[Dune] dune installation problem

Wed Jun 3 04:57:21 CEST 2015

Dear dune,

I have faced with some serious troubles with upgrading my mpi installation.
After the new released mpi (v1.8) is installed, I could never compile the
dune package. I checked very many solutions even going to previous versions
of dune. But, none of them worked. I wonder if you can help me with the
problem.

Surprisingly, after dune-common is compiled, dune-geometry returns an error
that there is no dune-common module in the domain. The following is the
output in the terminal. I have also attached the log files for the
dune-common and dune-geometry.

I will be very thankful if you help me on this matter,

Regards,
Arya

[cfel-kaert-lx1] ~/workspace $ sudo ./dune-common/bin/dunecontrol
--opts=cyrus.opts all
--- going to build dune-common dune-geometry dune-grid cyrus  ---
--- calling all for dune-common ---
--- calling autogen for dune-common ---
Skipping dune-autogen
--- calling configure for dune-common ---
----- using default flags $CONFIGURE_FLAGS from /afs/
desy.de/user/a/afallahi/workspace/cyrus.opts -----
./configure MPICC='/afs/desy.de/user/a/afallahi/extlib/openmpi-1.8/bin/mpicc'
CC=gcc-4.7 CFLAGS='-O3 -g0 --no-strict-aliasing' CPP=cpp-4.7 CPPFLAGS='-O3
-g0 --no-strict-aliasing' CXX=g++-4.7 CXXFLAGS='-O3 -g0
--no-strict-aliasing' F77=gfortran-4.7 FFLAGS='-O3 -g0
--no-strict-aliasing' FC=gfortran-4.7 #FCFLAGS='-O3 -g0
--no-strict-aliasing' --enable-parallel --prefix='/afs/
desy.de/user/a/afallahi/extlib/cyrus' --with-metis='/afs/
desy.de/user/a/afallahi/extlib/metis-5.1'  ACLOCAL_AMFLAGS="-I . -I
m4"user/a/afallahi/extlib/alugrid-1.52'
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking how to create a pax tar archive... gnutar
checking whether make supports nested variables... yes
checking how to create a pax tar archive... (cached) gnutar
checking for inkscape... inkscape
checking for doxygen... doxygen
checking for latex... latex
checking for bibtex... bibtex
checking for dvipdf... dvipdf
checking for dvips... dvips
checking for wml... no
checking for dot... dot
checking for perl... perl
checking for convert... convert
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for style of include used by make... GNU
checking for gcc... gcc-4.7
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc-4.7 accepts -g... yes
checking for gcc-4.7 option to accept ISO C89... none needed
checking dependency style of gcc-4.7... gcc3
checking dependency style of gcc-4.7... (cached) gcc3
checking how to run the C preprocessor... cpp-4.7
checking whether we are using the GNU C++ compiler... yes
checking whether g++-4.7 accepts -g... yes
checking dependency style of g++-4.7... gcc3
checking dependency style of g++-4.7... (cached) gcc3
checking how to run the C++ preprocessor... g++-4.7 -E
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether gfortran-4.7 accepts -g... yes
checking whether we are using the GNU Fortran compiler... yes
checking whether gfortran-4.7 accepts -g... yes
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking how to print strings... printf
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for fgrep... /bin/grep -F
checking for ld used by gcc-4.7... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 98304
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking how to convert x86_64-unknown-linux-gnu file names to
x86_64-unknown-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-unknown-linux-gnu file names to toolchain
format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for ar... ar
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc-4.7 object... ok
checking for sysroot... no
checking for mt... no
checking if : is a manifest tool... no
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc-4.7 supports -fno-rtti -fno-exceptions... no
checking for gcc-4.7 option to produce PIC... -fPIC -DPIC
checking if gcc-4.7 PIC flag -fPIC -DPIC works... yes
checking if gcc-4.7 static flag -static works... yes
checking if gcc-4.7 supports -c -o file.o... yes
checking if gcc-4.7 supports -c -o file.o... (cached) yes
checking whether the gcc-4.7 linker (/usr/bin/ld -m elf_x86_64) supports
shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... no
checking whether to build static libraries... yes
checking how to run the C++ preprocessor... g++-4.7 -E
checking for ld used by g++-4.7... /usr/bin/ld -m elf_x86_64
checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes
checking whether the g++-4.7 linker (/usr/bin/ld -m elf_x86_64) supports
shared libraries... yes
checking for g++-4.7 option to produce PIC... -fPIC -DPIC
checking if g++-4.7 PIC flag -fPIC -DPIC works... yes
checking if g++-4.7 static flag -static works... yes
checking if g++-4.7 supports -c -o file.o... yes
checking if g++-4.7 supports -c -o file.o... (cached) yes
checking whether the g++-4.7 linker (/usr/bin/ld -m elf_x86_64) supports
shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... no
checking whether to build static libraries... yes
checking for gfortran-4.7 option to produce PIC... -fPIC
checking if gfortran-4.7 PIC flag -fPIC works... yes
checking if gfortran-4.7 static flag -static works... yes
checking if gfortran-4.7 supports -c -o file.o... yes
checking if gfortran-4.7 supports -c -o file.o... (cached) yes
checking whether the gfortran-4.7 linker (/usr/bin/ld -m elf_x86_64)
supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... no
checking whether to build static libraries... yes
checking for gfortran-4.7 option to produce PIC... -fPIC
checking if gfortran-4.7 PIC flag -fPIC works... yes
checking if gfortran-4.7 static flag -static works... yes
checking if gfortran-4.7 supports -c -o file.o... yes
checking if gfortran-4.7 supports -c -o file.o... (cached) yes
checking whether the gfortran-4.7 linker (/usr/bin/ld -m elf_x86_64)
supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for ranlib... (cached) ranlib
checking how to get verbose linking output from gfortran-4.7... -v
checking for Fortran 77 libraries of gfortran-4.7...  -L/afs/
desy.de/user/a/afallahi/extlib/gcc-4.7/lib/gcc/x86_64-linux-gnu/4.7.2
-L/afs/
desy.de/user/a/afallahi/extlib/gcc-4.7/lib/gcc/x86_64-linux-gnu/4.7.2/../../../../lib64
-L/lib/../lib64 -L/usr/lib/../lib64 -L/afs/
desy.de/user/a/afallahi/extlib/gcc-4.7/lib/gcc/x86_64-linux-gnu/4.7.2/../../..
-lgfortran -lm -lquadmath
checking for dummy main to link with Fortran 77 libraries... none
checking for Fortran 77 name-mangling scheme... lower case, underscore, no
extra underscore
checking for sgemm_... no
checking for ATL_xerbla in -latlas... no
checking for sgemm_ in -lblas... yes
checking for dgemm_ in -ldgemm... no
checking for sgemm_ in -lcxml... no
checking for sgemm_ in -ldxml... no
checking for sgemm_ in -lscs... no
checking for sgemm_ in -lcomplib.sgimath... no
checking for sgemm_ in -lblas... (cached) yes
checking for sgemm_ in -lessl... no
checking for sgemm_ in -lblas... (cached) yes
checking for cheev_... no
checking for cheev_ in -llapack... yes
checking how to get verbose linking output from gfortran-4.7... -v
checking for Fortran libraries of gfortran-4.7...  -L/afs/
desy.de/user/a/afallahi/extlib/gcc-4.7/lib/gcc/x86_64-linux-gnu/4.7.2
-L/afs/
desy.de/user/a/afallahi/extlib/gcc-4.7/lib/gcc/x86_64-linux-gnu/4.7.2/../../../../lib64
-L/lib/../lib64 -L/usr/lib/../lib64 -L/afs/
desy.de/user/a/afallahi/extlib/gcc-4.7/lib/gcc/x86_64-linux-gnu/4.7.2/../../..
-lgfortran -lm -lquadmath
checking for dummy main to link with Fortran libraries... none
checking for Fortran name-mangling scheme... lower case, underscore, no
extra underscore
checking whether compiler is officially supported by DUNE... yes
checking whether g++ accepts -std=c++0x... yes
checking whether static_assert is supported... yes
checking whether nullptr is supported... yes
checking type_traits usability... yes
checking type_traits presence... yes
checking for type_traits... yes
checking tr1/type_traits usability... yes
checking tr1/type_traits presence... yes
checking for tr1/type_traits... yes
checking tuple usability... yes
checking tuple presence... yes
checking for tuple... yes
checking tr1/tuple usability... yes
checking tr1/tuple presence... yes
checking for tr1/tuple... yes
checking whether <array> C++0x is supported... yes
checking memory usability... yes
checking memory presence... yes
checking for memory... yes
checking tr1/memory usability... yes
checking tr1/memory presence... yes
checking for tr1/memory... yes
checking boost/shared_ptr.hpp usability... no
checking boost/shared_ptr.hpp presence... no
checking for boost/shared_ptr.hpp... no
checking the location of shared_ptr header file...
checking whether SHARED_PTR_NAMESPACE (std) provides make_shared... yes
checking whether compiling C++ code works... yes
checking whether linking C++ objects works... yes
checking for __attribute__((deprecated))... yes
checking for __attribute__((deprecated("message")))... yes
checking for __attribute__((unused))... yes
checking rpc/rpc.h usability... yes
checking rpc/rpc.h presence... yes
checking for rpc/rpc.h... yes
checking for an ANSI C-conforming const... yes
checking for inline... inline
checking for size_t... yes
checking whether struct tm is in sys/time.h or time.h... time.h
checking for stdlib.h... (cached) yes
checking for GNU libc compatible malloc... yes
checking for GMP... configure: searching for GMP in /usr...
checking gmpxx.h usability... yes
checking gmpxx.h presence... yes
checking for gmpxx.h... yes
checking for __gmpz_abs in -L/usr/lib -lgmp... yes
checking for __gmpz_abs in -L/usr/lib -lgmpxx... yes
/usr
checking malloc.h usability... yes
checking malloc.h presence... yes
checking for malloc.h... yes
checking for string.h... (cached) yes
checking for pow in -lm... yes
checking for sqrt... yes
checking for strchr... yes
configure: creating ./config.status
config.status: creating Makefile
config.status: creating lib/Makefile
config.status: creating bin/Makefile
config.status: creating dune/Makefile
config.status: creating dune/common/Makefile
config.status: creating dune/common/test/Makefile
config.status: creating dune/common/parallel/Makefile
config.status: creating dune/common/parallel/test/Makefile
config.status: creating doc/Makefile
config.status: creating doc/doxygen/Makefile
config.status: creating doc/doxygen/Doxyfile
config.status: creating doc/buildsystem/Makefile
config.status: creating m4/Makefile
config.status: creating am/Makefile
config.status: creating bin/check-log-store
config.status: creating dune-common.pc
config.status: creating config.h
config.status: config.h is unchanged
config.status: executing depfiles commands
config.status: executing libtool commands

