[Dune] A problem with ALUGrid

arya fallahi arya.fallahi at psi.ch
Tue Nov 2 16:56:07 CET 2010 

Dear Andreas,

I have compiled my code with both -g and -g3. However, I do not get anything more than before. The message I get is exactly like before. I would like to mention that the code was performing completely OK with no problem. I did not change anything on this code and only the Alugrid or Dune codes should have been changed to cause this problem.

Best
Arya

On Nov 2, 2010, at 4:00 PM, Andreas Dedner wrote:

> Hi,
> 
> if you can not get a more meaningful backtrace of the problem, there is no way I can
> help ypu. The problem is that your output does not tell me anything about in which
> context the myvertex method in alugrid is called. Not even the dune bindings. 
> You will have to reconfigure all dune and alugrid using -g as compiler flag and
> then rerun you code.
> 
> Best
> Andreas
> 
> On 02/11/10 14:41, arya fallahi wrote:
>> 
>> Hi Andreas,
>> 
>> Thank you for your consideration. The information you requested are as the following:
>> 
>> pcp034701:dune-trunk fallahi$ svn info dune-common
>> Path: dune-common
>> URL: https://svn.dune-project.org/svn/dune-common/trunk
>> Repository Root: https://svn.dune-project.org/svn/dune-common
>> Repository UUID: 419231ca-4411-0410-aba2-fc6cf8c4f609
>> Revision: 6221
>> Node Kind: directory
>> Schedule: normal
>> Last Changed Author: christi
>> Last Changed Rev: 6221
>> Last Changed Date: 2010-10-31 23:26:39 +0100 (Sun, 31 Oct 2010)
>> 
>> pcp034701:dune-trunk fallahi$ svn info dune-grid
>> Path: dune-grid
>> URL: https://svn.dune-project.org/svn/dune-grid/trunk
>> Repository Root: https://svn.dune-project.org/svn/dune-grid
>> Repository UUID: f82f27de-4411-0410-b156-930a902cda50
>> Revision: 7057
>> Node Kind: directory
>> Schedule: normal
>> Last Changed Author: mnolte
>> Last Changed Rev: 7057
>> Last Changed Date: 2010-11-01 15:51:45 +0100 (Mon, 01 Nov 2010)
>> 
>> pcp034701:dune-trunk fallahi$ svn info dune-istl
>> Path: dune-istl
>> URL: https://svn.dune-project.org/svn/dune-istl/trunk
>> Repository Root: https://svn.dune-project.org/svn/dune-istl
>> Repository UUID: 8c7282f0-4411-0410-8e4f-cdd3e049afb8
>> Revision: 1339
>> Node Kind: directory
>> Schedule: normal
>> Last Changed Author: christi
>> Last Changed Rev: 1339
>> Last Changed Date: 2010-10-31 01:01:58 +0200 (Sun, 31 Oct 2010)
>> 
>> pcp034701:dune-trunk fallahi$ svn info dune-grid-howto
>> Path: dune-grid-howto
>> URL: https://svn.dune-project.org/svn/dune-grid-howto/trunk
>> Repository Root: https://svn.dune-project.org/svn/dune-grid-howto
>> Repository UUID: 971b7fa1-7d12-0410-b1b7-9c127676b1f7
>> Revision: 335
>> Node Kind: directory
>> Schedule: normal
>> Last Changed Author: sander
>> Last Changed Rev: 335
>> Last Changed Date: 2010-10-07 18:25:08 +0200 (Thu, 07 Oct 2010)
>> 
>> ALUGrid version 1.32 is being used.
>> 
>> The code is being run under the following system:
>> 
>> System Version: Mac OS X 10.6.4 (10F569)
>>   Kernel Version: Darwin 10.4.0
>>   Boot Volume: Macintosh HD
>>   Boot Mode: Normal
>>   Computer Name: arya fallahi’s iMac
>>   User Name: arya fallahi (fallahi)
>>   Secure Virtual Memory: Not Enabled
>>   64-bit Kernel and Extensions: No
>>   Time since boot:
>>   5:15
>> 
>> I hope the above informations are enough. The complete message I receive is as follows:
>> 
>> 2010-Nov-02 12:29:59.468911 :::        hades3deld.cc:   169 ::: PRODUCTION  excitation data base initialized]
>> 
>> **WARNING (ignored) could'nt open file < alugrid.cfg > . Using default values: 
>> 0 < [balance] < 1.2   partitioning method "METIS_PartGraphKway"
>> 
>> 
>> Created parallel ALUSimplexGrid<3,3> from macro grid file '../../../grids/standardSphereRadius1Unit.dgf'. 
>> 
>> 2010-Nov-02 12:29:59.575736 ::: ../globaldatainterface/globaldatainterface.hh:    75 ::: PRODUCTION  [ Get element tags from macro grid ... 
>> 2010-Nov-02 12:29:59.576929 ::: ../globaldatainterface/globaldatainterface.hh:   134 ::: PRODUCTION  all element tags from macro grid are now available on cpu 0. ]
>> 2010-Nov-02 12:29:59.576979 :::        hades3deld.cc:   211 ::: PRODUCTION  global refinement = 0
>> 2010-Nov-02 12:29:59.577014 :::        hades3deld.cc:   230 ::: PRODUCTION  [parallel - initiate load balance
>> 2010-Nov-02 12:29:59.577052 ::: ../globaldatainterface/globaldatainterface.hh:   258 ::: PRODUCTION  [ buffering volume tags from dgf file, better for performance
>> ../globaldatainterface/globaldatainterface.hh:   285 ::: PRODUCTION  DEBUG    index set size = 3121
