... yes
> checking whether g77 accepts -g... yes
> checking build system type... x86_64-redhat-linux-gnu
> checking host system type... x86_64-redhat-linux-gnu
> checking for a sed that does not truncate output... /bin/sed
> checking for egrep... grep -E
> checking for ld used by mpicc... mpicxx
> checking if the linker (mpicxx) is GNU ld... no
> checking for mpicxx option to reload object files... -r
> checking for BSD-compatible nm... /usr/bin/nm -B
> checking whether ln -s works... yes
> checking how to recognise dependent libraries... pass_all
> checking for ANSI C header files... yes
> checking for sys/types.h... yes
> checking for sys/stat.h... yes
> checking for stdlib.h... yes
> checking for string.h... yes
> checking for memory.h... yes
> checking for strings.h... yes
> checking for inttypes.h... yes
> checking for stdint.h... yes
> checking for unistd.h... yes
> checking dlfcn.h usability... yes
> checking dlfcn.h presence... yes
> checking for dlfcn.h... yes
> checking how to run the C++ preprocessor... mpicxx -E
> checking the maximum length of command line arguments... 32768
> checking command to parse /usr/bin/nm -B output from mpicc object... ok
> checking for objdir... .libs
> checking for ar... ar
> checking for ranlib... ranlib
> checking for strip... strip
> checking if mpicc supports -fno-rtti -fno-exceptions... no
> checking for mpicc option to produce PIC... -fPIC
> checking if mpicc PIC flag -fPIC works... yes
> checking if mpicc static flag -static works... no
> checking if mpicc supports -c -o file.o... yes
> checking whether the mpicc linker (mpicxx -m elf_x86_64) supports
> shared libraries... no
> checking dynamic linker characteristics... GNU/Linux ld.so
> checking how to hardcode library paths into programs... unsupported
> checking whether stripping libraries is possible... yes
> checking if libtool supports shared libraries... no
> checking whether to build shared libraries... no
> checking whether to build static libraries... yes
> configure: creating libtool
> appending configuration tag "CXX" to libtool
> checking for ld used by mpicxx... mpicxx -m elf_x86_64
> checking if the linker (mpicxx -m elf_x86_64) is GNU ld... no
> checking whether the mpicxx linker (mpicxx -m elf_x86_64) supports
> shared libraries... yes
> checking for mpicxx option to produce PIC... -fPIC
> checking if mpicxx PIC flag -fPIC works... yes
> checking if mpicxx static flag -static works... no
> checking if mpicxx supports -c -o file.o... yes
> checking whether the mpicxx linker (mpicxx -m elf_x86_64) supports
> shared libraries... yes
> checking dynamic linker characteristics... GNU/Linux ld.so
> checking how to hardcode library paths into programs... unsupported
> appending configuration tag "F77" to libtool
> checking if libtool supports shared libraries... no
> checking whether to build shared libraries... no
> checking whether to build static libraries... yes
> checking for g77 option to produce PIC... -fPIC
> checking if g77 PIC flag -fPIC works... yes
> checking if g77 static flag -static works... yes
> checking if g77 supports -c -o file.o... yes
> checking whether the g77 linker (mpicxx -m elf_x86_64) supports shared
> libraries... no
> checking dynamic linker characteristics... GNU/Linux ld.so
> checking how to hardcode library paths into programs... unsupported
> checking for ranlib... (cached) ranlib
> checking whether compiler is officially supported by DUNE... yes
> checking whether g++ accepts -std=c++0x... yes
> checking whether static_assert is supported... yes
> checking whether nullptr is supported... no
> checking type_traits usability... yes
> checking type_traits presence... yes
> checking for type_traits... yes
> checking tr1/type_traits usability... yes
> checking tr1/type_traits presence... yes
> checking for tr1/type_traits... yes
> checking array usability... yes
> checking array presence... yes
> checking for array... yes
> checking tr1/array usability... yes
> checking tr1/array presence... yes
> checking for tr1/array... yes
> checking tuple usability... yes
> checking tuple presence... yes
> checking for tuple... yes
> checking tr1/tuple usability... yes
> checking tr1/tuple presence... yes
> checking for tr1/tuple... yes
> checking memory usability... yes
> checking memory presence... yes
> checking for memory... yes
> checking tr1/memory usability... yes
> checking tr1/memory presence... yes
> checking for tr1/memory... yes
> checking boost/shared_ptr.hpp usability... yes
> checking boost/shared_ptr.hpp presence... yes
> checking for boost/shared_ptr.hpp... yes
> checking the location of shared_ptr header file...
> checking whether compiling C++ code works... yes
> checking whether linking C++ objects works... yes
> checking for __attribute__((deprecated))... yes
> checking rpc/rpc.h usability... yes
> checking rpc/rpc.h presence... yes
> checking for rpc/rpc.h... yes
> checking for mpicc... mpicc
> checking for MPI_Init... yes
> checking for mpi.h... yes
> configure: Trying to identify the version of MPI compiler mpicc
> checking for lam... no
> checking for mpich... no
> checking for OpenMPI... yes
> checking whether compiling with OpenMPI works... yes
> configure: WARNING: Disabled test whether running with OpenMPI works.