Found the following Dune-components:

----------------------------------------

GMP.....................: yes
MPI.....................: no

----------------------------------------

See ./configure --help and config.log for reasons why a component wasn't
found

--- calling make for dune-common ---
make
make  all-recursive
make[1]: Entering directory `/afs/
desy.de/user/a/afallahi/workspace/dune-common'
Making all in dune
make[2]: Entering directory `/afs/
desy.de/user/a/afallahi/workspace/dune-common/dune'
Making all in common
make[3]: Entering directory `/afs/
desy.de/user/a/afallahi/workspace/dune-common/dune/common'
Making all in .
make[4]: Entering directory `/afs/
desy.de/user/a/afallahi/workspace/dune-common/dune/common'
make[4]: Nothing to be done for `all-am'.
make[4]: Leaving directory `/afs/
desy.de/user/a/afallahi/workspace/dune-common/dune/common'
Making all in test
make[4]: Entering directory `/afs/
desy.de/user/a/afallahi/workspace/dune-common/dune/common/test'
make[4]: Nothing to be done for `all'.
make[4]: Leaving directory `/afs/
desy.de/user/a/afallahi/workspace/dune-common/dune/common/test'
Making all in parallel
make[4]: Entering directory `/afs/
desy.de/user/a/afallahi/workspace/dune-common/dune/common/parallel'
Making all in test
make[5]: Entering directory `/afs/
desy.de/user/a/afallahi/workspace/dune-common/dune/common/parallel/test'
make[5]: Nothing to be done for `all'.
make[5]: Leaving directory `/afs/
desy.de/user/a/afallahi/workspace/dune-common/dune/common/parallel/test'
make[5]: Entering directory `/afs/
desy.de/user/a/afallahi/workspace/dune-common/dune/common/parallel'
make[5]: Nothing to be done for `all-am'.
make[5]: Leaving directory `/afs/
desy.de/user/a/afallahi/workspace/dune-common/dune/common/parallel'
make[4]: Leaving directory `/afs/
desy.de/user/a/afallahi/workspace/dune-common/dune/common/parallel'
make[3]: Leaving directory `/afs/
desy.de/user/a/afallahi/workspace/dune-common/dune/common'
make[3]: Entering directory `/afs/
desy.de/user/a/afallahi/workspace/dune-common/dune'
make[3]: Nothing to be done for `all-am'.
make[3]: Leaving directory `/afs/
desy.de/user/a/afallahi/workspace/dune-common/dune'
make[2]: Leaving directory `/afs/
desy.de/user/a/afallahi/workspace/dune-common/dune'
Making all in lib
make[2]: Entering directory `/afs/
desy.de/user/a/afallahi/workspace/dune-common/lib'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/afs/
desy.de/user/a/afallahi/workspace/dune-common/lib'
Making all in doc
make[2]: Entering directory `/afs/
desy.de/user/a/afallahi/workspace/dune-common/doc'
Making all in doxygen
make[3]: Entering directory `/afs/
desy.de/user/a/afallahi/workspace/dune-common/doc/doxygen'
make[3]: Nothing to be done for `all'.
make[3]: Leaving directory `/afs/
desy.de/user/a/afallahi/workspace/dune-common/doc/doxygen'
Making all in buildsystem
make[3]: Entering directory `/afs/
desy.de/user/a/afallahi/workspace/dune-common/doc/buildsystem'
make[3]: Nothing to be done for `all'.
make[3]: Leaving directory `/afs/
desy.de/user/a/afallahi/workspace/dune-common/doc/buildsystem'
make[3]: Entering directory `/afs/
desy.de/user/a/afallahi/workspace/dune-common/doc'
make[3]: Nothing to be done for `all-am'.
make[3]: Leaving directory `/afs/
desy.de/user/a/afallahi/workspace/dune-common/doc'
make[2]: Leaving directory `/afs/
desy.de/user/a/afallahi/workspace/dune-common/doc'
Making all in bin
make[2]: Entering directory `/afs/
desy.de/user/a/afallahi/workspace/dune-common/bin'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/afs/
desy.de/user/a/afallahi/workspace/dune-common/bin'
