[Dune] Dune-grid-howto build problem
Vogelbacher Florian
Florian.Vogelbacher at psi.ch
Fri Sep 3 18:29:33 CEST 2010
Hi Oliver,
I made an svn update, however the same bug is still there. Maybe it's
only me having this problem?
Oliver Sander wrote:
> fixed.
> O
>
> Am 2010-09-03 10:40, schrieb Vogelbacher Florian:
>> Dear Dune,
>>
>> Setting up a new dune installation I got problems in compiling the
>> dune-grid-howto. I'm not totaly sure if it is related to dune or to
>> ALUGrid, but maybe you can see more in the logs.
>>
>> Thanks a lot in advance!
>> Florian
>>
>> 1.) dune-common version
>> URL: https://svn.dune-project.org/svn/dune-common/trunk
>> Repository Root: https://svn.dune-project.org/svn/dune-common
>> Repository UUID: 419231ca-4411-0410-aba2-fc6cf8c4f609
>> Revision: 6119
>> Node Kind: directory
>> Schedule: normal
>> Last Changed Author: sander
>> Last Changed Rev: 6119
>> Last Changed Date: 2010-09-02 08:47:05 +0200 (Thu, 02 Sep 2010)
>>
>> 2.) dune-grid version
>> URL: https://svn.dune-project.org/svn/dune-grid/trunk
>> Repository Root: https://svn.dune-project.org/svn/dune-grid
>> Repository UUID: f82f27de-4411-0410-b156-930a902cda50
>> Revision: 6928
>> Node Kind: directory
>> Schedule: normal
>> Last Changed Author: christi
>> Last Changed Rev: 6928
>> Last Changed Date: 2010-09-01 22:25:03 +0200 (Wed, 01 Sep 2010)
>>
>> 4.) dune-istl version
>> URL: https://svn.dune-project.org/svn/dune-istl/trunk
>> Repository Root: https://svn.dune-project.org/svn/dune-istl
>> Repository UUID: 8c7282f0-4411-0410-8e4f-cdd3e049afb8
>> Revision: 1286
>> Node Kind: directory
>> Schedule: normal
>> Last Changed Author: christi
>> Last Changed Rev: 1286
>> Last Changed Date: 2010-09-01 22:33:34 +0200 (Wed, 01 Sep 2010)
>>
>> 5.) dune-localfunction
>> URL: https://svn.dune-project.org/svn/dune-localfunctions/trunk
>> Repository Root: https://svn.dune-project.org/svn/dune-localfunctions
>> Repository UUID: 99935a23-074d-4cae-87b7-4e54ca08e5e1
>> Revision: 885
>> Node Kind: directory
>> Schedule: normal
>> Last Changed Author: sander
>> Last Changed Rev: 884
>> Last Changed Date: 2010-06-22 20:46:31 +0200 (Tue, 22 Jun 2010)
>> Now run ./configure to setup dune-grid-howto
>>
>> 6.) gcc and system
>> $ gcc --version
>> gcc (GCC) 4.3.1
>> $ uname -a
>> Linux felsim01 2.6.18-194.8.1.el5 #1 SMP Thu Jul 1 16:05:53 EDT 2010
>> x86_64 x86_64 x86_64 GNU/Linux
>>
>> 7.) finally my problem :-)
>> --- calling configure for dune-grid-howto ---
>> ----- using default flags $CONFIGURE_FLAGS from
>> /home4/vogelbacher_f/svnwork/dune-trunk/dune.felsim.opts -----
>> ./configure CXX='mpicxx' CC='mpicc' LD='mpicxx'
>> CXXFLAGS='-DMPICH_IGNORE_CXX_SEEK -O2'
>> CPPFLAGS='-DMPICH_IGNORE_CXX_SEEK -O2' LDFLAGS=' '
>> --disable-documentation --enable-parallel --enable-debug-output
>> --enable-experimental-hades3delectrostatic
>> --with-boost='/home4/vogelbacher_f/extlib-scratch3-felsim/boost-trunk'
>> --with-metis='/home4/vogelbacher_f/extlib-scratch3-felsim/metis-4.0'
>> --with-rlog='/home4/vogelbacher_f/extlib-scratch3-felsim/rlog-1.4'
>> --with-alugrid='/home4/vogelbacher_f/extlib-scratch3-felsim/ALUGrid-1.22'
>> "--with-dune-common=/home4/vogelbacher_f/svnwork/dune-trunk/dune-common/"
>> "--with-dune-grid=/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/"
>> "--with-dune-istl=/home4/vogelbacher_f/svnwork/dune-trunk/dune-istl/"
>> ACLOCAL_AMFLAGS="-I . -I
>> /home4/vogelbacher_f/svnwork/dune-trunk/dune-common/m4 -I
>> /home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/m4 -I
>> /home4/vogelbacher_f/svnwork/dune-trunk/dune-istl/m4"
>> checking for a BSD-compatible install... /usr/bin/install -c
>> checking whether build environment is sane... yes
>> checking for gawk... gawk
>> checking whether make sets $(MAKE)... yes
>> checking how to create a pax tar archive... gnutar
>> checking how to create a pax tar archive... (cached) gnutar
>> checking for latex... latex
>> checking for bibtex... bibtex
>> checking for dvipdf... dvipdf
>> checking for dvips... dvips
>> checking for wml... no
>> checking for tex4ht... no
>> checking for mk4ht... no
>> checking for t4ht... no
>> checking for convert... convert
>> checking for inkscape... no
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>> checking for latex... (cached) latex
>> checking for bibtex... (cached) bibtex
>> checking for dvipdf... (cached) dvipdf
>> checking for dvips... (cached) dvips
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>> checking for convert... (cached) convert
>> checking for pkg-config... /usr/bin/pkg-config
>> checking pkg-config is at least version 0.9.0... yes
>> checking for style of include used by make... GNU
>> checking for gcc... mpicc
>> checking for C compiler default output file name... a.out
>> checking whether the C compiler works... yes
>> checking whether we are cross compiling... no
>> checking for suffix of executables...
