[Dune] CMake: compile dune-common now fails

[Christoph Grüninger]

Hi Marco,
as always please have a look at the first error.
Currently our Latex wrapper dies not support in-
source builds. Please usw out-of-source builds.

Bye
Christoph

Agnese, Marco" <m.agnese13 at imperial.ac.uk> schrieb:
> Hi everybody,
> I am trying to compile, using CMake, dune-common (last 
>version of the trunk) on my system. 
> It compiled some times ago but now it fails. 
> 
> This is the full output:
> 
> --- going to build dune-common  ---
> --- calling all for dune-common ---
> --- calling vcsetup for dune-common ---
> --- calling autogen for dune-common ---
> Skipping dune-autogen because of CMake
> --- calling configure for dune-common ---
> find: ‘dune’: No such file or directory
> cmake -DCMAKE_MODULE_PATH="" 
> -DCMAKE_DISABLE_FIND_PACKAGE_MPI=FALSE 
>-DCMAKE_CXX_FLAGS="-O3 -Wall -funroll-loops 
>-finline-functions -fomit-frame-pointer -ffast-math 
>-mfpmath=sse -msse3" 
>-DCMAKE_PREFIX_PATH="/usr/local_machine/ug-3.11.0;/usr/local_machine/alberta-3.0.0;/usr/local_machine/zoltan-3.8;/usr/local_machine/parmetis-4.0.3;;/usr/local_machine/petsc-3.5.3;/usr/local_machine/suitesparse-4.4.0" 
>-DDUNE_GRID_EXPERIMENTAL_GRID_EXTENSIONS:BOOL=TRUE 
>-DDUNE_EXTRA_UTILS:BOOL=TRUE 
>"/usr/local_machine/dune-trunk-cmake/dune-common"
> -- I could not find the latex2html command.
> -- Could NOT find Doxygen (missing:  DOXYGEN_EXECUTABLE) 
> -- Performing tests specific to dune-common from file 
>/usr/local_machine/dune-trunk-cmake/dune-common/cmake/modules/DuneCommonMacros.cmake.
> -- Using scripts from 
>/usr/local_machine/dune-trunk-cmake/dune-common/cmake/scripts 
>for creating doxygen stuff.
> CMake Error at cmake/modules/UseLATEX.cmake:743 (MESSAGE):
>  LaTeX files must be built out of source or you must set 
>LATEX_OUTPUT_PATH.
> Call Stack (most recent call first):
>  cmake/modules/UseLATEX.cmake:1361 (LATEX_GET_OUTPUT_PATH)
>  cmake/modules/DuneDoc.cmake:89 (add_latex_document)
>  doc/buildsystem/CMakeLists.txt:1 (dune_add_latex_document)
> 
> 
> CMake Error at cmake/modules/UseLATEX.cmake:743 (MESSAGE):
>  LaTeX files must be built out of source or you must set 
>LATEX_OUTPUT_PATH.
> Call Stack (most recent call first):
>  cmake/modules/UseLATEX.cmake:1361 (LATEX_GET_OUTPUT_PATH)
>  cmake/modules/DuneDoc.cmake:89 (add_latex_document)
>  doc/buildsystem/CMakeLists.txt:4 (dune_add_latex_document)
> 
> 
> CMake Error at cmake/modules/UseLATEX.cmake:743 (MESSAGE):
>  LaTeX files must be built out of source or you must set 
>LATEX_OUTPUT_PATH.
> Call Stack (most recent call first):
>  cmake/modules/UseLATEX.cmake:1361 (LATEX_GET_OUTPUT_PATH)
>  cmake/modules/DuneDoc.cmake:89 (add_latex_document)
>  doc/comm/CMakeLists.txt:8 (dune_add_latex_document)
> 
> 
> -- Not adding custom target for config.h generation
> -- 
> -- The following OPTIONAL packages have been found:
> 
> * PkgConfig
> * GMP
> * MPI
> * Threads
> 
> -- The following OPTIONAL packages have not been found:
> 
> * ThreadsCMake31
> * LATEX
> * UnixCommands
> * Doxygen
> * Inkscape
> 
> -- Configuring incomplete, errors occurred!
> See also 
>"/usr/local_machine/dune-trunk-cmake/dune-common/CMakeFiles/CMakeOutput.log".
> See also 
>"/usr/local_machine/dune-trunk-cmake/dune-common/CMakeFiles/CMakeError.log".
> --- Failed to build dune-common ---
> Terminating dunecontrol due to previous errors!
> 
> 
> and this is the CMakeError.log:
> 
> Determining if the pthread_create exist failed with the 
>following output:
> Change Dir: 
>/usr/local_machine/dune-trunk-cmake/dune-common/CMakeFiles/CMakeTmp
> 
> Run Build Command:/usr/bin/make 
>"cmTryCompileExec2681480346/fast"
> /usr/bin/make -f 
>CMakeFiles/cmTryCompileExec2681480346.dir/build.make 
>CMakeFiles/cmTryCompileExec2681480346.dir/build
> make[1]: Entering directory 
>`/usr/local_machine/dune-trunk-cmake/dune-common/CMakeFiles/CMakeTmp'
> /usr/bin/cmake -E cmake_progress_report 
>/usr/local_machine/dune-trunk-cmake/dune-common/CMakeFiles/CMakeTmp/CMakeFiles 
>1
> Building C object 
>CMakeFiles/cmTryCompileExec2681480346.dir/CheckSymbolExists.c.o
> /usr/bin/cc    -o 
>CMakeFiles/cmTryCompileExec2681480346.dir/CheckSymbolExists.c.o 
>  -c 
>/usr/local_machine/dune-trunk-cmake/dune-common/CMakeFiles/CMakeTmp/CheckSymbolExists.c
> Linking C executable cmTryCompileExec2681480346
> /usr/bin/cmake -E cmake_link_script 
>CMakeFiles/cmTryCompileExec2681480346.dir/link.txt 
>--verbose=1
> /usr/bin/cc 
>      CMakeFiles/cmTryCompileExec2681480346.dir/CheckSymbolExists.c.o 
> -o cmTryCompileExec2681480346 -rdynamic
> CMakeFiles/cmTryCompileExec2681480346.dir/CheckSymbolExists.c.o: 
>In function `main':
> CheckSymbolExists.c:(.text+0x16): undefined reference to 
>`pthread_create'
> collect2: error: ld returned 1 exit status
> make[1]: *** [cmTryCompileExec2681480346] Error 1
> make[1]: Leaving directory 
>`/usr/local_machine/dune-trunk-cmake/dune-common/CMakeFiles/CMakeTmp'
> make: *** [cmTryCompileExec2681480346/fast] Error 2
> 
>File 
>/usr/local_machine/dune-trunk-cmake/dune-common/CMakeFiles/CMakeTmp/CheckSymbolExists.c:
> /* */
> #include <pthread.h>
> 
> int main(int argc, char** argv)
> {
>  (void)argv;
> #ifndef pthread_create
>  return ((int*)(&pthread_create))[argc];
> #else
>  (void)argc;
>  return 0;
> #endif
> }
> 
> 
> What is the issue? How can I fix it?
> 
> Thank you very much for your help,
> regards,
> Marco.
> _______________________________________________
> Dune mailing list
> Dune at dune-project.org
> http://lists.dune-project.org/mailman/listinfo/dune

-- 
Je n'ai rien contre les étrangers, quelques uns de mes 
meilleurs amis
sont des étrangers. Mais ces étrangers là ne sont pas de chez 
nous!
[Agecanonix, Astérix - Le cadeau de César]