> checking for MPI_Finalized in -lm... yes
> checking for an ANSI C-conforming const... yes
> checking for inline... inline
> checking for size_t... yes
> checking whether struct tm is in sys/time.h or time.h... time.h
> checking for stdlib.h... (cached) yes
> checking for GNU libc compatible malloc... yes
> checking malloc.h usability... yes
> checking malloc.h presence... yes
> checking for malloc.h... yes
> checking for string.h... (cached) yes
> checking for pow in -lm... yes
> checking for sqrt... yes
> checking for strchr... yes
> checking for dune-common installation or source tree... found in
> /home4/vogelbacher_f/svnwork/dune-trunk/dune-common
> checking dune/common/stdstreams.hh usability... yes
> checking dune/common/stdstreams.hh presence... yes
> checking for dune/common/stdstreams.hh... yes
> checking for libdunecommon... yes
> checking for X... libraries /usr/lib64, headers
> checking for gethostbyname... yes
> checking for connect... yes
> checking for remove... yes
> checking for shmat... yes
> checking for IceConnectionNumber in -lICE... yes
> checking for the pthreads library -lpthreads... no
> checking whether pthreads work without any flags... yes
> checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE
> checking if more special flags are required for pthreads... no
> checking for cc_r... mpicc
> checking whether we are using the Microsoft C compiler... no
> checking windows.h usability... no
> checking windows.h presence... no
> checking for windows.h... no
> checking for OpenGL library... -lGL
> checking grape.h usability... no
> checking grape.h presence... no
> checking for grape.h... no
> configure: searching for ALBERTA in /usr...
> configure: searching for ALBERTA in /usr/local...
> configure: searching for ALBERTA in /usr/local/alberta...
> configure: searching for ALBERTA in /opt/alberta...
> checking alberta.h usability... no
> checking alberta.h presence... no
> checking for alberta.h... no
> configure: WARNING: alberta.h not found in -I/include/alberta
> checking /usr/local/ug/include//gm.h usability... no
> checking /usr/local/ug/include//gm.h presence... no
> checking for /usr/local/ug/include//gm.h... no
> configure: WARNING: gm.h not found in /usr/local/ug/include/
> checking for amiramesh/AmiraMesh.h... no
> configure: WARNING: AmiraMesh.h not found in
> /usr/local/amiramesh/include/amiramesh
> checking psurface.h usability... no
> checking psurface.h presence... no
> checking for psurface.h... no
> checking ALUGrid version >= 1.22... yes (ALUGrid-1.22)
> checking alugrid_serial.h usability... yes
> checking alugrid_serial.h presence... yes
> checking for alugrid_serial.h... yes
> checking alugrid_parallel.h usability... yes
> checking alugrid_parallel.h presence... yes
> checking for alugrid_parallel.h... yes
> checking for malloc in -lalugrid... yes
> configure: searching for GMP in /usr...
> checking gmpxx.h usability... yes
> checking gmpxx.h presence... yes
> checking for gmpxx.h... yes
> checking for __gmpz_abs in -L/usr/lib -lgmp... yes
> checking for alglib4dune (>=1.0) via pkgconfig... no
> checking for dune-grid installation or source tree... found in
> /home4/vogelbacher_f/svnwork/dune-trunk/dune-grid
> checking dune/grid/onedgrid.hh usability... yes
> checking dune/grid/onedgrid.hh presence... yes
> checking for dune/grid/onedgrid.hh... yes
> checking for libdunegrid... yes
> checking for ParMETIS library... failed
> checking how to get verbose linking output from g77... -v
> checking for Fortran libraries of g77...