>> checking for suffix of object files... o
>> checking whether we are using the GNU C compiler... yes
>> checking whether mpicc accepts -g... yes
>> checking for mpicc option to accept ANSI C... none needed
>> checking dependency style of mpicc... gcc3
>> checking dependency style of mpicc... (cached) gcc3
>> checking how to run the C preprocessor... mpicc -E
>> checking whether we are using the GNU C++ compiler... yes
>> checking whether mpicxx accepts -g... yes
>> checking dependency style of mpicxx... gcc3
>> checking dependency style of mpicxx... (cached) gcc3
>> checking how to run the C++ preprocessor... mpicxx -E
>> checking for g77... g77
>> checking whether we are using the GNU Fortran 77 compiler... yes
>> checking whether g77 accepts -g... yes
>> checking build system type... x86_64-redhat-linux-gnu
>> checking host system type... x86_64-redhat-linux-gnu
>> checking for a sed that does not truncate output... /bin/sed
>> checking for egrep... grep -E
>> checking for ld used by mpicc... mpicxx
>> checking if the linker (mpicxx) is GNU ld... no
>> checking for mpicxx option to reload object files... -r
>> checking for BSD-compatible nm... /usr/bin/nm -B
>> checking whether ln -s works... yes
>> checking how to recognise dependent libraries... pass_all
>> checking for ANSI C header files... yes
>> checking for sys/types.h... yes
>> checking for sys/stat.h... yes
>> checking for stdlib.h... yes
>> checking for string.h... yes
>> checking for memory.h... yes
>> checking for strings.h... yes
>> checking for inttypes.h... yes
>> checking for stdint.h... yes
>> checking for unistd.h... yes
>> checking dlfcn.h usability... yes
>> checking dlfcn.h presence... yes
>> checking for dlfcn.h... yes
>> checking how to run the C++ preprocessor... mpicxx -E
>> checking the maximum length of command line arguments... 32768
>> checking command to parse /usr/bin/nm -B output from mpicc object... ok
>> checking for objdir... .libs
>> checking for ar... ar
>> checking for ranlib... ranlib
>> checking for strip... strip
>> checking if mpicc supports -fno-rtti -fno-exceptions... no
>> checking for mpicc option to produce PIC... -fPIC
>> checking if mpicc PIC flag -fPIC works... yes
>> checking if mpicc static flag -static works... no
>> checking if mpicc supports -c -o file.o... yes
>> checking whether the mpicc linker (mpicxx -m elf_x86_64) supports
>> shared libraries... no
>> checking dynamic linker characteristics... GNU/Linux ld.so
>> checking how to hardcode library paths into programs... unsupported
>> checking whether stripping libraries is possible... yes
>> checking if libtool supports shared libraries... no
>> checking whether to build shared libraries... no
>> checking whether to build static libraries... yes
>> configure: creating libtool
>> appending configuration tag "CXX" to libtool
>> checking for ld used by mpicxx... mpicxx -m elf_x86_64
>> checking if the linker (mpicxx -m elf_x86_64) is GNU ld... no
>> checking whether the mpicxx linker (mpicxx -m elf_x86_64) supports
>> shared libraries... yes
>> checking for mpicxx option to produce PIC... -fPIC
>> checking if mpicxx PIC flag -fPIC works... yes
>> checking if mpicxx static flag -static works... no
>> checking if mpicxx supports -c -o file.o... yes
>> checking whether the mpicxx linker (mpicxx -m elf_x86_64) supports
>> shared libraries... yes
>> checking dynamic linker characteristics... GNU/Linux ld.so
>> checking how to hardcode library paths into programs... unsupported
>> appending configuration tag "F77" to libtool
>> checking if libtool supports shared libraries... no
>> checking whether to build shared libraries... no
>> checking whether to build static libraries... yes
>> checking for g77 option to produce PIC... -fPIC
>> checking if g77 PIC flag -fPIC works... yes
>> checking if g77 static flag -static works... yes
>> checking if g77 supports -c -o file.o... yes
>> checking whether the g77 linker (mpicxx -m elf_x86_64) supports shared
>> libraries... no
>> checking dynamic linker characteristics... GNU/Linux ld.so
>> checking how to hardcode library paths into programs... unsupported
>> checking for ranlib... (cached) ranlib
>> checking whether compiler is officially supported by DUNE... yes
>> checking whether g++ accepts -std=c++0x... yes
>> checking whether static_assert is supported... yes
>> checking whether nullptr is supported... no
>> checking type_traits usability... yes
>> checking type_traits presence... yes
>> checking for type_traits... yes
>> checking tr1/type_traits usability... yes
>> checking tr1/type_traits presence... yes
>> checking for tr1/type_traits... yes
>> checking array usability... yes
>> checking array presence... yes
>> checking for array... yes
>> checking tr1/array usability... yes
>> checking tr1/array presence... yes
>> checking for tr1/array... yes
>> checking tuple usability... yes
>> checking tuple presence... yes
>> checking for tuple... yes
>> checking tr1/tuple usability... yes
>> checking tr1/tuple presence... yes
>> checking for tr1/tuple... yes
>> checking memory usability... yes
>> checking memory presence... yes
>> checking for memory... yes
>> checking tr1/memory usability... yes
>> checking tr1/memory presence... yes
>> checking for tr1/memory... yes
>> checking boost/shared_ptr.hpp usability... yes
>> checking boost/shared_ptr.hpp presence... yes
>> checking for boost/shared_ptr.hpp... yes
>> checking the location of shared_ptr header file...
>> checking whether compiling C++ code works... yes
>> checking whether linking C++ objects works... yes
>> checking for __attribute__((deprecated))... yes
>> checking rpc/rpc.h usability... yes
>> checking rpc/rpc.h presence... yes
>> checking for rpc/rpc.h... yes
>> checking for mpicc... mpicc
>> checking for MPI_Init... yes
>> checking for mpi.h... yes
>> configure: Trying to identify the version of MPI compiler mpicc
>> checking for lam... no
>> checking for mpich... no
>> checking for OpenMPI... yes
>> checking whether compiling with OpenMPI works... yes
>> configure: WARNING: Disabled test whether running with OpenMPI works.