Making all in m4
make[2]: Entering directory `/afs/
desy.de/user/a/afallahi/workspace/dune-common/m4'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/afs/
desy.de/user/a/afallahi/workspace/dune-common/m4'
Making all in am
make[2]: Entering directory `/afs/
desy.de/user/a/afallahi/workspace/dune-common/am'
make[3]: Entering directory `/afs/
desy.de/user/a/afallahi/workspace/dune-common/am'
make[3]: Leaving directory `/afs/
desy.de/user/a/afallahi/workspace/dune-common/am'
make[3]: Entering directory `/afs/
desy.de/user/a/afallahi/workspace/dune-common/am'
make[4]: Entering directory `/afs/
desy.de/user/a/afallahi/workspace/dune-common/am'
make[4]: Leaving directory `/afs/
desy.de/user/a/afallahi/workspace/dune-common/am'
make[3]: Leaving directory `/afs/
desy.de/user/a/afallahi/workspace/dune-common/am'
make[2]: Leaving directory `/afs/
desy.de/user/a/afallahi/workspace/dune-common/am'
make[2]: Entering directory `/afs/
desy.de/user/a/afallahi/workspace/dune-common'
make[2]: Leaving directory `/afs/
desy.de/user/a/afallahi/workspace/dune-common'
make[1]: Leaving directory `/afs/
desy.de/user/a/afallahi/workspace/dune-common'
--- dune-common done ---
--- calling all for dune-geometry ---
--- calling autogen for dune-geometry ---
Skipping dune-autogen
--- calling configure for dune-geometry ---
----- using default flags $CONFIGURE_FLAGS from /afs/
desy.de/user/a/afallahi/workspace/cyrus.opts -----
./configure MPICC='/afs/desy.de/user/a/afallahi/extlib/openmpi-1.8/bin/mpicc'
CC=gcc-4.7 CFLAGS='-O3 -g0 --no-strict-aliasing' CPP=cpp-4.7 CPPFLAGS='-O3
-g0 --no-strict-aliasing' CXX=g++-4.7 CXXFLAGS='-O3 -g0
--no-strict-aliasing' F77=gfortran-4.7 FFLAGS='-O3 -g0
--no-strict-aliasing' FC=gfortran-4.7 #FCFLAGS='-O3 -g0
--no-strict-aliasing' --enable-parallel --prefix='/afs/
desy.de/user/a/afallahi/extlib/cyrus' --with-metis='/afs/
desy.de/user/a/afallahi/extlib/metis-5.1'  "--with-dune-common=/afs/
desy.de/user/a/afallahi/workspace/dune-common/" ACLOCAL_AMFLAGS="-I . -I m4
-I /afs/desy.de/user/a/afallahi/workspace/dune-common/m4"
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking how to create a pax tar archive... gnutar
checking whether make supports nested variables... yes
checking how to create a pax tar archive... (cached) gnutar
checking for inkscape... inkscape
checking for doxygen... doxygen
checking for latex... latex
checking for bibtex... bibtex
checking for dvipdf... dvipdf
checking for dvips... dvips
checking for wml... no
checking for dot... dot
checking for perl... perl
checking for convert... convert
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for style of include used by make... GNU
checking for gcc... gcc-4.7
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc-4.7 accepts -g... yes
checking for gcc-4.7 option to accept ISO C89... none needed
checking dependency style of gcc-4.7... gcc3
checking dependency style of gcc-4.7... (cached) gcc3
checking how to run the C preprocessor... cpp-4.7
checking whether we are using the GNU C++ compiler... yes
checking whether g++-4.7 accepts -g... yes
checking dependency style of g++-4.7... gcc3
checking dependency style of g++-4.7... (cached) gcc3
checking how to run the C++ preprocessor... g++-4.7 -E
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether gfortran-4.7 accepts -g... yes
checking whether we are using the GNU Fortran compiler... yes
checking whether gfortran-4.7 accepts -g... yes
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking how to print strings... printf
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for fgrep... /bin/grep -F
checking for ld used by gcc-4.7... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 98304
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking how to convert x86_64-unknown-linux-gnu file names to
x86_64-unknown-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-unknown-linux-gnu file names to toolchain
format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for ar... ar
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc-4.7 object... ok
checking for sysroot... no
checking for mt... no
checking if : is a manifest tool... no
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc-4.7 supports -fno-rtti -fno-exceptions... no
checking for gcc-4.7 option to produce PIC... -fPIC -DPIC
checking if gcc-4.7 PIC flag -fPIC -DPIC works... yes
checking if gcc-4.7 static flag -static works... yes
checking if gcc-4.7 supports -c -o file.o... yes
checking if gcc-4.7 supports -c -o file.o... (cached) yes
checking whether the gcc-4.7 linker (/usr/bin/ld -m elf_x86_64) supports
shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... no
checking whether to build static libraries... yes
checking how to run the C++ preprocessor... g++-4.7 -E
checking for ld used by g++-4.7... /usr/bin/ld -m elf_x86_64
checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes
checking whether the g++-4.7 linker (/usr/bin/ld -m elf_x86_64) supports
shared libraries... yes
checking for g++-4.7 option to produce PIC... -fPIC -DPIC
checking if g++-4.7 PIC flag -fPIC -DPIC works... yes
checking if g++-4.7 static flag -static works... yes
checking if g++-4.7 supports -c -o file.o... yes
checking if g++-4.7 supports -c -o file.o... (cached) yes
checking whether the g++-4.7 linker (/usr/bin/ld -m elf_x86_64) supports
shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... no
checking whether to build static libraries... yes
checking for gfortran-4.7 option to produce PIC... -fPIC
checking if gfortran-4.7 PIC flag -fPIC works... yes
checking if gfortran-4.7 static flag -static works... yes
checking if gfortran-4.7 supports -c -o file.o... yes
checking if gfortran-4.7 supports -c -o file.o... (cached) yes
checking whether the gfortran-4.7 linker (/usr/bin/ld -m elf_x86_64)
supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... no
checking whether to build static libraries... yes
checking for gfortran-4.7 option to produce PIC... -fPIC
checking if gfortran-4.7 PIC flag -fPIC works... yes
checking if gfortran-4.7 static flag -static works... yes
checking if gfortran-4.7 supports -c -o file.o... yes
checking if gfortran-4.7 supports -c -o file.o... (cached) yes
checking whether the gfortran-4.7 linker (/usr/bin/ld -m elf_x86_64)
supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for ranlib... (cached) ranlib
checking how to get verbose linking output from gfortran-4.7... -v
checking for Fortran 77 libraries of gfortran-4.7...  -L/afs/
desy.de/user/a/afallahi/extlib/gcc-4.7/lib/gcc/x86_64-linux-gnu/4.7.2
-L/afs/
desy.de/user/a/afallahi/extlib/gcc-4.7/lib/gcc/x86_64-linux-gnu/4.7.2/../../../../lib64
-L/lib/../lib64 -L/usr/lib/../lib64 -L/afs/
desy.de/user/a/afallahi/extlib/gcc-4.7/lib/gcc/x86_64-linux-gnu/4.7.2/../../..
-lgfortran -lm -lquadmath
checking for dummy main to link with Fortran 77 libraries... none
checking for Fortran 77 name-mangling scheme... lower case, underscore, no
extra underscore
checking for sgemm_... no
checking for ATL_xerbla in -latlas... no
checking for sgemm_ in -lblas... yes
checking for dgemm_ in -ldgemm... no
checking for sgemm_ in -lcxml... no
checking for sgemm_ in -ldxml... no