> -L/usr/lib/gcc/x86_64-redhat-linux/3.4.6
> -L/usr/lib/gcc/x86_64-redhat-linux/3.4.6/../../../../lib64
> -L/usr/lib/gcc/x86_64-redhat-linux/3.4.6/../../.. -L/lib/../lib64
> -L/usr/lib/../lib64 -lfrtbegin -lg2c -lm -lgcc_s
> checking for dummy main to link with Fortran libraries... none
> checking for Fortran name-mangling scheme... lower case, underscore,
> extra underscore
> checking for sgemm_... no
> checking for ATL_xerbla in -latlas... no
> checking for sgemm_ in -lblas... yes
> checking for dgemm_ in -ldgemm... no
> checking for sgemm_ in -lcxml... no
> checking for sgemm_ in -ldxml... no
> checking for sgemm_ in -lscs... no
> checking for sgemm_ in -lcomplib.sgimath... no
> checking for sgemm_ in -lblas... (cached) yes
> checking for sgemm_ in -lessl... no
> checking for sgemm_ in -lblas... (cached) yes
> checking dsp_defs.h usability... no
> checking dsp_defs.h presence... no
> checking for dsp_defs.h... no
> configure: WARNING: dsp_defs.h not found in /usr/local/SRC with
> -DMPICH_IGNORE_CXX_SEEK -O2 -I/usr/local/SRC -DENABLE_SUPERLU
> checking SuperLU... no
> checking for SuperLUDist library... checking superlu_ddefs.h
> usability... no
> checking superlu_ddefs.h presence... no
> checking for superlu_ddefs.h... no
> configure: WARNING: superlu_ddefs.h not found in /usr/local/SRC with
> -DMPICH_IGNORE_CXX_SEEK -O2 -I/usr/local/SRC
> -I/opt/mpi/openmpi-1.3.3-gcc-4.3.1/include -pthread -DMPIPP_H
> -DENABLE_MPI=1
> checking SuperLUDist in /usr/local... failed
> checking for cheev_... no
> checking for cheev_ in -llapack... yes
> checking for METIS library... yes
> checking for METIS_PartMeshDual in -lmetis... yes
> checking for metis.h... yes
> xyes
> checking METIS in
> /home4/vogelbacher_f/extlib-scratch3-felsim/metis-4.0... ok
> checking for boostlib >= 1.20.0... yes
> checking whether the Boost::FUSION library is available... yes
> checking for dune-istl installation or source tree... found in
> /home4/vogelbacher_f/svnwork/dune-trunk/dune-istl
> checking dune/istl/istlexception.hh usability... yes
> checking dune/istl/istlexception.hh presence... yes
> checking for dune/istl/istlexception.hh... yes
> configure: dune-istl does not provide libs
> configure: creating ./config.status
> config.status: creating Makefile
> config.status: creating doc/Makefile
> config.status: creating doc/config.tex
> config.status: creating grids/Makefile
> config.status: creating dune-grid-howto.pc
> config.status: creating config.h
> config.status: executing depfiles commands
>
> Found the following Dune-components:
>
> ----------------------------------------
>
> dune-common.............: version 2.1-svn
> dune-grid...............: version 2.1-svn
> dune-istl...............: version 2.1-svn
> ALBERTA.................: no
> ALUGrid.................: version 1.22
> AlgLib for DUNE.........: no
> AmiraMesh...............: no
> BLAS....................: yes
> GMP.....................: yes
> Grape...................: no
> METIS...................: yes
> MPI.....................: yes (OpenMPI)
> OpenGL..................: yes
> ParMETIS................: no
> SuperLU-DIST............: no
> SuperLU.................: no
> UG......................: no
> psurface................: no
>
> ----------------------------------------
>
> See ./configure --help and config.log for reasons why a component
> wasn't found
>
> --- calling make for dune-grid-howto ---
> make
> make all-recursive
> make[1]: Entering directory
> `/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid-howto'
> Making all in doc
> make[2]: Entering directory
> `/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid-howto/doc'
> make[2]: Nothing to be done for `all'.
> make[2]: Leaving directory
> `/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid-howto/doc'
> Making all in grids
> make[2]: Entering directory
> `/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid-howto/grids'
> make[2]: Nothing to be done for `all'.
> make[2]: Leaving directory
> `/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid-howto/grids'
> make[2]: Entering directory
> `/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid-howto'
> if mpicxx -std=c++0x -DHAVE_CONFIG_H -I. -I. -I.
> -I/home4/vogelbacher_f/svnwork/dune-trunk/dune-common
> -I/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid
> -I/home4/vogelbacher_f/svnwork/dune-trunk/dune-istl -I.