>> checking for MPI_Finalized in -lm... yes
>> checking for an ANSI C-conforming const... yes
>> checking for inline... inline
>> checking for size_t... yes
>> checking whether struct tm is in sys/time.h or time.h... time.h
>> checking for stdlib.h... (cached) yes
>> checking for GNU libc compatible malloc... yes
>> checking malloc.h usability... yes
>> checking malloc.h presence... yes
>> checking for malloc.h... yes
>> checking for string.h... (cached) yes
>> checking for pow in -lm... yes
>> checking for sqrt... yes
>> checking for strchr... yes
>> checking for dune-common installation or source tree... found in
>> /home4/vogelbacher_f/svnwork/dune-trunk/dune-common
>> checking dune/common/stdstreams.hh usability... yes
>> checking dune/common/stdstreams.hh presence... yes
>> checking for dune/common/stdstreams.hh... yes
>> checking for libdunecommon... yes
>> checking for X... libraries /usr/lib64, headers
>> checking for gethostbyname... yes
>> checking for connect... yes
>> checking for remove... yes
>> checking for shmat... yes
>> checking for IceConnectionNumber in -lICE... yes
>> checking for the pthreads library -lpthreads... no
>> checking whether pthreads work without any flags... yes
>> checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE
>> checking if more special flags are required for pthreads... no
>> checking for cc_r... mpicc
>> checking whether we are using the Microsoft C compiler... no
>> checking windows.h usability... no
>> checking windows.h presence... no
>> checking for windows.h... no
>> checking for OpenGL library... -lGL
>> checking grape.h usability... no
>> checking grape.h presence... no
>> checking for grape.h... no
>> configure: searching for ALBERTA in /usr...
>> configure: searching for ALBERTA in /usr/local...
>> configure: searching for ALBERTA in /usr/local/alberta...
>> configure: searching for ALBERTA in /opt/alberta...
>> checking alberta.h usability... no
>> checking alberta.h presence... no
>> checking for alberta.h... no
>> configure: WARNING: alberta.h not found in -I/include/alberta
>> checking /usr/local/ug/include//gm.h usability... no
>> checking /usr/local/ug/include//gm.h presence... no
>> checking for /usr/local/ug/include//gm.h... no
>> configure: WARNING: gm.h not found in /usr/local/ug/include/
>> checking for amiramesh/AmiraMesh.h... no
>> configure: WARNING: AmiraMesh.h not found in
>> /usr/local/amiramesh/include/amiramesh
>> checking psurface.h usability... no
>> checking psurface.h presence... no
>> checking for psurface.h... no
>> checking ALUGrid version >= 1.22... yes (ALUGrid-1.22)
>> checking alugrid_serial.h usability... yes
>> checking alugrid_serial.h presence... yes
>> checking for alugrid_serial.h... yes
>> checking alugrid_parallel.h usability... yes
>> checking alugrid_parallel.h presence... yes
>> checking for alugrid_parallel.h... yes
>> checking for malloc in -lalugrid... yes
>> configure: searching for GMP in /usr...
>> checking gmpxx.h usability... yes
>> checking gmpxx.h presence... yes
>> checking for gmpxx.h... yes
>> checking for __gmpz_abs in -L/usr/lib -lgmp... yes
>> checking for alglib4dune (>=1.0) via pkgconfig... no
>> checking for dune-grid installation or source tree... found in
>> /home4/vogelbacher_f/svnwork/dune-trunk/dune-grid
>> checking dune/grid/onedgrid.hh usability... yes
>> checking dune/grid/onedgrid.hh presence... yes
>> checking for dune/grid/onedgrid.hh... yes
>> checking for libdunegrid... yes
>> checking for ParMETIS library... failed
>> checking how to get verbose linking output from g77... -v
>> checking for Fortran libraries of g77...
>> -L/usr/lib/gcc/x86_64-redhat-linux/3.4.6
>> -L/usr/lib/gcc/x86_64-redhat-linux/3.4.6/../../../../lib64
>> -L/usr/lib/gcc/x86_64-redhat-linux/3.4.6/../../.. -L/lib/../lib64
>> -L/usr/lib/../lib64 -lfrtbegin -lg2c -lm -lgcc_s
>> checking for dummy main to link with Fortran libraries... none
>> checking for Fortran name-mangling scheme... lower case, underscore,
>> extra underscore
>> checking for sgemm_... no
>> checking for ATL_xerbla in -latlas... no
>> checking for sgemm_ in -lblas... yes
>> checking for dgemm_ in -ldgemm... no
>> checking for sgemm_ in -lcxml... no
>> checking for sgemm_ in -ldxml... no