checking for sgemm_ in -lscs... no
checking for sgemm_ in -lcomplib.sgimath... no
checking for sgemm_ in -lblas... (cached) yes
checking for sgemm_ in -lessl... no
checking for sgemm_ in -lblas... (cached) yes
checking for cheev_... no
checking for cheev_ in -llapack... yes
checking how to get verbose linking output from gfortran-4.7... -v
checking for Fortran libraries of gfortran-4.7...  -L/afs/
desy.de/user/a/afallahi/extlib/gcc-4.7/lib/gcc/x86_64-linux-gnu/4.7.2
-L/afs/
desy.de/user/a/afallahi/extlib/gcc-4.7/lib/gcc/x86_64-linux-gnu/4.7.2/../../../../lib64
-L/lib/../lib64 -L/usr/lib/../lib64 -L/afs/
desy.de/user/a/afallahi/extlib/gcc-4.7/lib/gcc/x86_64-linux-gnu/4.7.2/../../..
-lgfortran -lm -lquadmath
checking for dummy main to link with Fortran libraries... none
checking for Fortran name-mangling scheme... lower case, underscore, no
extra underscore
checking whether compiler is officially supported by DUNE... yes
checking whether g++ accepts -std=c++0x... yes
checking whether static_assert is supported... yes
checking whether nullptr is supported... yes
checking type_traits usability... yes
checking type_traits presence... yes
checking for type_traits... yes
checking tr1/type_traits usability... yes
checking tr1/type_traits presence... yes
checking for tr1/type_traits... yes
checking tuple usability... yes
checking tuple presence... yes
checking for tuple... yes
checking tr1/tuple usability... yes
checking tr1/tuple presence... yes
checking for tr1/tuple... yes
checking whether <array> C++0x is supported... yes
checking memory usability... yes
checking memory presence... yes
checking for memory... yes
checking tr1/memory usability... yes
checking tr1/memory presence... yes
checking for tr1/memory... yes
checking boost/shared_ptr.hpp usability... no
checking boost/shared_ptr.hpp presence... no
checking for boost/shared_ptr.hpp... no
checking the location of shared_ptr header file...
checking whether SHARED_PTR_NAMESPACE (std) provides make_shared... yes
checking whether compiling C++ code works... yes
checking whether linking C++ objects works... yes
checking for __attribute__((deprecated))... yes
checking for __attribute__((deprecated("message")))... yes
checking for __attribute__((unused))... yes
checking rpc/rpc.h usability... yes
checking rpc/rpc.h presence... yes
checking for rpc/rpc.h... yes
checking for an ANSI C-conforming const... yes
checking for inline... inline
checking for size_t... yes
checking whether struct tm is in sys/time.h or time.h... time.h
checking for stdlib.h... (cached) yes
checking for GNU libc compatible malloc... yes
checking for GMP... configure: searching for GMP in /usr...
checking gmpxx.h usability... yes
checking gmpxx.h presence... yes
checking for gmpxx.h... yes
checking for __gmpz_abs in -L/usr/lib -lgmp... yes
checking for __gmpz_abs in -L/usr/lib -lgmpxx... yes
/usr
checking malloc.h usability... yes
checking malloc.h presence... yes
checking for malloc.h... yes
checking for string.h... (cached) yes
checking for pow in -lm... yes
checking for sqrt... yes
checking for strchr... yes
configure: creating ./config.lt
config.lt: creating libtool
checking for dune-common installation or source tree... not found
checking dune/common/stdstreams.hh usability... no
checking dune/common/stdstreams.hh presence... no
checking for dune/common/stdstreams.hh... no
checking for alglib4dune (>=1.0) via pkgconfig... no
configure: error: could not find required module dune-common
--- Failed to build dune-geometry ---
Terminating dunecontrol due to previous errors!
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