>> 2010-Nov-02 12:29:59.596661 ::: ../globaldatainterface/globaldatainterface.hh:   332 ::: PRODUCTION  buffered volume tags from dgf file, better for performance ]
>> 2010-Nov-02 12:29:59.596921 ::: ../globaldatainterface/globaldatainterface.hh:   343 ::: PRODUCTION  buffered volume tags from dgf file, better for performance ]
>> 2010-Nov-02 12:29:59.596981 ::: ../globaldatainterface/globaldatainterface.hh:   364 ::: PRODUCTION  buffered volume tags from dgf file, better for performance ]
>> 2010-Nov-02 12:29:59.598642 ::: ../globaldatainterface/globaldatainterface.hh:   399 ::: PRODUCTION  Data handling postLoadBalance begin.
>> 2010-Nov-02 12:29:59.606623 ::: ../globaldatainterface/globaldatainterface.hh:   462 ::: PRODUCTION  Data handling postLoadBalance begin.
>> 2010-Nov-02 12:29:59.606669 :::        hades3deld.cc:   240 ::: PRODUCTION  parallel - complete load balance]
>> 2010-Nov-02 12:29:59.606704 :::        hades3deld.cc:   248 ::: PRODUCTION  [parallel - #[remaining global refinement]=0
>> Assertion failed: (i == 0 || i == 1), function myvertex, file /Users/fallahi/extlib/ALUGrid-1.23/include/serial/gitter_sti.h, line 2380.
>> [pcp034701:24075] *** Process received signal ***
>> [pcp034701:24075] Signal: Abort trap (6)
>> [pcp034701:24075] Signal code:  (0)
>> [pcp034701:24075] [ 0] 2   libSystem.B.dylib                   0x00007fff88db535a _sigtramp + 26
>> [pcp034701:24075] [ 1] 3   ???                                 0x00000001023b18f0 0x0 + 4332394736
>> [pcp034701:24075] [ 2] 4   libSystem.B.dylib                   0x00007fff88e309b4 __pthread_markcancel + 0
>> [pcp034701:24075] [ 3] 5   hades3deld                          0x000000010015c2a6 _ZN7Hades3d14MeshStatisticsIN4Dune14ALUSimplexGridILi3ELi3EEELj3EE7analyzeEv + 2470
>> [pcp034701:24075] [ 4] 6   hades3deld                          0x00000001000091c2 main + 6082
>> [pcp034701:24075] [ 5] 7   hades3deld                          0x0000000100006da8 start + 52
>> [pcp034701:24075] *** End of error message ***
>> Abort trap
>> 
>> Thank you again for your help,
>> Arya
>> 
>> 
>> On Nov 2, 2010, at 1:22 PM, Andreas Dedner wrote:
>> 
>>> Hi,
>>> 
>>> as far as I am concerned, this bug report gives no information what so ever!
>>> 
>>> You seem to be in some function of your own which at some point wants to
>>> have some geometry information from alu (needs some vertex of grid at
>>> least)...
>>> There must be a lot of stuff going on between these two facts which is
>>> not available from your output
>>> and makes finding the error (as far as I can see) impossible.
>>> 
>>> Please always provide as much information as possible, if you want an
>>> answer.
>>> Starting from the version of dune and alugrid you are using, which gcc
>>> under which operating system and so...
>>> Finally run everything without optimization and give a complete stack trace.
>>> 
>>> Best
>>> Andreas
>>> 
>>> On 02/11/10 11:36, arya fallahi wrote:
>>>> Dear DUNE team,
>>>> 
>>>> I have got a problem with running my code. I think it is originated from the ALUGrid usage. Would you please take a look at the following message and let me know how I can remove the bugg?
>>>> 
>>>> Thank you in advance for your assistance
>>>> Best,
>>>> Arya
>>>> 
>>>> Assertion failed: (i == 0 || i == 1), function myvertex, file /Users/fallahi/extlib/ALUGrid-1.23/include/serial/gitter_sti.h, line 2380.
>>>> [pcp034701:24075] *** Process received signal ***
>>>> [pcp034701:24075] Signal: Abort trap (6)
>>>> [pcp034701:24075] Signal code:  (0)
>>>> [pcp034701:24075] [ 0] 2   libSystem.B.dylib                   0x00007fff88db535a _sigtramp + 26
>>>> [pcp034701:24075] [ 1] 3   ???                                 0x00000001023b18f0 0x0 + 4332394736
>>>> [pcp034701:24075] [ 2] 4   libSystem.B.dylib                   0x00007fff88e309b4 __pthread_markcancel + 0
>>>> [pcp034701:24075] [ 3] 5   hades3deld                          0x000000010015c2a6 _ZN7Hades3d14MeshStatisticsIN4Dune14ALUSimplexGridILi3ELi3EEELj3EE7analyzeEv + 2470
>>>> [pcp034701:24075] [ 4] 6   hades3deld                          0x00000001000091c2 main + 6082
>>>> [pcp034701:24075] [ 5] 7   hades3deld                          0x0000000100006da8 start + 52
>>>> [pcp034701:24075] *** End of error message ***
>>>> Abort trap
>>>> 
>>>> 
>>>> _______________________________________________
>>>> Dune mailing list
>>>> Dune at dune-project.org
>>>> http://lists.dune-project.org/mailman/listinfo/dune
>>>> 
>>> 
>> 
> 

-------------- next part --------------
An HTML attachment was scrubbed...
URL: <https://lists.dune-project.org/pipermail/dune/attachments/20101102/8287b678/attachment.htm>

More information about the Dune mailing list