>> checking for sgemm_ in -lscs... no
>> checking for sgemm_ in -lcomplib.sgimath... no
>> checking for sgemm_ in -lblas... (cached) yes
>> checking for sgemm_ in -lessl... no
>> checking for sgemm_ in -lblas... (cached) yes
>> checking dsp_defs.h usability... no
>> checking dsp_defs.h presence... no
>> checking for dsp_defs.h... no
>> configure: WARNING: dsp_defs.h not found in /usr/local/SRC with
>> -DMPICH_IGNORE_CXX_SEEK -O2 -I/usr/local/SRC -DENABLE_SUPERLU
>> checking SuperLU... no
>> checking for SuperLUDist library... checking superlu_ddefs.h
>> usability... no
>> checking superlu_ddefs.h presence... no
>> checking for superlu_ddefs.h... no
>> configure: WARNING: superlu_ddefs.h not found in /usr/local/SRC with
>> -DMPICH_IGNORE_CXX_SEEK -O2 -I/usr/local/SRC
>> -I/opt/mpi/openmpi-1.3.3-gcc-4.3.1/include -pthread -DMPIPP_H
>> -DENABLE_MPI=1
>> checking SuperLUDist in /usr/local... failed
>> checking for cheev_... no
>> checking for cheev_ in -llapack... yes
>> checking for METIS library... yes
>> checking for METIS_PartMeshDual in -lmetis... yes
>> checking for metis.h... yes
>> xyes
>> checking METIS in
>> /home4/vogelbacher_f/extlib-scratch3-felsim/metis-4.0... ok
>> checking for boostlib >= 1.20.0... yes
>> checking whether the Boost::FUSION library is available... yes
>> checking for dune-istl installation or source tree... found in
>> /home4/vogelbacher_f/svnwork/dune-trunk/dune-istl
>> checking dune/istl/istlexception.hh usability... yes
>> checking dune/istl/istlexception.hh presence... yes
>> checking for dune/istl/istlexception.hh... yes
>> configure: dune-istl does not provide libs
>> configure: creating ./config.status
>> config.status: creating Makefile
>> config.status: creating doc/Makefile
>> config.status: creating doc/config.tex
>> config.status: creating grids/Makefile
>> config.status: creating dune-grid-howto.pc
>> config.status: creating config.h
>> config.status: executing depfiles commands
>>
>> Found the following Dune-components:
>>
>> ----------------------------------------
>>
>> dune-common.............: version 2.1-svn
>> dune-grid...............: version 2.1-svn
>> dune-istl...............: version 2.1-svn
>> ALBERTA.................: no
>> ALUGrid.................: version 1.22
>> AlgLib for DUNE.........: no
>> AmiraMesh...............: no
>> BLAS....................: yes
>> GMP.....................: yes
>> Grape...................: no
>> METIS...................: yes
>> MPI.....................: yes (OpenMPI)
>> OpenGL..................: yes
>> ParMETIS................: no
>> SuperLU-DIST............: no
>> SuperLU.................: no
>> UG......................: no
>> psurface................: no
>>
>> ----------------------------------------
>>
>> See ./configure --help and config.log for reasons why a component
>> wasn't found
>>
>> --- calling make for dune-grid-howto ---
>> make
>> make all-recursive
>> make[1]: Entering directory
>> `/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid-howto'
>> Making all in doc
>> make[2]: Entering directory
>> `/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid-howto/doc'
>> make[2]: Nothing to be done for `all'.
>> make[2]: Leaving directory
>> `/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid-howto/doc'
>> Making all in grids
>> make[2]: Entering directory
>> `/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid-howto/grids'
>> make[2]: Nothing to be done for `all'.
>> make[2]: Leaving directory
>> `/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid-howto/grids'
>> make[2]: Entering directory
>> `/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid-howto'
>> if mpicxx -std=c++0x -DHAVE_CONFIG_H -I. -I. -I.
>> -I/home4/vogelbacher_f/svnwork/dune-trunk/dune-common
>> -I/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid
>> -I/home4/vogelbacher_f/svnwork/dune-trunk/dune-istl -I.
>> -DMPICH_IGNORE_CXX_SEEK -O2
>> -I/home4/vogelbacher_f/extlib-scratch3-felsim/boost-trunk/include
>> -I/opt/mpi/openmpi-1.3.3-gcc-4.3.1/include -pthread -DMPIPP_H
>> -DENABLE_MPI=1 -DMPICH_IGNORE_CXX_SEEK -O2
>> -I/home4/vogelbacher_f/extlib-scratch3-felsim/boost-trunk/include
>> -I/home4/vogelbacher_f/svnwork/dune-trunk/dune-common
