[Dune] CMake crash

Tue May 12 11:20:58 CEST 2015

Hi Christoph,

So I can confirm this bug. There is a difference on whether the file is called

myproject/cmake/modules/FindBoost.cmake

or

myproject/cmake/modules/FindMyBoost.cmake

I attach dunecontrol-log for both cases, and all cmake files involved

Please tell me if you need more info

Regards,
Aleksejs

On 12/05/15 10:57, Christoph Grüninger wrote:
> Hi Alexsejs,
> there are no name clashes. CMake implements rules where to look for
> files. When the file is found in the same directory, is taken from
> there. Then there is a search path (we add dune-common to that) and
> finally /usr/share/cmake/Modules/.
> 
> If this is broken, we should file a bug. Can you share more details?
> 
> Bye
> Christoph
> 
> 
> 
> _______________________________________________
> Dune mailing list
> Dune at dune-project.org
> http://lists.dune-project.org/mailman/listinfo/dune
> 
-------------- next part --------------
A non-text attachment was scrubbed...
Name: FindMyBoost.cmake
Type: text/x-cmake
Size: 755 bytes
Desc: not available
URL: <https://lists.dune-project.org/pipermail/dune/attachments/20150512/fabaff03/attachment.bin>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: HadesMacros.cmake
Type: text/x-cmake
Size: 132 bytes
Desc: not available
URL: <https://lists.dune-project.org/pipermail/dune/attachments/20150512/fabaff03/attachment-0001.bin>
-------------- next part --------------
## set(modules "VulcainMacros.cmake")

set(modules
  AddBoostFlags.cmake
  AddSUPERLUDISTFlags.cmake
  FindMyBoost.cmake
  FindSUPERLUDIST.cmake
)

install(FILES ${modules} DESTINATION ${DUNE_INSTALL_MODULEDIR})
-------------- next part --------------
#################################################################
## HADES3D. All rights reserved for and by Benedikt Oswald, 2002-
#################################################################
# set up project
project("hades" C CXX)

#circumvent not building docs
set(BUILD_DOCS 1)

# general stuff
cmake_minimum_required(VERSION 2.8.6)

# guess build tree of dune-common
if(NOT (dune-common_DIR OR dune-common_ROOT OR
        "${CMAKE_PREFIX_PATH}" MATCHES ".*dune-common.*"))
    string(REPLACE  ${CMAKE_PROJECT_NAME} dune-common dune-common_DIR
      ${PROJECT_BINARY_DIR})

endif()

#find dune-common and set the module path
find_package(dune-common REQUIRED)

list(APPEND CMAKE_MODULE_PATH ${dune-common_MODULE_PATH} "${PROJECT_SOURCE_DIR}/cmake/modules")

#include the dune macros and hades macros
include(DuneMacros)
include(HadesMacros)

# start a dune project with information from dune.module
dune_project()

# make sure our own modules are found
#set(CMAKE_MODULE_PATH ${CMAKE_MODULE_PATH} "${PROJECT_SOURCE_DIR}/cmake/modules")
add_subdirectory("cmake/modules")

########################################################
# retrieve HADES repository information through querying
########################################################
execute_process (
    COMMAND git show -s --format=%H
    WORKING_DIRECTORY ${PROJECT_SOURCE_DIR}
    OUTPUT_VARIABLE HADES_REPOSITORY_VERSION
    OUTPUT_STRIP_TRAILING_WHITESPACE
)

execute_process (
    COMMAND git show -s --format=%cn
    WORKING_DIRECTORY ${PROJECT_SOURCE_DIR}
    OUTPUT_VARIABLE HADES_REPOSITORY_COMMITTER
    OUTPUT_STRIP_TRAILING_WHITESPACE
)

execute_process (
    COMMAND git show -s --format=%cd
    WORKING_DIRECTORY ${PROJECT_SOURCE_DIR}
    OUTPUT_VARIABLE HADES_REPOSITORY_COMMIT_DATE
    OUTPUT_STRIP_TRAILING_WHITESPACE
)

execute_process (
    COMMAND git show -s --format=%ce
    WORKING_DIRECTORY ${PROJECT_SOURCE_DIR}
    OUTPUT_VARIABLE HADES_REPOSITORY_COMMITTER_EMAIL
    OUTPUT_STRIP_TRAILING_WHITESPACE
)