> -DMPICH_IGNORE_CXX_SEEK -O2
> -I/home4/vogelbacher_f/extlib-scratch3-felsim/boost-trunk/include
> -I/opt/mpi/openmpi-1.3.3-gcc-4.3.1/include -pthread -DMPIPP_H
> -DENABLE_MPI=1 -DMPICH_IGNORE_CXX_SEEK -O2
> -I/home4/vogelbacher_f/extlib-scratch3-felsim/boost-trunk/include
> -I/home4/vogelbacher_f/svnwork/dune-trunk/dune-common
> -I/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid
> -I/home4/vogelbacher_f/svnwork/dune-trunk/dune-istl
> -I/opt/mpi/openmpi-1.3.3-gcc-4.3.1/include -pthread -DMPIPP_H
> -DENABLE_MPI=1 -I/home4/vogelbacher_f/svnwork/dune-trunk/dune-common
> -DGRIDDIM=2 -DWORLDDIM=2 -DYASPGRID
> -I/opt/mpi/openmpi-1.3.3-gcc-4.3.1/include -pthread -DMPIPP_H
> -DENABLE_MPI=1
> -I/home4/vogelbacher_f/extlib-scratch3-felsim/ALUGrid-1.22/include
> -I/home4/vogelbacher_f/extlib-scratch3-felsim/ALUGrid-1.22/include/serial
> -I/home4/vogelbacher_f/extlib-scratch3-felsim/ALUGrid-1.22/include/duneinterface
> -DENABLE_ALUGRID
> -I/home4/vogelbacher_f/extlib-scratch3-felsim/ALUGrid-1.22/include/parallel
> -I/usr/include -DENABLE_GMP=1
> -I/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid
> -I/home4/vogelbacher_f/svnwork/dune-trunk/dune-istl
> -DMPICH_IGNORE_CXX_SEEK -O2 -MT gettingstarted-gettingstarted.o -MD
> -MP -MF ".deps/gettingstarted-gettingstarted.Tpo" -c -o
> gettingstarted-gettingstarted.o `test -f 'gettingstarted.cc' || echo
> './'`gettingstarted.cc; \
> then mv -f ".deps/gettingstarted-gettingstarted.Tpo"
> ".deps/gettingstarted-gettingstarted.Po"; else rm -f
> ".deps/gettingstarted-gettingstarted.Tpo"; exit 1; fi
> /bin/sh ./libtool --tag=CXX --mode=link mpicxx -std=c++0x
> -DMPICH_IGNORE_CXX_SEEK -O2
> -L/home4/vogelbacher_f/extlib-scratch3-felsim/boost-trunk/ -o
> gettingstarted gettingstarted-gettingstarted.o
> -L/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/lib -ldunegrid
> -L/home4/vogelbacher_f/svnwork/dune-trunk/dune-common/lib -ldunecommon
> -L/home4/vogelbacher_f/extlib-scratch3-felsim/boost-trunk/
> -L/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/lib -ldunegrid
> -L/usr/lib -lgmpxx -lgmp
> -L/home4/vogelbacher_f/extlib-scratch3-felsim/ALUGrid-1.22/lib
> -lalugrid -pthread -L/opt/mpi/openmpi-1.3.3-gcc-4.3.1/lib -lmpi
> -lopen-rte -lopen-pal -ldl -Wl,--export-dynamic -lnsl -lutil -lm -ldl
> -lGL -L/usr/lib64 -lX11 -lm
> -L/home4/vogelbacher_f/svnwork/dune-trunk/dune-common/lib -ldunecommon
> -pthread -L/opt/mpi/openmpi-1.3.3-gcc-4.3.1/lib -lmpi -lopen-rte
> -lopen-pal -ldl -Wl,--export-dynamic -lnsl -lutil -lm -ldl
> -L/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/lib -ldunegrid
> -L/home4/vogelbacher_f/svnwork/dune-trunk/dune-common/lib -ldunecommon
> -L/home4/vogelbacher_f/svnwork/dune-trunk/dune-common/lib -ldunecommon
> -L/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/lib -ldunegrid
> -L/home4/vogelbacher_f/svnwork/dune-trunk/dune-common/lib -ldunecommon
> -lm -pthread -L/opt/mpi/openmpi-1.3.3-gcc-4.3.1/lib -lmpi
> -lopen-rte -lopen-pal -ldl -Wl,--export-dynamic -lnsl -lutil -lm -ldl -lm
> mpicxx -std=c++0x -DMPICH_IGNORE_CXX_SEEK -O2 -o gettingstarted
> gettingstarted-gettingstarted.o -pthread -Wl,--export-dynamic -pthread
> -Wl,--export-dynamic -pthread -Wl,--export-dynamic
> -L/home4/vogelbacher_f/extlib-scratch3-felsim/boost-trunk/
> -L/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/lib
> -L/home4/vogelbacher_f/svnwork/dune-trunk/dune-common/lib -L/usr/lib
> -lgmpxx -lgmp
> -L/home4/vogelbacher_f/extlib-scratch3-felsim/ALUGrid-1.22/lib
> -L/home4/vogelbacher_f/extlib-scratch3-felsim/metis-4.0
> -L/opt/mpi/openmpi-1.3.3-gcc-4.3.1/lib -lGL -L/usr/lib64 -lX11
> /home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/lib/.libs/libdunegrid.a
> /home4/vogelbacher_f/extlib-scratch3-felsim/ALUGrid-1.22/lib/libalugrid.a
> -lmetis
> /home4/vogelbacher_f/svnwork/dune-trunk/dune-common/lib/.libs/libdunecommon.a
> /opt/mpi/openmpi-1.3.3-gcc-4.3.1/lib/libmpi_cxx.so
> /opt/gcc/gcc-4.3.1/lib/../lib64/libstdc++.so
> /opt/mpi/openmpi-1.3.3-gcc-4.3.1/lib/libmpi.so
> /opt/mpi/openmpi-1.3.3-gcc-4.3.1/lib/libopen-rte.so
> /opt/mpi/openmpi-1.3.3-gcc-4.3.1/lib/libopen-pal.so -lnsl -lutil -ldl -lm
> if mpicxx -std=c++0x -DHAVE_CONFIG_H -I. -I. -I.