>> -I/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid
>> -I/home4/vogelbacher_f/svnwork/dune-trunk/dune-istl
>> -I/opt/mpi/openmpi-1.3.3-gcc-4.3.1/include -pthread -DMPIPP_H
>> -DENABLE_MPI=1 -I/home4/vogelbacher_f/svnwork/dune-trunk/dune-common
>> -DGRIDDIM=2 -DWORLDDIM=2 -DYASPGRID
>> -I/opt/mpi/openmpi-1.3.3-gcc-4.3.1/include -pthread -DMPIPP_H
>> -DENABLE_MPI=1
>> -I/home4/vogelbacher_f/extlib-scratch3-felsim/ALUGrid-1.22/include
>> -I/home4/vogelbacher_f/extlib-scratch3-felsim/ALUGrid-1.22/include/serial
>> -I/home4/vogelbacher_f/extlib-scratch3-felsim/ALUGrid-1.22/include/duneinterface
>> -DENABLE_ALUGRID
>> -I/home4/vogelbacher_f/extlib-scratch3-felsim/ALUGrid-1.22/include/parallel
>> -I/usr/include -DENABLE_GMP=1
>> -I/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid
>> -I/home4/vogelbacher_f/svnwork/dune-trunk/dune-istl
>> -DMPICH_IGNORE_CXX_SEEK -O2 -MT gettingstarted-gettingstarted.o -MD
>> -MP -MF ".deps/gettingstarted-gettingstarted.Tpo" -c -o
>> gettingstarted-gettingstarted.o `test -f 'gettingstarted.cc' || echo
>> './'`gettingstarted.cc; \
>> then mv -f ".deps/gettingstarted-gettingstarted.Tpo"
>> ".deps/gettingstarted-gettingstarted.Po"; else rm -f
>> ".deps/gettingstarted-gettingstarted.Tpo"; exit 1; fi
>> /bin/sh ./libtool --tag=CXX --mode=link mpicxx -std=c++0x
>> -DMPICH_IGNORE_CXX_SEEK -O2
>> -L/home4/vogelbacher_f/extlib-scratch3-felsim/boost-trunk/ -o
>> gettingstarted gettingstarted-gettingstarted.o
>> -L/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/lib -ldunegrid
>> -L/home4/vogelbacher_f/svnwork/dune-trunk/dune-common/lib -ldunecommon
>> -L/home4/vogelbacher_f/extlib-scratch3-felsim/boost-trunk/
>> -L/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/lib -ldunegrid
>> -L/usr/lib -lgmpxx -lgmp
>> -L/home4/vogelbacher_f/extlib-scratch3-felsim/ALUGrid-1.22/lib
>> -lalugrid -pthread -L/opt/mpi/openmpi-1.3.3-gcc-4.3.1/lib -lmpi
>> -lopen-rte -lopen-pal -ldl -Wl,--export-dynamic -lnsl -lutil -lm -ldl
>> -lGL -L/usr/lib64 -lX11 -lm
>> -L/home4/vogelbacher_f/svnwork/dune-trunk/dune-common/lib -ldunecommon
>> -pthread -L/opt/mpi/openmpi-1.3.3-gcc-4.3.1/lib -lmpi -lopen-rte
>> -lopen-pal -ldl -Wl,--export-dynamic -lnsl -lutil -lm -ldl
>> -L/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/lib -ldunegrid
>> -L/home4/vogelbacher_f/svnwork/dune-trunk/dune-common/lib -ldunecommon
>> -L/home4/vogelbacher_f/svnwork/dune-trunk/dune-common/lib -ldunecommon
>> -L/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/lib -ldunegrid
>> -L/home4/vogelbacher_f/svnwork/dune-trunk/dune-common/lib -ldunecommon
>> -lm -pthread -L/opt/mpi/openmpi-1.3.3-gcc-4.3.1/lib -lmpi
>> -lopen-rte -lopen-pal -ldl -Wl,--export-dynamic -lnsl -lutil -lm -ldl -lm
>> mpicxx -std=c++0x -DMPICH_IGNORE_CXX_SEEK -O2 -o gettingstarted
>> gettingstarted-gettingstarted.o -pthread -Wl,--export-dynamic -pthread
>> -Wl,--export-dynamic -pthread -Wl,--export-dynamic
>> -L/home4/vogelbacher_f/extlib-scratch3-felsim/boost-trunk/
>> -L/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/lib
>> -L/home4/vogelbacher_f/svnwork/dune-trunk/dune-common/lib -L/usr/lib
>> -lgmpxx -lgmp
>> -L/home4/vogelbacher_f/extlib-scratch3-felsim/ALUGrid-1.22/lib
>> -L/home4/vogelbacher_f/extlib-scratch3-felsim/metis-4.0
>> -L/opt/mpi/openmpi-1.3.3-gcc-4.3.1/lib -lGL -L/usr/lib64 -lX11
>> /home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/lib/.libs/libdunegrid.a
>> /home4/vogelbacher_f/extlib-scratch3-felsim/ALUGrid-1.22/lib/libalugrid.a
>> -lmetis
>> /home4/vogelbacher_f/svnwork/dune-trunk/dune-common/lib/.libs/libdunecommon.a
>> /opt/mpi/openmpi-1.3.3-gcc-4.3.1/lib/libmpi_cxx.so
>> /opt/gcc/gcc-4.3.1/lib/../lib64/libstdc++.so
>> /opt/mpi/openmpi-1.3.3-gcc-4.3.1/lib/libmpi.so
>> /opt/mpi/openmpi-1.3.3-gcc-4.3.1/lib/libopen-rte.so
>> /opt/mpi/openmpi-1.3.3-gcc-4.3.1/lib/libopen-pal.so -lnsl -lutil -ldl -lm
>> if mpicxx -std=c++0x -DHAVE_CONFIG_H -I. -I. -I.
>> -I/home4/vogelbacher_f/svnwork/dune-trunk/dune-common
>> -I/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid
>> -I/home4/vogelbacher_f/svnwork/dune-trunk/dune-istl -I.
>> -DMPICH_IGNORE_CXX_SEEK -O2
>> -I/home4/vogelbacher_f/extlib-scratch3-felsim/boost-trunk/include