#########################################
## define header to pass version settings
#########################################
configure_file (
    "${PROJECT_SOURCE_DIR}/version/version.hh.in"
    "${PROJECT_BINARY_DIR}/version/version.hh"
)

###########################################################################
## add global paths that are searched by the linker 
###########################################################################
link_directories(${PROJECT_BINARY_DIR}/hadesgeo/parser)
link_directories(${PROJECT_BINARY_DIR}/hadesgeo/exporter)

#########################################
## define header to pass version settings
#########################################
configure_file (
    "${PROJECT_SOURCE_DIR}/stdincl/version.hh.in"
    "${PROJECT_BINARY_DIR}/stdincl/version.hh"
)

###########################################################################
## add subdirectories of the HADES3D solve family
###########################################################################

# add directory that contains the core solver executables
add_subdirectory("hades")
add_subdirectory("hadesx")
add_subdirectory("hadesgeo")

# finalize the dune project, e.g. generating config.h etc.
finalize_dune_project(GENERATE_CONFIG_H_CMAKE)
-------------- next part --------------
----- using default flags $CONFIGURE_FLAGS from /home/fomins/gitwork/hades-github-lspr-ag/af.debian7.lsprag.cmakebuild.minimalistic-hades-2.opts -----
--- going to build dune-common dune-geometry dune-grid dune-istl dune-localfunctions dune-alugrid dune-curvilineargeometry dune-curvilineargrid hades  ---
--- calling all for dune-common ---
--- calling vcsetup for dune-common ---
--- calling autogen for dune-common ---
Skipping dune-autogen because of CMake
--- calling configure for dune-common ---
----- using default flags $CONFIGURE_FLAGS from /home/fomins/gitwork/hades-github-lspr-ag/af.debian7.lsprag.cmakebuild.minimalistic-hades-2.opts -----
 CXX=mpicxx CC=mpicc cmake -DCMAKE_MODULE_PATH=""  -DHADES_FLAGS="-DHAVE_DEBUG" -DCMAKE_CXXFLAGS="-Wall -pedantic -O0 -g3 -I/opt/extlib/parmetis/4.0.3/openmpi/1.8.1/gcc/4.9.0 -I/opt/extlib/metis/5.1.0/gcc/4.9.0/include -I/opt/extlib/superludist/3.3/openmpi/1.8.1/gcc/4.9.0/SRC " -DMETIS_ROOT="/opt/extlib/metis/5.1.0/gcc/4.9.0" -DPARMETIS_ROOT="/opt/extlib/parmetis/4.0.3/openmpi/1.8.1/gcc/4.9.0" -DSUPERLUDIST_ROOT="/opt/extlib/superludist/3.3/openmpi/1.8.1/gcc/4.9.0" -DCMAKE_LIBRARY_PATH:RELEASE="/opt/extlib/boost/1.58.0/gcc/4.9.0/lib" -DCMAKE_LIBRARY_PATH:DEBUG="/opt/extlib/boost/1.58.0/gcc/4.9.0/lib" -DCMAKE_STANDARD_LIBRARIES:RELEASE="-lboost_system -lprogram_options" -DCMAKE_STANDARD_LIBRARIES:DEBUG="-lboost_system -lprogram_options" -DCMAKE_PREFIX_PATH="/opt/extlib/boost/1.58.0/gcc/4.9.0;/opt/extlib/parmetis/4.0.3/openmpi/1.8.1/gcc/4.9.0;/opt/extlib/metis/5.1.0/gcc/4.9.0;/opt/extlib/superludist/3.3/openmpi/1.8.1/gcc/4.9.0;/opt/extlib/superludist/3.3/openmpi/1.8.1/gcc/4.9.0/SRC;/opt/extlib/superludist/3.3/openmpi/1.8.1/gcc/4.9.0/lib;" -DDUNE_GRID_EXPERIMENTAL_GRID_EXTENSIONS:BOOL=TRUE -DCMAKE_SHARED_LINKER_FLAGS="-lzlib" "/home/fomins/gitwork/hades-github-lspr-ag/dune-common"
-- I could not find the latex2html command.
-- Could NOT find Doxygen (missing:  DOXYGEN_EXECUTABLE) 
-- Performing tests specific to dune-common from file /home/fomins/gitwork/hades-github-lspr-ag/dune-common/cmake/modules/DuneCommonMacros.cmake.
-- A library with BLAS API found.
-- A library with LAPACK API found.
-- Could NOT find GMP (missing:  GMP_INCLUDE_DIR GMP_LIB GMPXX_LIB GMP_HEADER_WORKS GMPXX_LIB_WORKS) 
-- Using scripts from /home/fomins/gitwork/hades-github-lspr-ag/dune-common/cmake/scripts for creating doxygen stuff.
-- Not adding custom target for config.h generation
-- 
-- The following OPTIONAL packages have been found:

 * PkgConfig
 * BLAS
 * LAPACK
 * Inkscape
 * MPI
 * Threads

-- The following OPTIONAL packages have not been found:

 * ThreadsCMake31
 * LATEX
 * UnixCommands
 * Doxygen
 * GMP

-- Configuring done
-- Generating done
-- Build files have been written to: /home/fomins/gitwork/hades-github-lspr-ag/dune-common/build-cmake
--- calling make for dune-common ---
build directory: build-cmake
cmake --build . -- 
[ 75%] Built target dunecommon
[ 75%] Built target indexset
[ 83%] Built target poosc08
[100%] Built target poosc08_test
--- dune-common done ---
--- calling all for dune-geometry ---
--- calling vcsetup for dune-geometry ---
--- calling autogen for dune-geometry ---
Skipping dune-autogen because of CMake
--- calling configure for dune-geometry ---
----- using default flags $CONFIGURE_FLAGS from /home/fomins/gitwork/hades-github-lspr-ag/af.debian7.lsprag.cmakebuild.minimalistic-hades-2.opts -----
/home/fomins/gitwork/hades-github-lspr-ag/dune-geometry/lib/dunegeometryam2cmake.lib for converting options does not exist
 CXX=mpicxx CC=mpicc cmake -DCMAKE_MODULE_PATH=""  "-Ddune-common_DIR=/home/fomins/gitwork/hades-github-lspr-ag/dune-common/build-cmake" -DHADES_FLAGS="-DHAVE_DEBUG" -DCMAKE_CXXFLAGS="-Wall -pedantic -O0 -g3 -I/opt/extlib/parmetis/4.0.3/openmpi/1.8.1/gcc/4.9.0 -I/opt/extlib/metis/5.1.0/gcc/4.9.0/include -I/opt/extlib/superludist/3.3/openmpi/1.8.1/gcc/4.9.0/SRC " -DMETIS_ROOT="/opt/extlib/metis/5.1.0/gcc/4.9.0" -DPARMETIS_ROOT="/opt/extlib/parmetis/4.0.3/openmpi/1.8.1/gcc/4.9.0" -DSUPERLUDIST_ROOT="/opt/extlib/superludist/3.3/openmpi/1.8.1/gcc/4.9.0" -DCMAKE_LIBRARY_PATH:RELEASE="/opt/extlib/boost/1.58.0/gcc/4.9.0/lib" -DCMAKE_LIBRARY_PATH:DEBUG="/opt/extlib/boost/1.58.0/gcc/4.9.0/lib" -DCMAKE_STANDARD_LIBRARIES:RELEASE="-lboost_system -lprogram_options" -DCMAKE_STANDARD_LIBRARIES:DEBUG="-lboost_system -lprogram_options" -DCMAKE_PREFIX_PATH="/opt/extlib/boost/1.58.0/gcc/4.9.0;/opt/extlib/parmetis/4.0.3/openmpi/1.8.1/gcc/4.9.0;/opt/extlib/metis/5.1.0/gcc/4.9.0;/opt/extlib/superludist/3.3/openmpi/1.8.1/gcc/4.9.0;/opt/extlib/superludist/3.3/openmpi/1.8.1/gcc/4.9.0/SRC;/opt/extlib/superludist/3.3/openmpi/1.8.1/gcc/4.9.0/lib;" -DDUNE_GRID_EXPERIMENTAL_GRID_EXTENSIONS:BOOL=TRUE -DCMAKE_SHARED_LINKER_FLAGS="-lzlib" "/home/fomins/gitwork/hades-github-lspr-ag/dune-geometry"
-- Dependencies for dune-geometry: dune-common (>= 2.4)
-- I could not find the latex2html command.
-- Could NOT find Doxygen (missing:  DOXYGEN_EXECUTABLE) 
-- Performing tests specific to dune-common from file /home/fomins/gitwork/hades-github-lspr-ag/dune-common/cmake/modules/DuneCommonMacros.cmake.
-- A library with BLAS API found.
-- A library with LAPACK API found.
-- Could NOT find GMP (missing:  GMP_INCLUDE_DIR GMP_LIB GMPXX_LIB GMP_HEADER_WORKS GMPXX_LIB_WORKS) 
-- Setting dune-common_INCLUDE_DIRS=/home/fomins/gitwork/hades-github-lspr-ag/dune-common
-- Setting dune-common_LIBRARIES=dunecommon
-- Using scripts from /home/fomins/gitwork/hades-github-lspr-ag/dune-common/cmake/scripts for creating doxygen stuff.
-- Adding custom target for config.h generation
-- 
-- The following OPTIONAL packages have been found:

 * MPI
 * PkgConfig
 * BLAS
 * Threads
 * LAPACK
 * Inkscape

-- The following REQUIRED packages have been found:

 * dune-common

-- The following OPTIONAL packages have not been found:

 * ThreadsCMake31
 * LATEX
 * UnixCommands
 * Doxygen
 * GMP

-- Configuring done
-- Generating done
-- Build files have been written to: /home/fomins/gitwork/hades-github-lspr-ag/dune-geometry/build-cmake
--- calling make for dune-geometry ---
build directory: build-cmake
cmake --build . -- 
[100%] Built target dunegeometry
--- dune-geometry done ---
--- calling all for dune-grid ---
--- calling vcsetup for dune-grid ---
--- calling autogen for dune-grid ---
Skipping dune-autogen because of CMake
--- calling configure for dune-grid ---
----- using default flags $CONFIGURE_FLAGS from /home/fomins/gitwork/hades-github-lspr-ag/af.debian7.lsprag.cmakebuild.minimalistic-hades-2.opts -----
/home/fomins/gitwork/hades-github-lspr-ag/dune-geometry/lib/dunegeometryam2cmake.lib for converting options does not exist
 CXX=mpicxx CC=mpicc cmake -DCMAKE_MODULE_PATH=""  "-Ddune-common_DIR=/home/fomins/gitwork/hades-github-lspr-ag/dune-common/build-cmake" "-Ddune-geometry_DIR=/home/fomins/gitwork/hades-github-lspr-ag/dune-geometry/build-cmake" -DENABLE_EXPERIMENTAL_GRID_EXTENSIONS:BOOL=TRUE -DHADES_FLAGS="-DHAVE_DEBUG" -DCMAKE_CXXFLAGS="-Wall -pedantic -O0 -g3 -I/opt/extlib/parmetis/4.0.3/openmpi/1.8.1/gcc/4.9.0 -I/opt/extlib/metis/5.1.0/gcc/4.9.0/include -I/opt/extlib/superludist/3.3/openmpi/1.8.1/gcc/4.9.0/SRC " -DMETIS_ROOT="/opt/extlib/metis/5.1.0/gcc/4.9.0" -DPARMETIS_ROOT="/opt/extlib/parmetis/4.0.3/openmpi/1.8.1/gcc/4.9.0" -DSUPERLUDIST_ROOT="/opt/extlib/superludist/3.3/openmpi/1.8.1/gcc/4.9.0" -DCMAKE_LIBRARY_PATH:RELEASE="/opt/extlib/boost/1.58.0/gcc/4.9.0/lib" -DCMAKE_LIBRARY_PATH:DEBUG="/opt/extlib/boost/1.58.0/gcc/4.9.0/lib" -DCMAKE_STANDARD_LIBRARIES:RELEASE="-lboost_system -lprogram_options" -DCMAKE_STANDARD_LIBRARIES:DEBUG="-lboost_system -lprogram_options" -DCMAKE_PREFIX_PATH="/opt/extlib/boost/1.58.0/gcc/4.9.0;/opt/extlib/parmetis/4.0.3/openmpi/1.8.1/gcc/4.9.0;/opt/extlib/metis/5.1.0/gcc/4.9.0;/opt/extlib/superludist/3.3/openmpi/1.8.1/gcc/4.9.0;/opt/extlib/superludist/3.3/openmpi/1.8.1/gcc/4.9.0/SRC;/opt/extlib/superludist/3.3/openmpi/1.8.1/gcc/4.9.0/lib;" -DDUNE_GRID_EXPERIMENTAL_GRID_EXTENSIONS:BOOL=TRUE -DCMAKE_SHARED_LINKER_FLAGS="-lzlib" "/home/fomins/gitwork/hades-github-lspr-ag/dune-grid"
-- Dependencies for dune-grid: dune-common (>= 2.4);dune-geometry (>= 2.4)
-- Dependencies for dune-geometry: dune-common (>= 2.4)
-- I could not find the latex2html command.
-- Could NOT find Doxygen (missing:  DOXYGEN_EXECUTABLE) 
-- Performing tests specific to dune-common from file /home/fomins/gitwork/hades-github-lspr-ag/dune-common/cmake/modules/DuneCommonMacros.cmake.
-- A library with BLAS API found.
-- A library with LAPACK API found.
-- Could NOT find GMP (missing:  GMP_INCLUDE_DIR GMP_LIB GMPXX_LIB GMP_HEADER_WORKS GMPXX_LIB_WORKS) 
-- Setting dune-common_INCLUDE_DIRS=/home/fomins/gitwork/hades-github-lspr-ag/dune-common
-- Setting dune-common_LIBRARIES=dunecommon
-- Setting dune-geometry_INCLUDE_DIRS=/home/fomins/gitwork/hades-github-lspr-ag/dune-geometry
-- Setting dune-geometry_LIBRARIES=dunegeometry
-- Performing tests specific to dune-grid from file /home/fomins/gitwork/hades-github-lspr-ag/dune-grid/cmake/modules/DuneGridMacros.cmake.
-- checking for module 'alugrid'
--   package 'alugrid' not found
-- checking for module 'alugrid'
--   package 'alugrid' not found
-- Could NOT find ALUGrid (missing:  ALUGRID_VERSION ALUGRID_INCLUDE_PATH ALUGRID_LIB ALUGRID_LIB_PATH ALULIB_FUNCTIONAL HAVE_ALUGRID_SERIAL_H) 
CMake Warning at cmake/modules/UseUG.cmake:27 (find_package):
  Could not find a package configuration file provided by "UG" (requested
  version 3.11.0) with any of the following names:

    UGConfig.cmake
    ug-config.cmake

  Add the installation prefix of "UG" to CMAKE_PREFIX_PATH or set "UG_DIR" to
  a directory containing one of the above files.  If "UG" provides a separate
  development package or SDK, be sure it has been installed.
Call Stack (most recent call first):
  cmake/modules/DuneGridMacros.cmake:14 (include)
  /home/fomins/gitwork/hades-github-lspr-ag/dune-common/cmake/modules/DuneMacros.cmake:516 (include)
  /home/fomins/gitwork/hades-github-lspr-ag/dune-common/cmake/modules/DuneMacros.cmake:646 (dune_process_dependency_macros)
  CMakeLists.txt:22 (dune_project)

-- Could NOT find UG (missing:  UG_DIR HAVE_UG) 
-- Could NOT find OpenGL (missing:  OPENGL_gl_LIBRARY OPENGL_INCLUDE_DIR) 
-- Could NOT find Grape (missing:  X11_FOUND OPENGL_FOUND GRAPE_INCLUDE_DIR GRAPE_LIBRARY _GRAPE_LIB_FUNCTIONAL _GRAPE_HEADER_USABLE) 
-- checking for one of the modules 'psurface'
-- checking for module 'psurface'
--   package 'psurface' not found
-- Could NOT find psurface (missing:  PSURFACE_INCLUDE_DIR PSURFACE_LIBRARY) 
-- Could NOT find AmiraMesh (missing:  AMIRAMESH_INCLUDE_DIR AMIRAMESH_LIBRARY) 
-- Using scripts from /home/fomins/gitwork/hades-github-lspr-ag/dune-common/cmake/scripts for creating doxygen stuff.
-- Adding custom target for config.h generation
-- 
-- The following features have been enabled: