[Dune] Error building module

Andreas Dedner a.s.dedner at warwick.ac.uk
Wed Mar 26 17:51:11 CET 2014


Hi Marco.
I don't really think anybody is going to be able to help you with that
amount of information - and I also don't see how details on the Kernel etc.
will help. The error is just to unspecific (segmentation fault always
are) and
without debugger and more information where the error occurs finding the
problem seems close to impossible to me. Especially since it is a problem of
one specific machine.
Andreas

On 26/03/14 17:43, Marco Cisternino wrote:
> Hi,
> I'm sorry for bothering you, but after the successful building of my
> project I get the following error during load balance using ALUGrid.
> I remark that I built my project on several machine with the same
> compiler(gcc 4.7.2) and the same version of OpenMPI(1.6.5) and I get
> this error only on one of them.
> I can't use any debugger on that machine and on the others I get no
> error, then, I can't realize what is going to happen.
> The machines differs in processor and linux kernel.
> If you need more information, please ask.
> Thanks again.
>
> Marco
>
> [sandrino:19367] *** Process received signal ***
> [sandrino:19367] Signal: Segmentation fault (11)
> [sandrino:19367] Signal code: Address not mapped (1)
> [sandrino:19367] Failing at address: 0x18
> [sandrino:19367] [ 0] /lib/x86_64-linux-gnu/libpthread.so.0(+0xf030)
> [0x7faaa9d37030]
> [sandrino:19367] [ 1]
> /opt/openmpi/openmpi-1.6.5-gcc/lib/libmpi.so.1(opal_memory_ptmalloc2_int_free+0x2db)
> [0x7faaac14325b]
> [sandrino:19367] [ 2]
> /opt/openmpi/openmpi-1.6.5-gcc/lib/libmpi.so.1(opal_memory_ptmalloc2_free+0xd3)
> [0x7faaac143643]
> [sandrino:19367] [ 3]
> ./multig(_ZNSt12_Destroy_auxILb0EE9__destroyIPSt6vectorIiSaIiEEEEvT_S6_+0x25)
> [0x646cf5]
> [sandrino:19367] [ 4]
> ./multig(_ZN12ALUGridSpace8identifyINS_6Gitter6vertexEEEvNS_14AccessIteratorIT_E6HandleERSt6vectorISt4pairISt4listIS6_SaIS6_EESB_ESaISC_EERKNS_13MpAccessLocalE+0x1977)
> [0x795f97]
> [sandrino:19367] [ 5]
> ./multig(_ZN12ALUGridSpace9GitterPll14MacroGitterPll14identificationERNS_13MpAccessLocalE+0x14e)
> [0x76233e]
> [sandrino:19367] [ 6]
> ./multig(_ZN12ALUGridSpace9GitterPll22notifyMacroGridChangesEv+0x59)
> [0x74aed9]
> [sandrino:19367] [ 7]
> ./multig(_ZN12ALUGridSpace13GitterDunePll15duneLoadBalanceERNS_13GatherScatterERNS_6Gitter20AdaptRestrictProlongE+0x3f7)
> [0x760f67]
> [sandrino:19367] [ 8]
> ./multig(_ZN4Dune19ALU3dGridCommHelperILNS_20ALU3dGridElementTypeE7EP19ompi_communicator_tE11loadBalanceINS_28ALUGridLoadBalanceDataHandleINS_9ALU3dGridILS1_7ES3_EE17PLBDataHandleColsIdNS_11ALUCubeGridILi3ELi3EEE28DeformationDiscreteFunction2INS_11FieldVectorIdLi3EEESB_NS_19PersistentContainerISB_17MyParametrizationISE_SE_EEENS_9MPIHelperENSF_ISB_iEEE9geomCellsISB_NS_12GeometryGridISB_SL_SaIvEEESL_NS_39LeafMultipleCodimMultipleGeomTypeMapperISB_NS_17MCMGElementLayoutEEESt6vectorINS_8GridViewINS_26DefaultLevelGridViewTraitsIKSB_LNS_21PartitionIteratorTypeE4EEEEESaISZ_EEST_INSU_INS_7GeoGrid14GridViewTraitsISZ_SL_SO_LSX_4EEEEESaIS15_EEEEdEEEEbRS8_RT_+0x1e8)
> [0x6a3db8]
> [sandrino:19367] [ 9]
> ./multig(_Z13myLoadBalanceIN4Dune11ALUCubeGridILi3ELi3EEE28DeformationDiscreteFunction2INS0_11FieldVectorIdLi3EEES2_NS0_19PersistentContainerIS2_17MyParametrizationIS5_S5_EEENS0_9MPIHelperENS6_IS2_iEEE9geomCellsIS2_NS0_12GeometryGridIS2_SC_SaIvEEESC_NS0_39LeafMultipleCodimMultipleGeomTypeMapperIS2_NS0_17MCMGElementLayoutEEESt6vectorINS0_8GridViewINS0_26DefaultLevelGridViewTraitsIKS2_LNS0_21PartitionIteratorTypeE4EEEEESaISQ_EESK_INSL_INS0_7GeoGrid14GridViewTraitsISQ_SC_SF_LSO_4EEEEESaISW_EEESA_SG_SJ_SK_IPNS0_40LevelMultipleCodimMultipleGeomTypeMapperIS2_NS0_14MCMGFaceLayoutEEESaIS13_EESK_IPNS10_IS2_SI_EESaIS17_EESK_ISK_IdSaIdEESaIS1B_EEEvRT_RT0_RT1_RT2_RT3_RT4_RT5_RT6_RT7_i+0x72)
> [0x6cbd02]
> [sandrino:19367] [10] ./multig(main+0x12d2) [0x611bd2]
> [sandrino:19367] [11]
> /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xfd) [0x7faaa99bcead]
> [sandrino:19367] [12] ./multig() [0x618a21]
> [sandrino:19367] *** End of error message ***
>
>
>
> --
> -----------------------------------------------
> Marco Cisternino, PhD
> OPTIMAD Engineering s.r.l.
> Via Giacinto Collegno 18
> 10143 Torino - Italy
> www.optimad.it
> marco.cisternino at optimad.it
> +39 011 19719782
> -----------------------------------------------
>
> ------------------------------------------------------------------------
> *Da: *dune-request at dune-project.org
> *A: *dune at dune-project.org
> *Inviato: *Mercoledì, 26 marzo 2014 12:00:01
> *Oggetto: *Dune Digest, Vol 105, Issue 16
>
> Send Dune mailing list submissions to
>         dune at dune-project.org
>
> To subscribe or unsubscribe via the World Wide Web, visit
>         http://lists.dune-project.org/mailman/listinfo/dune
> or, via email, send a message with subject or body 'help' to
>         dune-request at dune-project.org
>
> You can reach the person managing the list at
>         dune-owner at dune-project.org
>
> When replying, please edit your Subject line so it is more specific
> than "Re: Contents of Dune digest..."
>
> Today's Topics:
>
>    1. Re: Error building module (Marco Cisternino)
>    2. Re: Error building module (Marco Cisternino)
>    3. Re: Error building module (Christoph Gr?ninger)
>
> _______________________________________________
> Dune mailing list
> Dune at dune-project.org
> http://lists.dune-project.org/mailman/listinfo/dune
>
>
>
> _______________________________________________
> Dune mailing list
> Dune at dune-project.org
> http://lists.dune-project.org/mailman/listinfo/dune

-------------- next part --------------
An HTML attachment was scrubbed...
URL: <https://lists.dune-project.org/pipermail/dune/attachments/20140326/6f6c7da8/attachment-0001.html>


More information about the Dune mailing list