>> -I/opt/mpi/openmpi-1.3.3-gcc-4.3.1/include -pthread -DMPIPP_H
>> -DENABLE_MPI=1 -DMPICH_IGNORE_CXX_SEEK -O2
>> -I/home4/vogelbacher_f/extlib-scratch3-felsim/boost-trunk/include
>> -I/home4/vogelbacher_f/svnwork/dune-trunk/dune-common
>> -I/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid
>> -I/home4/vogelbacher_f/svnwork/dune-trunk/dune-istl
>> -I/opt/mpi/openmpi-1.3.3-gcc-4.3.1/include -pthread -DMPIPP_H
>> -DENABLE_MPI=1 -I/home4/vogelbacher_f/svnwork/dune-trunk/dune-common
>> -DGRIDDIM=2 -DWORLDDIM=2 -DYASPGRID
>> -I/opt/mpi/openmpi-1.3.3-gcc-4.3.1/include -pthread -DMPIPP_H
>> -DENABLE_MPI=1
>> -I/home4/vogelbacher_f/extlib-scratch3-felsim/ALUGrid-1.22/include
>> -I/home4/vogelbacher_f/extlib-scratch3-felsim/ALUGrid-1.22/include/serial
>> -I/home4/vogelbacher_f/extlib-scratch3-felsim/ALUGrid-1.22/include/duneinterface
>> -DENABLE_ALUGRID
>> -I/home4/vogelbacher_f/extlib-scratch3-felsim/ALUGrid-1.22/include/parallel
>> -I/usr/include -DENABLE_GMP=1
>> -I/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid
>> -I/home4/vogelbacher_f/svnwork/dune-trunk/dune-istl
>> -DMPICH_IGNORE_CXX_SEEK -O2 -MT traversal-traversal.o -MD -MP -MF
>> ".deps/traversal-traversal.Tpo" -c -o traversal-traversal.o `test -f
>> 'traversal.cc' || echo './'`traversal.cc; \
>> then mv -f ".deps/traversal-traversal.Tpo"
>> ".deps/traversal-traversal.Po"; else rm -f
>> ".deps/traversal-traversal.Tpo"; exit 1; fi
>> /bin/sh ./libtool --tag=CXX --mode=link mpicxx -std=c++0x
>> -DMPICH_IGNORE_CXX_SEEK -O2
>> -L/home4/vogelbacher_f/extlib-scratch3-felsim/boost-trunk/ -o
>> traversal traversal-traversal.o
>> -L/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/lib -ldunegrid
>> -L/home4/vogelbacher_f/svnwork/dune-trunk/dune-common/lib -ldunecommon
>> -L/home4/vogelbacher_f/extlib-scratch3-felsim/boost-trunk/
>> -L/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/lib -ldunegrid
>> -L/usr/lib -lgmpxx -lgmp
>> -L/home4/vogelbacher_f/extlib-scratch3-felsim/ALUGrid-1.22/lib
>> -lalugrid -pthread -L/opt/mpi/openmpi-1.3.3-gcc-4.3.1/lib -lmpi
>> -lopen-rte -lopen-pal -ldl -Wl,--export-dynamic -lnsl -lutil -lm -ldl
>> -lGL -L/usr/lib64 -lX11 -lm
>> -L/home4/vogelbacher_f/svnwork/dune-trunk/dune-common/lib -ldunecommon
>> -pthread -L/opt/mpi/openmpi-1.3.3-gcc-4.3.1/lib -lmpi -lopen-rte
>> -lopen-pal -ldl -Wl,--export-dynamic -lnsl -lutil -lm -ldl
>> -L/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/lib -ldunegrid
>> -L/home4/vogelbacher_f/svnwork/dune-trunk/dune-common/lib -ldunecommon
>> -L/home4/vogelbacher_f/svnwork/dune-trunk/dune-common/lib -ldunecommon
>> -L/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/lib -ldunegrid
>> -L/home4/vogelbacher_f/svnwork/dune-trunk/dune-common/lib -ldunecommon
>> -lm -pthread -L/opt/mpi/openmpi-1.3.3-gcc-4.3.1/lib -lmpi
>> -lopen-rte -lopen-pal -ldl -Wl,--export-dynamic -lnsl -lutil -lm -ldl -lm
>> mpicxx -std=c++0x -DMPICH_IGNORE_CXX_SEEK -O2 -o traversal
>> traversal-traversal.o -pthread -Wl,--export-dynamic -pthread
>> -Wl,--export-dynamic -pthread -Wl,--export-dynamic
>> -L/home4/vogelbacher_f/extlib-scratch3-felsim/boost-trunk/
>> -L/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/lib
>> -L/home4/vogelbacher_f/svnwork/dune-trunk/dune-common/lib -L/usr/lib
>> -lgmpxx -lgmp
>> -L/home4/vogelbacher_f/extlib-scratch3-felsim/ALUGrid-1.22/lib
>> -L/home4/vogelbacher_f/extlib-scratch3-felsim/metis-4.0
>> -L/opt/mpi/openmpi-1.3.3-gcc-4.3.1/lib -lGL -L/usr/lib64 -lX11
>> /home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/lib/.libs/libdunegrid.a
>> /home4/vogelbacher_f/extlib-scratch3-felsim/ALUGrid-1.22/lib/libalugrid.a
>> -lmetis
>> /home4/vogelbacher_f/svnwork/dune-trunk/dune-common/lib/.libs/libdunecommon.a
>> /opt/mpi/openmpi-1.3.3-gcc-4.3.1/lib/libmpi_cxx.so
>> /opt/gcc/gcc-4.3.1/lib/../lib64/libstdc++.so
>> /opt/mpi/openmpi-1.3.3-gcc-4.3.1/lib/libmpi.so
>> /opt/mpi/openmpi-1.3.3-gcc-4.3.1/lib/libopen-rte.so
>> /opt/mpi/openmpi-1.3.3-gcc-4.3.1/lib/libopen-pal.so -lnsl -lutil -ldl -lm
>> if mpicxx -std=c++0x -DHAVE_CONFIG_H -I. -I. -I.
>> -I/home4/vogelbacher_f/svnwork/dune-trunk/dune-common
>> -I/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid
>> -I/home4/vogelbacher_f/svnwork/dune-trunk/dune-istl -I.
>> -DMPICH_IGNORE_CXX_SEEK -O2
>> -I/home4/vogelbacher_f/extlib-scratch3-felsim/boost-trunk/include
>> -I/opt/mpi/openmpi-1.3.3-gcc-4.3.1/include -pthread -DMPIPP_H
>> -DENABLE_MPI=1 -DMPICH_IGNORE_CXX_SEEK -O2
>> -I/home4/vogelbacher_f/extlib-scratch3-felsim/boost-trunk/include
>> -I/home4/vogelbacher_f/svnwork/dune-trunk/dune-common
>> -I/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid
>> -I/home4/vogelbacher_f/svnwork/dune-trunk/dune-istl
>> -I/opt/mpi/openmpi-1.3.3-gcc-4.3.1/include -pthread -DMPIPP_H
>> -DENABLE_MPI=1 -I/home4/vogelbacher_f/svnwork/dune-trunk/dune-common
>> -DGRIDDIM=2 -DWORLDDIM=2 -DYASPGRID
>> -I/opt/mpi/openmpi-1.3.3-gcc-4.3.1/include -pthread -DMPIPP_H
>> -DENABLE_MPI=1
>> -I/home4/vogelbacher_f/extlib-scratch3-felsim/ALUGrid-1.22/include
>> -I/home4/vogelbacher_f/extlib-scratch3-felsim/ALUGrid-1.22/include/serial
>> -I/home4/vogelbacher_f/extlib-scratch3-felsim/ALUGrid-1.22/include/duneinterface
>> -DENABLE_ALUGRID
>> -I/home4/vogelbacher_f/extlib-scratch3-felsim/ALUGrid-1.22/include/parallel
>> -I/usr/include -DENABLE_GMP=1
>> -I/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid
>> -I/home4/vogelbacher_f/svnwork/dune-trunk/dune-istl
>> -DMPICH_IGNORE_CXX_SEEK -O2 -MT integration-integration.o -MD -MP -MF
>> ".deps/integration-integration.Tpo" -c -o integration-integration.o
>> `test -f 'integration.cc' || echo './'`integration.cc; \
>> then mv -f ".deps/integration-integration.Tpo"
>> ".deps/integration-integration.Po"; else rm -f
>> ".deps/integration-integration.Tpo"; exit 1; fi
>> /home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/dune/grid/io/file/dgfparser/dgfyasp.hh:
>> In member function ‘int Dune::DGFGridFactory<Dune::YaspGrid<dim>
>> >::boundaryId(const Intersection&) const [with Intersection =
>> Dune::Intersection<const Dune::YaspGrid<2>, Dune::YaspIntersection>,
>> int dim = 2]’:
>> /home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/dune/grid/io/file/dgfparser/dgfparser.hh:539:
>> instantiated from ‘void
>> Dune::GridPtr<GridType>::initialize(Dune::DGFGridFactory<GridType>&)
>> [with GridType = Dune::YaspGrid<2>]’
>> /home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/dune/grid/io/file/dgfparser/dgfparser.hh:355:
>> instantiated from ‘Dune::GridPtr<GridType>::GridPtr(const
>> std::string&, ompi_communicator_t*) [with GridType = Dune::YaspGrid<2>]’
>> integration.cc:73: instantiated from here
>> /home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/dune/grid/io/file/dgfparser/dgfyasp.hh:104:
>> warning: ‘int Dune::Intersection<GridImp,
>> IntersectionImp>::boundaryId() const [with GridImp = const
>> Dune::YaspGrid<2>, IntersectionImp = Dune::YaspIntersection]’ is
>> deprecated (declared at
>> /home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/dune/grid/common/intersection.hh:231)
>>
>> /bin/sh ./libtool --tag=CXX --mode=link mpicxx -std=c++0x
>> -DMPICH_IGNORE_CXX_SEEK -O2
>> -L/home4/vogelbacher_f/extlib-scratch3-felsim/boost-trunk/ -o
>> integration integration-integration.o
>> -L/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/lib -ldunegrid
>> -L/home4/vogelbacher_f/svnwork/dune-trunk/dune-common/lib -ldunecommon
>> -L/home4/vogelbacher_f/extlib-scratch3-felsim/boost-trunk/
>> -L/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/lib -ldunegrid
>> -L/usr/lib -lgmpxx -lgmp
>> -L/home4/vogelbacher_f/extlib-scratch3-felsim/ALUGrid-1.22/lib
>> -lalugrid -pthread -L/opt/mpi/openmpi-1.3.3-gcc-4.3.1/lib -lmpi
>> -lopen-rte -lopen-pal -ldl -Wl,--export-dynamic -lnsl -lutil -lm -ldl
>> -lGL -L/usr/lib64 -lX11 -lm
>> -L/home4/vogelbacher_f/svnwork/dune-trunk/dune-common/lib -ldunecommon
>> -pthread -L/opt/mpi/openmpi-1.3.3-gcc-4.3.1/lib -lmpi -lopen-rte
>> -lopen-pal -ldl -Wl,--export-dynamic -lnsl -lutil -lm -ldl
>> -L/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/lib -ldunegrid
>> -L/home4/vogelbacher_f/svnwork/dune-trunk/dune-common/lib -ldunecommon
>> -L/home4/vogelbacher_f/svnwork/dune-trunk/dune-common/lib -ldunecommon
>> -L/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/lib -ldunegrid
>> -L/home4/vogelbacher_f/svnwork/dune-trunk/dune-common/lib -ldunecommon
>> -lm -pthread -L/opt/mpi/openmpi-1.3.3-gcc-4.3.1/lib -lmpi
>> -lopen-rte -lopen-pal -ldl -Wl,--export-dynamic -lnsl -lutil -lm -ldl -lm
>> mpicxx -std=c++0x -DMPICH_IGNORE_CXX_SEEK -O2 -o integration
>> integration-integration.o -pthread -Wl,--export-dynamic -pthread
>> -Wl,--export-dynamic -pthread -Wl,--export-dynamic
>> -L/home4/vogelbacher_f/extlib-scratch3-felsim/boost-trunk/
>> -L/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/lib
>> -L/home4/vogelbacher_f/svnwork/dune-trunk/dune-common/lib -L/usr/lib
>> -lgmpxx -lgmp
>> -L/home4/vogelbacher_f/extlib-scratch3-felsim/ALUGrid-1.22/lib
>> -L/home4/vogelbacher_f/extlib-scratch3-felsim/metis-4.0
>> -L/opt/mpi/openmpi-1.3.3-gcc-4.3.1/lib -lGL -L/usr/lib64 -lX11
>> /home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/lib/.libs/libdunegrid.a
>> /home4/vogelbacher_f/extlib-scratch3-felsim/ALUGrid-1.22/lib/libalugrid.a
>> -lmetis
>> /home4/vogelbacher_f/svnwork/dune-trunk/dune-common/lib/.libs/libdunecommon.a
>> /opt/mpi/openmpi-1.3.3-gcc-4.3.1/lib/libmpi_cxx.so
>> /opt/gcc/gcc-4.3.1/lib/../lib64/libstdc++.so
>> /opt/mpi/openmpi-1.3.3-gcc-4.3.1/lib/libmpi.so
>> /opt/mpi/openmpi-1.3.3-gcc-4.3.1/lib/libopen-rte.so
>> /opt/mpi/openmpi-1.3.3-gcc-4.3.1/lib/libopen-pal.so -lnsl -lutil -ldl -lm
>> if mpicxx -std=c++0x -DHAVE_CONFIG_H -I. -I. -I.
>> -I/home4/vogelbacher_f/svnwork/dune-trunk/dune-common
>> -I/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid
>> -I/home4/vogelbacher_f/svnwork/dune-trunk/dune-istl -I.