> -I/home4/vogelbacher_f/svnwork/dune-trunk/dune-common
> -I/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid
> -I/home4/vogelbacher_f/svnwork/dune-trunk/dune-istl -I.
> -DMPICH_IGNORE_CXX_SEEK -O2
> -I/home4/vogelbacher_f/extlib-scratch3-felsim/boost-trunk/include
> -I/opt/mpi/openmpi-1.3.3-gcc-4.3.1/include -pthread -DMPIPP_H
> -DENABLE_MPI=1 -DMPICH_IGNORE_CXX_SEEK -O2
> -I/home4/vogelbacher_f/extlib-scratch3-felsim/boost-trunk/include
> -I/home4/vogelbacher_f/svnwork/dune-trunk/dune-common
> -I/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid
> -I/home4/vogelbacher_f/svnwork/dune-trunk/dune-istl
> -I/opt/mpi/openmpi-1.3.3-gcc-4.3.1/include -pthread -DMPIPP_H
> -DENABLE_MPI=1 -I/home4/vogelbacher_f/svnwork/dune-trunk/dune-common
> -DGRIDDIM=2 -DWORLDDIM=2 -DYASPGRID
> -I/opt/mpi/openmpi-1.3.3-gcc-4.3.1/include -pthread -DMPIPP_H
> -DENABLE_MPI=1
> -I/home4/vogelbacher_f/extlib-scratch3-felsim/ALUGrid-1.22/include
> -I/home4/vogelbacher_f/extlib-scratch3-felsim/ALUGrid-1.22/include/serial
> -I/home4/vogelbacher_f/extlib-scratch3-felsim/ALUGrid-1.22/include/duneinterface
> -DENABLE_ALUGRID
> -I/home4/vogelbacher_f/extlib-scratch3-felsim/ALUGrid-1.22/include/parallel
> -I/usr/include -DENABLE_GMP=1
> -I/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid
> -I/home4/vogelbacher_f/svnwork/dune-trunk/dune-istl
> -DMPICH_IGNORE_CXX_SEEK -O2 -MT traversal-traversal.o -MD -MP -MF
> ".deps/traversal-traversal.Tpo" -c -o traversal-traversal.o `test -f
> 'traversal.cc' || echo './'`traversal.cc; \
> then mv -f ".deps/traversal-traversal.Tpo"
> ".deps/traversal-traversal.Po"; else rm -f
> ".deps/traversal-traversal.Tpo"; exit 1; fi
> /bin/sh ./libtool --tag=CXX --mode=link mpicxx -std=c++0x
> -DMPICH_IGNORE_CXX_SEEK -O2
> -L/home4/vogelbacher_f/extlib-scratch3-felsim/boost-trunk/ -o
> traversal traversal-traversal.o
> -L/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/lib -ldunegrid
> -L/home4/vogelbacher_f/svnwork/dune-trunk/dune-common/lib -ldunecommon
> -L/home4/vogelbacher_f/extlib-scratch3-felsim/boost-trunk/
> -L/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/lib -ldunegrid
> -L/usr/lib -lgmpxx -lgmp
> -L/home4/vogelbacher_f/extlib-scratch3-felsim/ALUGrid-1.22/lib
> -lalugrid -pthread -L/opt/mpi/openmpi-1.3.3-gcc-4.3.1/lib -lmpi
> -lopen-rte -lopen-pal -ldl -Wl,--export-dynamic -lnsl -lutil -lm -ldl
> -lGL -L/usr/lib64 -lX11 -lm
> -L/home4/vogelbacher_f/svnwork/dune-trunk/dune-common/lib -ldunecommon
> -pthread -L/opt/mpi/openmpi-1.3.3-gcc-4.3.1/lib -lmpi -lopen-rte
> -lopen-pal -ldl -Wl,--export-dynamic -lnsl -lutil -lm -ldl
> -L/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/lib -ldunegrid
> -L/home4/vogelbacher_f/svnwork/dune-trunk/dune-common/lib -ldunecommon
> -L/home4/vogelbacher_f/svnwork/dune-trunk/dune-common/lib -ldunecommon
> -L/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/lib -ldunegrid
> -L/home4/vogelbacher_f/svnwork/dune-trunk/dune-common/lib -ldunecommon
> -lm -pthread -L/opt/mpi/openmpi-1.3.3-gcc-4.3.1/lib -lmpi
> -lopen-rte -lopen-pal -ldl -Wl,--export-dynamic -lnsl -lutil -lm -ldl -lm
> mpicxx -std=c++0x -DMPICH_IGNORE_CXX_SEEK -O2 -o traversal
> traversal-traversal.o -pthread -Wl,--export-dynamic -pthread
> -Wl,--export-dynamic -pthread -Wl,--export-dynamic
> -L/home4/vogelbacher_f/extlib-scratch3-felsim/boost-trunk/
> -L/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/lib
> -L/home4/vogelbacher_f/svnwork/dune-trunk/dune-common/lib -L/usr/lib
> -lgmpxx -lgmp
> -L/home4/vogelbacher_f/extlib-scratch3-felsim/ALUGrid-1.22/lib
> -L/home4/vogelbacher_f/extlib-scratch3-felsim/metis-4.0
> -L/opt/mpi/openmpi-1.3.3-gcc-4.3.1/lib -lGL -L/usr/lib64 -lX11
> /home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/lib/.libs/libdunegrid.a
> /home4/vogelbacher_f/extlib-scratch3-felsim/ALUGrid-1.22/lib/libalugrid.a
> -lmetis
> /home4/vogelbacher_f/svnwork/dune-trunk/dune-common/lib/.libs/libdunecommon.a
> /opt/mpi/openmpi-1.3.3-gcc-4.3.1/lib/libmpi_cxx.so
> /opt/gcc/gcc-4.3.1/lib/../lib64/libstdc++.so
> /opt/mpi/openmpi-1.3.3-gcc-4.3.1/lib/libmpi.so
> /opt/mpi/openmpi-1.3.3-gcc-4.3.1/lib/libopen-rte.so
> /opt/mpi/openmpi-1.3.3-gcc-4.3.1/lib/libopen-pal.so -lnsl -lutil -ldl -lm
> if mpicxx -std=c++0x -DHAVE_CONFIG_H -I. -I. -I.
> -I/home4/vogelbacher_f/svnwork/dune-trunk/dune-common
> -I/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid
> -I/home4/vogelbacher_f/svnwork/dune-trunk/dune-istl -I.
> -DMPICH_IGNORE_CXX_SEEK -O2
> -I/home4/vogelbacher_f/extlib-scratch3-felsim/boost-trunk/include
> -I/opt/mpi/openmpi-1.3.3-gcc-4.3.1/include -pthread -DMPIPP_H
> -DENABLE_MPI=1 -DMPICH_IGNORE_CXX_SEEK -O2
> -I/home4/vogelbacher_f/extlib-scratch3-felsim/boost-trunk/include
> -I/home4/vogelbacher_f/svnwork/dune-trunk/dune-common
> -I/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid
> -I/home4/vogelbacher_f/svnwork/dune-trunk/dune-istl
> -I/opt/mpi/openmpi-1.3.3-gcc-4.3.1/include -pthread -DMPIPP_H
> -DENABLE_MPI=1 -I/home4/vogelbacher_f/svnwork/dune-trunk/dune-common
> -DGRIDDIM=2 -DWORLDDIM=2 -DYASPGRID
> -I/opt/mpi/openmpi-1.3.3-gcc-4.3.1/include -pthread -DMPIPP_H
> -DENABLE_MPI=1
> -I/home4/vogelbacher_f/extlib-scratch3-felsim/ALUGrid-1.22/include
> -I/home4/vogelbacher_f/extlib-scratch3-felsim/ALUGrid-1.22/include/serial
> -I/home4/vogelbacher_f/extlib-scratch3-felsim/ALUGrid-1.22/include/duneinterface
> -DENABLE_ALUGRID
> -I/home4/vogelbacher_f/extlib-scratch3-felsim/ALUGrid-1.22/include/parallel
> -I/usr/include -DENABLE_GMP=1
> -I/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid
> -I/home4/vogelbacher_f/svnwork/dune-trunk/dune-istl
> -DMPICH_IGNORE_CXX_SEEK -O2 -MT integration-integration.o -MD -MP -MF
> ".deps/integration-integration.Tpo" -c -o integration-integration.o
> `test -f 'integration.cc' || echo './'`integration.cc; \
> then mv -f ".deps/integration-integration.Tpo"
> ".deps/integration-integration.Po"; else rm -f
> ".deps/integration-integration.Tpo"; exit 1; fi
> /home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/dune/grid/io/file/dgfparser/dgfyasp.hh:
> In member function ‘int Dune::DGFGridFactory<Dune::YaspGrid<dim>
> >::boundaryId(const Intersection&) const [with Intersection =
> Dune::Intersection<const Dune::YaspGrid<2>, Dune::YaspIntersection>,
> int dim = 2]’:
> /home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/dune/grid/io/file/dgfparser/dgfparser.hh:539:
> instantiated from ‘void
> Dune::GridPtr<GridType>::initialize(Dune::DGFGridFactory<GridType>&)
> [with GridType = Dune::YaspGrid<2>]’
> /home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/dune/grid/io/file/dgfparser/dgfparser.hh:355:
> instantiated from ‘Dune::GridPtr<GridType>::GridPtr(const
> std::string&, ompi_communicator_t*) [with GridType = Dune::YaspGrid<2>]’
> integration.cc:73: instantiated from here
> /home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/dune/grid/io/file/dgfparser/dgfyasp.hh:104:
> warning: ‘int Dune::Intersection<GridImp,
> IntersectionImp>::boundaryId() const [with GridImp = const
> Dune::YaspGrid<2>, IntersectionImp = Dune::YaspIntersection]’ is
> deprecated (declared at
> /home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/dune/grid/common/intersection.hh:231)
>
> /bin/sh ./libtool --tag=CXX --mode=link mpicxx -std=c++0x
> -DMPICH_IGNORE_CXX_SEEK -O2
> -L/home4/vogelbacher_f/extlib-scratch3-felsim/boost-trunk/ -o
> integration integration-integration.o
> -L/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/lib -ldunegrid
> -L/home4/vogelbacher_f/svnwork/dune-trunk/dune-common/lib -ldunecommon
> -L/home4/vogelbacher_f/extlib-scratch3-felsim/boost-trunk/
> -L/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/lib -ldunegrid
> -L/usr/lib -lgmpxx -lgmp
> -L/home4/vogelbacher_f/extlib-scratch3-felsim/ALUGrid-1.22/lib
> -lalugrid -pthread -L/opt/mpi/openmpi-1.3.3-gcc-4.3.1/lib -lmpi
> -lopen-rte -lopen-pal -ldl -Wl,--export-dynamic -lnsl -lutil -lm -ldl
> -lGL -L/usr/lib64 -lX11 -lm
> -L/home4/vogelbacher_f/svnwork/dune-trunk/dune-common/lib -ldunecommon
> -pthread -L/opt/mpi/openmpi-1.3.3-gcc-4.3.1/lib -lmpi -lopen-rte
> -lopen-pal -ldl -Wl,--export-dynamic -lnsl -lutil -lm -ldl
> -L/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/lib -ldunegrid
> -L/home4/vogelbacher_f/svnwork/dune-trunk/dune-common/lib -ldunecommon
> -L/home4/vogelbacher_f/svnwork/dune-trunk/dune-common/lib -ldunecommon
> -L/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/lib -ldunegrid
> -L/home4/vogelbacher_f/svnwork/dune-trunk/dune-common/lib -ldunecommon
> -lm -pthread -L/opt/mpi/openmpi-1.3.3-gcc-4.3.1/lib -lmpi
> -lopen-rte -lopen-pal -ldl -Wl,--export-dynamic -lnsl -lutil -lm -ldl -lm
> mpicxx -std=c++0x -DMPICH_IGNORE_CXX_SEEK -O2 -o integration
> integration-integration.o -pthread -Wl,--export-dynamic -pthread
> -Wl,--export-dynamic -pthread -Wl,--export-dynamic
> -L/home4/vogelbacher_f/extlib-scratch3-felsim/boost-trunk/
> -L/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/lib
> -L/home4/vogelbacher_f/svnwork/dune-trunk/dune-common/lib -L/usr/lib
> -lgmpxx -lgmp
> -L/home4/vogelbacher_f/extlib-scratch3-felsim/ALUGrid-1.22/lib
> -L/home4/vogelbacher_f/extlib-scratch3-felsim/metis-4.0
> -L/opt/mpi/openmpi-1.3.3-gcc-4.3.1/lib -lGL -L/usr/lib64 -lX11
> /home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/lib/.libs/libdunegrid.a
> /home4/vogelbacher_f/extlib-scratch3-felsim/ALUGrid-1.22/lib/libalugrid.a
> -lmetis
> /home4/vogelbacher_f/svnwork/dune-trunk/dune-common/lib/.libs/libdunecommon.a
> /opt/mpi/openmpi-1.3.3-gcc-4.3.1/lib/libmpi_cxx.so
> /opt/gcc/gcc-4.3.1/lib/../lib64/libstdc++.so
> /opt/mpi/openmpi-1.3.3-gcc-4.3.1/lib/libmpi.so
> /opt/mpi/openmpi-1.3.3-gcc-4.3.1/lib/libopen-rte.so
> /opt/mpi/openmpi-1.3.3-gcc-4.3.1/lib/libopen-pal.so -lnsl -lutil -ldl -lm
> if mpicxx -std=c++0x -DHAVE_CONFIG_H -I. -I. -I.
> -I/home4/vogelbacher_f/svnwork/dune-trunk/dune-common
> -I/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid
> -I/home4/vogelbacher_f/svnwork/dune-trunk/dune-istl -I.
> -DMPICH_IGNORE_CXX_SEEK -O2
> -I/home4/vogelbacher_f/extlib-scratch3-felsim/boost-trunk/include
> -I/opt/mpi/openmpi-1.3.3-gcc-4.3.1/include -pthread -DMPIPP_H
> -DENABLE_MPI=1 -DMPICH_IGNORE_CXX_SEEK -O2
> -I/home4/vogelbacher_f/extlib-scratch3-felsim/boost-trunk/include
> -I/home4/vogelbacher_f/svnwork/dune-trunk/dune-common
> -I/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid
> -I/home4/vogelbacher_f/svnwork/dune-trunk/dune-istl
> -I/opt/mpi/openmpi-1.3.3-gcc-4.3.1/include -pthread -DMPIPP_H
> -DENABLE_MPI=1 -I/home4/vogelbacher_f/svnwork/dune-trunk/dune-common
> -DGRIDDIM=2 -DWORLDDIM=2 -DYASPGRID
> -I/opt/mpi/openmpi-1.3.3-gcc-4.3.1/include -pthread -DMPIPP_H
> -DENABLE_MPI=1
> -I/home4/vogelbacher_f/extlib-scratch3-felsim/ALUGrid-1.22/include
> -I/home4/vogelbacher_f/extlib-scratch3-felsim/ALUGrid-1.22/include/serial
> -I/home4/vogelbacher_f/extlib-scratch3-felsim/ALUGrid-1.22/include/duneinterface
> -DENABLE_ALUGRID
> -I/home4/vogelbacher_f/extlib-scratch3-felsim/ALUGrid-1.22/include/parallel
> -I/usr/include -DENABLE_GMP=1
> -I/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid
> -I/home4/vogelbacher_f/svnwork/dune-trunk/dune-istl
> -DMPICH_IGNORE_CXX_SEEK -O2 -MT othergrids-othergrids.o -MD -MP -MF
> ".deps/othergrids-othergrids.Tpo" -c -o othergrids-othergrids.o `test
> -f 'othergrids.cc' || echo './'`othergrids.cc; \
> then mv -f ".deps/othergrids-othergrids.Tpo"
> ".deps/othergrids-othergrids.Po"; else rm -f
> ".deps/othergrids-othergrids.Tpo"; exit 1; fi
> /home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/dune/grid/utility/structuredgridfactory.hh:
> In constructor
> ‘Dune::StructuredGridFactory<GridType>::MultiIndex::MultiIndex(const
> std::array<unsigned int, Dune::StructuredGridFactory<GridType>::dim>&)
> [with GridType = Dune::ALUCubeGrid<3, 3>]’:
> /home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/dune/grid/utility/structuredgridfactory.hh:149:
> instantiated from ‘static std::shared_ptr<_Tp>
> Dune::StructuredGridFactory<GridType>::createCubeGrid(const
> Dune::FieldVector<typename GridType::ctype,
> Dune::StructuredGridFactory<GridType>::dimworld>&, const
> Dune::FieldVector<typename GridType::ctype,
> Dune::StructuredGridFactory<GridType>::dimworld>&, const
> std::array<unsigned int, Dune::StructuredGridFactory<GridType>::dim>&)
> [with GridType = Dune::ALUCubeGrid<3, 3>]’
> unitcube_alugrid.hh:55: instantiated from here
> /home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/dune/grid/utility/structuredgridfactory.hh:40:
> error: ‘class Dune::StructuredGridFactory<Dune::ALUCubeGrid<3, 3>
> >::MultiIndex’ has no member named ‘fill’
> /home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/dune/grid/utility/structuredgridfactory.hh:
> In constructor
> ‘Dune::StructuredGridFactory<GridType>::MultiIndex::MultiIndex(const
> std::array<unsigned int, Dune::StructuredGridFactory<GridType>::dim>&)
> [with GridType = Dune::OneDGrid]’:
> /home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/dune/grid/utility/structuredgridfactory.hh:149:
> instantiated from ‘static std::shared_ptr<_Tp>
> Dune::StructuredGridFactory<GridType>::createCubeGrid(const
> Dune::FieldVector<typename GridType::ctype,
> Dune::StructuredGridFactory<GridType>::dimworld>&, const
> Dune::FieldVector<typename GridType::ctype,
> Dune::StructuredGridFactory<GridType>::dimworld>&, const
> std::array<unsigned int, Dune::StructuredGridFactory<GridType>::dim>&)
> [with GridType = Dune::OneDGrid]’
> unitcube.hh:27: instantiated from ‘UnitCube<T, variant>::UnitCube()
> [with T = Dune::OneDGrid, int variant = 1]’
> othergrids.cc:20: instantiated from here
> /home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/dune/grid/utility/structuredgridfactory.hh:40:
> error: ‘class Dune::StructuredGridFactory<Dune::OneDGrid>::MultiIndex’
> has no member named ‘fill’
> make[2]: *** [othergrids-othergrids.o] Error 1
> make[2]: Leaving directory
> `/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid-howto'
> make[1]: *** [all-recursive] Error 1
> make[1]: Leaving directory
> `/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid-howto'
> make: *** [all] Error 2
> --- Failed to build dune-grid-howto ---
> Terminating dunecontrol due to previous errors!
>
>
--
************************************************************************
* Oliver Sander ** email: sander at mi.fu-berlin.de *
* Freie Universität Berlin ** phone: + 49 (30) 838 75348 *
* Institut für Mathematik ** URL : page.mi.fu-berlin.de/~sander *
* Arnimallee 6 ** -------------------------------------*
* 14195 Berlin, Germany ** Member of MATHEON (www.matheon.de) *
************************************************************************
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