>> -DMPICH_IGNORE_CXX_SEEK -O2
>> -I/home4/vogelbacher_f/extlib-scratch3-felsim/boost-trunk/include
>> -I/opt/mpi/openmpi-1.3.3-gcc-4.3.1/include -pthread -DMPIPP_H
>> -DENABLE_MPI=1 -DMPICH_IGNORE_CXX_SEEK -O2
>> -I/home4/vogelbacher_f/extlib-scratch3-felsim/boost-trunk/include
>> -I/home4/vogelbacher_f/svnwork/dune-trunk/dune-common
>> -I/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid
>> -I/home4/vogelbacher_f/svnwork/dune-trunk/dune-istl
>> -I/opt/mpi/openmpi-1.3.3-gcc-4.3.1/include -pthread -DMPIPP_H
>> -DENABLE_MPI=1 -I/home4/vogelbacher_f/svnwork/dune-trunk/dune-common
>> -DGRIDDIM=2 -DWORLDDIM=2 -DYASPGRID
>> -I/opt/mpi/openmpi-1.3.3-gcc-4.3.1/include -pthread -DMPIPP_H
>> -DENABLE_MPI=1
>> -I/home4/vogelbacher_f/extlib-scratch3-felsim/ALUGrid-1.22/include
>> -I/home4/vogelbacher_f/extlib-scratch3-felsim/ALUGrid-1.22/include/serial
>> -I/home4/vogelbacher_f/extlib-scratch3-felsim/ALUGrid-1.22/include/duneinterface
>> -DENABLE_ALUGRID
>> -I/home4/vogelbacher_f/extlib-scratch3-felsim/ALUGrid-1.22/include/parallel
>> -I/usr/include -DENABLE_GMP=1
>> -I/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid
>> -I/home4/vogelbacher_f/svnwork/dune-trunk/dune-istl
>> -DMPICH_IGNORE_CXX_SEEK -O2 -MT othergrids-othergrids.o -MD -MP -MF
>> ".deps/othergrids-othergrids.Tpo" -c -o othergrids-othergrids.o `test
>> -f 'othergrids.cc' || echo './'`othergrids.cc; \
>> then mv -f ".deps/othergrids-othergrids.Tpo"
>> ".deps/othergrids-othergrids.Po"; else rm -f
>> ".deps/othergrids-othergrids.Tpo"; exit 1; fi
>> /home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/dune/grid/utility/structuredgridfactory.hh:
>> In constructor
>> ‘Dune::StructuredGridFactory<GridType>::MultiIndex::MultiIndex(const
>> std::array<unsigned int, Dune::StructuredGridFactory<GridType>::dim>&)
>> [with GridType = Dune::ALUCubeGrid<3, 3>]’:
>> /home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/dune/grid/utility/structuredgridfactory.hh:149:
>> instantiated from ‘static std::shared_ptr<_Tp>
>> Dune::StructuredGridFactory<GridType>::createCubeGrid(const
>> Dune::FieldVector<typename GridType::ctype,
>> Dune::StructuredGridFactory<GridType>::dimworld>&, const
>> Dune::FieldVector<typename GridType::ctype,
>> Dune::StructuredGridFactory<GridType>::dimworld>&, const
>> std::array<unsigned int, Dune::StructuredGridFactory<GridType>::dim>&)
>> [with GridType = Dune::ALUCubeGrid<3, 3>]’
>> unitcube_alugrid.hh:55: instantiated from here
>> /home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/dune/grid/utility/structuredgridfactory.hh:40:
>> error: ‘class Dune::StructuredGridFactory<Dune::ALUCubeGrid<3, 3>
>> >::MultiIndex’ has no member named ‘fill’
>> /home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/dune/grid/utility/structuredgridfactory.hh:
>> In constructor
>> ‘Dune::StructuredGridFactory<GridType>::MultiIndex::MultiIndex(const
>> std::array<unsigned int, Dune::StructuredGridFactory<GridType>::dim>&)
>> [with GridType = Dune::OneDGrid]’:
>> /home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/dune/grid/utility/structuredgridfactory.hh:149:
>> instantiated from ‘static std::shared_ptr<_Tp>
>> Dune::StructuredGridFactory<GridType>::createCubeGrid(const
>> Dune::FieldVector<typename GridType::ctype,
>> Dune::StructuredGridFactory<GridType>::dimworld>&, const
>> Dune::FieldVector<typename GridType::ctype,
>> Dune::StructuredGridFactory<GridType>::dimworld>&, const
>> std::array<unsigned int, Dune::StructuredGridFactory<GridType>::dim>&)
>> [with GridType = Dune::OneDGrid]’
>> unitcube.hh:27: instantiated from ‘UnitCube<T, variant>::UnitCube()
>> [with T = Dune::OneDGrid, int variant = 1]’
>> othergrids.cc:20: instantiated from here
>> /home4/vogelbacher_f/svnwork/dune-trunk/dune-grid/dune/grid/utility/structuredgridfactory.hh:40:
>> error: ‘class Dune::StructuredGridFactory<Dune::OneDGrid>::MultiIndex’
>> has no member named ‘fill’
>> make[2]: *** [othergrids-othergrids.o] Error 1
>> make[2]: Leaving directory
>> `/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid-howto'
>> make[1]: *** [all-recursive] Error 1
>> make[1]: Leaving directory
>> `/home4/vogelbacher_f/svnwork/dune-trunk/dune-grid-howto'
>> make: *** [all] Error 2
>> --- Failed to build dune-grid-howto ---
>> Terminating dunecontrol due to previous errors!
>>
>>
>
>
--
---------------------------
Paul Scherrer Institut
Florian Vogelbacher
WBCA/004
5232 Villigen PSI
Switzerland
Mail: Florian.Vogelbacher at psi.ch
Phone: +41 (0) 563105019
Web: www.psi.ch
---------------------------
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